Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005586

Physical Location & Seq

Genomic Coordinates Reverse (-)

26130588 .. 26135054

Gene Structure 4467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG230700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAGAATGGAACCCATGTGAACCATCAAGGAGGAGGAGGAGGGCCAGTGGACACAACTGCTGCAACAATCACCATTAAAGGCATTCTGAGCTTGCTATTGCAAAATGTTGATGAAGGTGAGAGCAAGAAGAGGCTGATTTCATTGGGTATGGGAGACCCAACTGCCTTTTCTTGCTTCCACACAACCCATATTGCTCAAGAAACTGTGGTTGATGCTATCCAATCAGACAAGTTCAATGGCTATGCTCCCACTGTGGGTCTTCCGCAAACCAGAAGAGCAATTGCTGAATATTTGTCCCGGGATCTTCCATACAATCTAACAACTGATGATGTTTTTGTCACATCTGGTTGCACTCAAGCAATTGATGTCGCATTGGCAATGCTTGCTCGCCCTGGTGCAAATATCTTGCTTCCAAGGCCAGGCTTCCCTATTTATGAACTTTGTTCTGCATTTAGAAATCTTGAGGTTCGGCATTTAGATCTCTTGCAAGACAGTGGCTGGGAGGTTAATCTCGATGCTGTTGAAGCTCTTGCCGATCAGAACACAGTTGCAATGGTAATTATAAACCCCGGAAATCCTTGTGGGAATGTGTACAGTTACCAACATTTGGAGAAGATTGCAGAAACTGCAAAGAAACTGAGAATTCTTGTAATTGCTGATGAAGTTTATGGACACCTTGCCTTTGGGGATAAACCATTTGTGCCAATGGGAGTGTTTGGTTCAACTGTTCCTGTTCTTACTCTTGGGTCTCTATCAAAGAGATGGATAGTTCCTGGATGGCGGCTTGGTTGGTTTGTGACAACTGATCCCTGTGGCATGTTTAGAAAACCCAAGGTTATTGAGCGCATTAAGAAATATTTTGATATTTTGGGCGGTCCTGCAACCTTCATTCAGGCAGCAGTTCCGAGCATCCTTGAGAAAACTGAAGAGGTCTTCTTCAAGAAAACTATCTATTTATTGAAGCAGTCATCAGATATTTGTTCTGATAAGATAAAGGACATCCCTTGTCTTACCTGTCCAAACAAACCAGAGGGTTCTATGGCTGTAATGGTGAAACTAGACCTTTCACTACTGGAAGATATTAGTGATGATATAGATTTTTGTTTCAAGCTGGCCAAAGAGGAATCTGTTATCTTTCTTCCAGGAACAGCAGTAGGGCTGAAAAACTGGATACGCGTTACATTTGCTGCTGATCCACCTTCTCTTGAAGAAGCTTTTAGGAGGACGAAATGTTTCTATCAAAGGCATGCCAGAAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006766 GO:0006775 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009110 GO:0009987 GO:0010189 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019439 GO:0019752 GO:0042360 GO:0042362 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

421

Amino Acids

46.4

Weight (kDa)

6.11

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	46 - 407	2.6e-54	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53970
fragaria_vesca	FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340 FvH4_3g19340
malus_domestica	MD03G1234800.v1.1 MD11G1255300.v1.1
prunus_persica	Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1 Prupe.4G174400_v2.0.a1
pyrus_communis	pycom11g22570
rosa_chinensis	RchiOBHm_Chr5g0032401
rosa_laevigata	RLG00000033395
rosa_multiflora	Rmu_sc0022287.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048030
rosa_rugosa	Rorug05G0131800
rosa_samantha	Rh5AG225000 Rh5BG226100 Rh5CG251500 Rh5DG230700
rosa_wichuraiana	Rw5G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccII	CGCG	1 cut(s)	1179
AciI	CCGC	3 cut(s)	266, 784, 876
AclWI	GGATC	3 cut(s)	312, 803, 1190
AcoI	YGGCCR	1 cut(s)	1116
AcsI	RAATTY	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	948
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	3 cut(s)	257, 422, 610
AflIII	ACRYGT	1 cut(s)	1177
AgsI	TTSAA	7 cut(s)	238, 527, 726, 943, 964, 1111, 1211
AjnI	CCWGG	4 cut(s)	394, 421, 775, 1144
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	4 cut(s)	93, 530, 1114, 1217
AluI	AGCT	4 cut(s)	93, 530, 1114, 1217
Alw26I	GTCTC	2 cut(s)	150, 756
AlwI	GGATC	3 cut(s)	312, 803, 1190
AlwNI	CAGNNNCTG	2 cut(s)	501, 629
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	3 cut(s)	44, 419, 1116
ApeKI	GCWGC	3 cut(s)	62, 899, 1190
ApoI	RAATTY	1 cut(s)	645
Asp700I	GAANNNNTTC	1 cut(s)	1235
AspLEI	GCGC	1 cut(s)	849
AspS9I	GGNCC	2 cut(s)	44, 878
AsuC2I	CCSGG	3 cut(s)	301, 302, 573
AsuHPI	GGTGA	3 cut(s)	64, 131, 1066
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	878
BalI	TGGCCA	1 cut(s)	1118
BbsI	GAAGAC	2 cut(s)	254, 928
BbvI	GCAGC	3 cut(s)	49, 911, 1177
BccI	CCATC	3 cut(s)	33, 759, 774
BciT130I	CCWGG	4 cut(s)	396, 423, 777, 1146
BciVI	GTATCC	1 cut(s)	1167
BcnI	CCSGG	3 cut(s)	301, 302, 573
BcoDI	GTCTC	2 cut(s)	150, 756
BfaI	CTAG	1 cut(s)	1061
BfuI	GTATCC	1 cut(s)	1167
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	4 cut(s)	63, 785, 900, 1191
BlsI	GCNGC	4 cut(s)	64, 786, 901, 1192
Bme1390I	CCNGG	7 cut(s)	301, 302, 396, 423, 573, 777, 1146
Bme18I	GGWCC	1 cut(s)	878
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	44, 878
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	7 cut(s)	301, 302, 396, 423, 573, 777, 1146
BmsI	GCATC	3 cut(s)	205, 508, 921
BpiI	GAAGAC	2 cut(s)	254, 928
BpuEI	CTTGAG	4 cut(s)	183, 342, 485, 938
BpuMI	CCSGG	3 cut(s)	301, 302, 573
BsaI	GGTCTC	2 cut(s)	150, 756
BsaJI	CCNNGG	5 cut(s)	300, 394, 416, 571, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 422, 610
Bse1I	ACTGG	3 cut(s)	47, 1080, 1175
Bse3DI	GCAATG	2 cut(s)	387, 561
BseBI	CCWGG	4 cut(s)	396, 423, 777, 1146
BseDI	CCNNGG	5 cut(s)	300, 394, 416, 571, 834
BseGI	GGATG	3 cut(s)	785, 912, 1002
BseLI	CCNNNNNNNGG	3 cut(s)	257, 422, 610
BseMI	GCAATG	2 cut(s)	387, 561
BseMII	CTCAG	2 cut(s)	80, 632
BseNI	ACTGG	3 cut(s)	47, 1080, 1175
BseRI	GAGGAG	3 cut(s)	48, 51, 54
BseXI	GCAGC	3 cut(s)	49, 911, 1177
BseYI	CCCAGC	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	1179
BshFI	GGCC	3 cut(s)	46, 421, 1118
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	301, 573
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	257, 422, 610
BsmAI	GTCTC	2 cut(s)	150, 756
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	3 cut(s)	46, 421, 1118
Bso31I	GGTCTC	2 cut(s)	150, 756
BsoBI	CYCGRG	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	5 cut(s)	304, 481, 538, 808, 1195
BspACI	CCGC	3 cut(s)	266, 784, 876
BspANI	GGCC	3 cut(s)	46, 421, 1118
BspCNI	CTCAG	2 cut(s)	81, 633
BspFNI	CGCG	1 cut(s)	1179
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	3 cut(s)	312, 803, 1190
BspQI	GCTCTTC	1 cut(s)	271
BspTNI	GGTCTC	2 cut(s)	150, 756
BsrDI	GCAATG	2 cut(s)	387, 561
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	3 cut(s)	47, 1080, 1175
BssECI	CCNNGG	5 cut(s)	300, 394, 416, 571, 834
BssMI	GATC	5 cut(s)	304, 481, 538, 808, 1195
BssT1I	CCWWGG	2 cut(s)	416, 834
Bst2UI	CCWGG	4 cut(s)	396, 423, 777, 1146
Bst4CI	ACNGT	6 cut(s)	208, 256, 497, 550, 599, 730
Bst6I	CTCTTC	3 cut(s)	125, 271, 924
BstAPI	GCANNNNNTGC	2 cut(s)	386, 629
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	5 cut(s)	95, 387, 391, 1116, 1251
BstDEI	CTNAG	2 cut(s)	89, 641
BstF5I	GGATG	3 cut(s)	785, 912, 1002
BstFNI	CGCG	1 cut(s)	1179
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	5 cut(s)	307, 484, 541, 811, 1198
BstMAI	GTCTC	2 cut(s)	150, 756
BstMBI	GATC	5 cut(s)	304, 481, 538, 808, 1195
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 386, 418, 527, 629
BstNI	CCWGG	4 cut(s)	396, 423, 777, 1146
BstNSI	RCATGY	2 cut(s)	823, 1253
BstSCI	CCNGG	7 cut(s)	299, 300, 394, 421, 571, 775, 1144
BstUI	CGCG	1 cut(s)	1179
BstV1I	GCAGC	3 cut(s)	49, 911, 1177
BstV2I	GAAGAC	2 cut(s)	254, 928
BstX2I	RGATCY	2 cut(s)	304, 481
BstYI	RGATCY	2 cut(s)	304, 481
BsuI	GTATCC	1 cut(s)	1167
BsuRI	GGCC	3 cut(s)	46, 421, 1118
BtsCI	GGATG	3 cut(s)	785, 912, 1002
BtsIMutI	CAGTG	3 cut(s)	54, 252, 502
Cac8I	GCNNGC	5 cut(s)	95, 387, 391, 1116, 1251
CaiI	CAGNNNCTG	2 cut(s)	501, 629
CfoI	GCGC	1 cut(s)	849
Cfr13I	GGNCC	2 cut(s)	44, 878
Cfr9I	CCCGGG	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	3 cut(s)	17, 820, 1250
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	2 cut(s)	89, 641
DpnI	GATC	5 cut(s)	306, 483, 540, 810, 1197
DpnII	GATC	5 cut(s)	304, 481, 538, 808, 1195
EaeI	YGGCCR	1 cut(s)	1116
Eam1104I	CTCTTC	3 cut(s)	125, 271, 924
EarI	CTCTTC	3 cut(s)	125, 271, 924
Eco130I	CCWWGG	2 cut(s)	416, 834
Eco31I	GGTCTC	2 cut(s)	150, 756
Eco47I	GGWCC	1 cut(s)	878
Eco57I	CTGAAG	1 cut(s)	948
Eco88I	CYCGRG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	645
EcoRII	CCWGG	4 cut(s)	394, 421, 775, 1144
EcoT14I	CCWWGG	2 cut(s)	416, 834
ErhI	CCWWGG	2 cut(s)	416, 834
FaeI	CATG	3 cut(s)	20, 823, 1253
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	3 cut(s)	16, 819, 1249
Fnu4HI	GCNGC	4 cut(s)	63, 785, 900, 1191
FokI	GGATG	3 cut(s)	792, 899, 989
Fsp4HI	GCNGC	4 cut(s)	63, 785, 900, 1191
FspBI	CTAG	1 cut(s)	1061
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	4 cut(s)	63, 785, 900, 1191
GsaI	CCCAGC	1 cut(s)	505
HaeIII	GGCC	3 cut(s)	46, 421, 1118
HapII	CCGG	2 cut(s)	301, 573
HhaI	GCGC	1 cut(s)	849
Hin1II	CATG	3 cut(s)	20, 823, 1253
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	1215
HinfI	GANTC	1 cut(s)	1127
HpaII	CCGG	2 cut(s)	301, 573
HphI	GGTGA	3 cut(s)	64, 131, 1066
Hpy166II	GTNNAC	3 cut(s)	22, 52, 595
Hpy188I	TCNGA	6 cut(s)	90, 229, 543, 909, 976, 988
Hpy188III	TCNNGA	5 cut(s)	200, 464, 515, 943, 1208
Hpy8I	GTNNAC	3 cut(s)	22, 52, 595
HpyAV	CCTTC	3 cut(s)	110, 898, 1212
HpyCH4III	ACNGT	6 cut(s)	208, 256, 497, 550, 599, 730
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 386, 418, 527, 629
HpyF3I	CTNAG	2 cut(s)	89, 641
Hsp92II	CATG	3 cut(s)	20, 823, 1253
HspAI	GCGC	1 cut(s)	847
Kzo9I	GATC	5 cut(s)	304, 481, 538, 808, 1195
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	3 cut(s)	49, 911, 1177
LweI	GCATC	3 cut(s)	205, 508, 921
MaeI	CTAG	1 cut(s)	1061
MaeIII	GTNAC	4 cut(s)	340, 599, 799, 1180
MalI	GATC	5 cut(s)	306, 483, 540, 810, 1197
MboI	GATC	5 cut(s)	304, 481, 538, 808, 1195
MfeI	CAATTG	2 cut(s)	282, 363
MflI	RGATCY	2 cut(s)	304, 481
MlsI	TGGCCA	1 cut(s)	1118
MluCI	AATT	6 cut(s)	282, 363, 561, 645, 654, 1259
MluI	ACGCGT	1 cut(s)	1177
MluNI	TGGCCA	1 cut(s)	1118
Mox20I	TGGCCA	1 cut(s)	1118
MroXI	GAANNNNTTC	1 cut(s)	1235
MscI	TGGCCA	1 cut(s)	1118
MseI	TTAA	3 cut(s)	78, 510, 852
Msp20I	TGGCCA	1 cut(s)	1118
MspI	CCGG	2 cut(s)	301, 573
MspR9I	CCNGG	7 cut(s)	301, 302, 396, 423, 573, 777, 1146
MunI	CAATTG	2 cut(s)	282, 363
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	4 cut(s)	396, 423, 777, 1146
MvnI	CGCG	1 cut(s)	1179
MwoI	GCNNNNNNNGC	5 cut(s)	90, 386, 418, 527, 629
NciI	CCSGG	3 cut(s)	301, 302, 573
NdeII	GATC	5 cut(s)	304, 481, 538, 808, 1195
NlaIII	CATG	3 cut(s)	20, 823, 1253
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	2 cut(s)	340, 799
NspI	RCATGY	2 cut(s)	823, 1253
PaeI	GCATGC	1 cut(s)	1253
PciSI	GCTCTTC	1 cut(s)	271
PctI	GAATGC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	1235
PfeI	GAWTC	1 cut(s)	1127
PflMI	CCANNNNNTGG	1 cut(s)	610
PfoI	TCCNGGA	2 cut(s)	775, 1144
PkrI	GCNGC	4 cut(s)	64, 786, 901, 1192
PsiI	TTATAA	1 cut(s)	566
Psp6I	CCWGG	4 cut(s)	394, 421, 775, 1144
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	4 cut(s)	394, 421, 775, 1144
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	44, 878
PstNI	CAGNNNCTG	2 cut(s)	501, 629
PsuI	RGATCY	2 cut(s)	304, 481
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	3 cut(s)	78, 510, 852
SatI	GCNGC	4 cut(s)	63, 785, 900, 1191
Sau3AI	GATC	5 cut(s)	304, 481, 538, 808, 1195
Sau96I	GGNCC	2 cut(s)	44, 878
ScrFI	CCNGG	7 cut(s)	301, 302, 396, 423, 573, 777, 1146
SfaNI	GCATC	3 cut(s)	205, 508, 921
SinI	GGWCC	1 cut(s)	878
SmaI	CCCGGG	1 cut(s)	302
SmlI	CTYRAG	4 cut(s)	198, 357, 464, 917
SmoI	CTYRAG	4 cut(s)	198, 357, 464, 917
SphI	GCATGC	1 cut(s)	1253
Sse9I	AATT	6 cut(s)	282, 363, 561, 645, 654, 1259
SsiI	CCGC	3 cut(s)	266, 784, 876
SspI	AATATT	2 cut(s)	293, 860
SspMI	CTAG	1 cut(s)	1061
StyD4I	CCNGG	7 cut(s)	299, 300, 394, 421, 571, 775, 1144
StyI	CCWWGG	2 cut(s)	416, 834
TaaI	ACNGT	6 cut(s)	208, 256, 497, 550, 599, 730
TaqI	TCGA	1 cut(s)	516
TasI	AATT	6 cut(s)	282, 363, 561, 645, 654, 1259
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	1 cut(s)	787
TfiI	GAWTC	1 cut(s)	1127
Tru1I	TTAA	3 cut(s)	78, 510, 852
Tru9I	TTAA	3 cut(s)	78, 510, 852
TscAI	CASTG	3 cut(s)	54, 259, 502
TseFI	GTSAC	2 cut(s)	340, 799
TseI	GCWGC	3 cut(s)	62, 899, 1190
Tsp45I	GTSAC	2 cut(s)	340, 799
TspDTI	ATGAA	5 cut(s)	129, 132, 453, 678, 880
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	3 cut(s)	54, 259, 502
Van91I	CCANNNNNTGG	1 cut(s)	610
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	1 cut(s)	645
XceI	RCATGY	2 cut(s)	823, 1253
XmaI	CCCGGG	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	1235
XspI	CTAG	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.