FvH4_3g21810

Polycomb group protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009336
Physical Location & Seq
Reverse (-)
14858632 .. 14863239
4608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21810.t1

Sequence Viewer

Length: 786 bp
ATGCGTGTCATTGATTGCGGGAGTGAGAAGATAGATAAGAGTTTTGTTGGCCATGGTGACTCGATAAATGAAATCAGGACTCAACCGTTGAAGTCATCACTTGTAGTGTCAGCAAGCAAAGATGAGTCAGTTCGACTGTGGAATGTTCATACTGGAATATGTATTTTGATATTCGCTGGAGCAGGCGGTCATCGAAATGAAGTTTTGAGTGTGGACTTTCATCCATCTGACATTTATCGAATTGCAAGTTGTGGCATGGACAACACAGTTAAGATATGGTCGATGAAAGAGTTTTGGACATATGTAGAGAAATCTTTCACATGGACAGATCTTCCATCGAAATTCCCTACAAAATACGTACAATTTCCTGTTTTCCTAGCCTCCATTCATACAAACTATGTTGACTGTAATAGGTGGCTTGGAGATTTTATGCTCTCAAAGAGTGTTGACAGTGAAATTGTGCTGTGGGAACCAAAAATGAAAGAGCAGTCTCCTGGCGAGGGCACCGTTGACATCCTTCAAAAGTACCCTGTTCCAGGGTGTGATATTTGGTTCATCAAGTTCTCCTGTGATTTTCATTATAATGCAGCTGCTATAGGGAATAGAGAAGGAAAGATATTCATATGGGAACTACAATCCAGCCCCCCAGTCCTTGTTGCAAAGTTGTCTCATCCTCAATCAAAATCTCCAATTAGACAAACTGCCATGTCCTTTGATGGAAGCACCATTCTCAGCTGCTGTGAGGATGGGACTATTTGGCGTTGGGATGTCATGGAAAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009266 GO:0009409 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009960 GO:0009987 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071695 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090567 GO:0090568 GO:0090696 GO:0097437 GO:0099402 GO:0140110 GO:1901360 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

262

Amino Acids

29.58

Weight (kDa)

5.81

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 2 - 98 1.7e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 2 - 102 4.2e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 3 - 97 3.1e-15 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 3 - 94 1.6e-12 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 3 - 98 8.1e-12 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 9 - 55 2.3e-07 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 31 - 98 1.3e-06 WDR3 second beta-propeller domain
WD40 PF00400 63 - 94 1.3e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 503
AciI CCGC 2 cut(s) 18, 186
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 2 cut(s) 341, 778
AfaI GTAC 2 cut(s) 360, 527
AfiI CCNNNNNNNGG 2 cut(s) 500, 536
AgsI TTSAA 2 cut(s) 91, 521
AjnI CCWGG 2 cut(s) 493, 535
AluBI AGCT 2 cut(s) 590, 735
AluI AGCT 2 cut(s) 590, 735
Alw26I GTCTC 2 cut(s) 495, 672
AlwNI CAGNNNCTG 1 cut(s) 738
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 3 cut(s) 587, 590, 735
ApoI RAATTY 2 cut(s) 341, 778
Asp700I GAANNNNTTC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 506
BalI TGGCCA 1 cut(s) 51
BanI GGYRCC 1 cut(s) 503
BbvI GCAGC 3 cut(s) 577, 599, 722
BccI CCATC 4 cut(s) 232, 343, 710, 740
BciT130I CCWGG 2 cut(s) 495, 537
BcoDI GTCTC 2 cut(s) 495, 672
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 594
BglII AGATCT 1 cut(s) 328
BisI GCNGC 3 cut(s) 588, 591, 736
BlsI GCNGC 3 cut(s) 589, 592, 737
Bme1390I CCNGG 2 cut(s) 495, 537
BmiI GGNNCC 2 cut(s) 471, 505
BmrFI CCNGG 2 cut(s) 495, 537
BmrI ACTGGG 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 641
BpmI CTGGAG 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 52, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 500, 536
Bse1I ACTGG 2 cut(s) 157, 647
BseBI CCWGG 2 cut(s) 495, 537
BseDI CCNNGG 2 cut(s) 52, 536
BseGI GGATG 5 cut(s) 220, 513, 670, 751, 772
BseLI CCNNNNNNNGG 2 cut(s) 500, 536
BseMII CTCAG 1 cut(s) 745
BseNI ACTGG 2 cut(s) 157, 647
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 3 cut(s) 577, 599, 722
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 503
BslFI GGGAC 1 cut(s) 763
BslI CCNNNNNNNGG 2 cut(s) 500, 536
BsmAI GTCTC 2 cut(s) 495, 672
BsmFI GGGAC 1 cut(s) 763
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 1 cut(s) 328
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 2 cut(s) 18, 186
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 744
BspLI GGNNCC 2 cut(s) 471, 505
BspT107I GGYRCC 1 cut(s) 503
BsrI ACTGG 2 cut(s) 157, 647
BssECI CCNNGG 2 cut(s) 52, 536
BssMI GATC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 2 cut(s) 495, 537
Bst4CI ACNGT 6 cut(s) 87, 138, 268, 407, 452, 508
BstBAI YACGTR 1 cut(s) 358
BstC8I GCNNGC 2 cut(s) 115, 184
BstDEI CTNAG 1 cut(s) 731
BstDSI CCRYGG 1 cut(s) 52
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 5 cut(s) 220, 513, 670, 751, 772
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 2 cut(s) 495, 672
BstMBI GATC 1 cut(s) 328
BstNI CCWGG 2 cut(s) 495, 537
BstSCI CCNGG 2 cut(s) 493, 535
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 506
BstSNI TACGTA 1 cut(s) 358
BstV1I GCAGC 3 cut(s) 577, 599, 722
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 5 cut(s) 220, 513, 670, 751, 772
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 115, 184
CaiI CAGNNNCTG 1 cut(s) 738
Csp6I GTAC 2 cut(s) 359, 526
CviAII CATG 5 cut(s) 53, 256, 321, 706, 772
CviJI RGCY 6 cut(s) 51, 380, 418, 590, 642, 735
CviKI_1 RGCY 6 cut(s) 51, 380, 418, 590, 642, 735
CviQI GTAC 2 cut(s) 359, 526
DdeI CTNAG 1 cut(s) 731
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 49
Eco105I TACGTA 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRII CCWGG 2 cut(s) 493, 535
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 5 cut(s) 56, 259, 324, 709, 775
FaqI GGGAC 1 cut(s) 763
FatI CATG 5 cut(s) 52, 255, 320, 705, 771
FauI CCCGC 1 cut(s) 11
FauNDI CATATG 2 cut(s) 301, 623
Fnu4HI GCNGC 3 cut(s) 588, 591, 736
FokI GGATG 5 cut(s) 207, 500, 657, 758, 779
Fsp4HI GCNGC 3 cut(s) 588, 591, 736
FspBI CTAG 1 cut(s) 377
GluI GCNGC 3 cut(s) 588, 591, 736
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 5 cut(s) 56, 259, 324, 709, 775
HincII GTYRAC 3 cut(s) 403, 448, 511
HindII GTYRAC 3 cut(s) 403, 448, 511
HinfI GANTC 3 cut(s) 59, 79, 125
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 4 cut(s) 214, 403, 448, 511
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 76, 783
Hpy8I GTNNAC 4 cut(s) 214, 403, 448, 511
HpyAV CCTTC 2 cut(s) 527, 602
HpyCH4III ACNGT 6 cut(s) 87, 138, 268, 407, 452, 508
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 245, 587, 659
HpyF3I CTNAG 1 cut(s) 731
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 5 cut(s) 56, 259, 324, 709, 775
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 3 cut(s) 577, 599, 722
MaeI CTAG 1 cut(s) 377
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 2 cut(s) 40, 323
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 6 cut(s) 240, 341, 362, 456, 690, 778
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 3 cut(s) 53, 73, 134
MnlI CCTC 4 cut(s) 391, 493, 684, 736
Mox20I TGGCCA 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 314
MscI TGGCCA 1 cut(s) 51
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 195, 582
Msp20I TGGCCA 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 590, 735
MspR9I CCNGG 2 cut(s) 495, 537
MvaI CCWGG 2 cut(s) 495, 537
NcoI CCATGG 1 cut(s) 52
NdeI CATATG 2 cut(s) 301, 623
NdeII GATC 1 cut(s) 328
NlaIII CATG 5 cut(s) 56, 259, 324, 709, 775
NlaIV GGNNCC 2 cut(s) 471, 505
NmuCI GTSAC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 314
PkrI GCNGC 3 cut(s) 589, 592, 737
PleI GAGTC 3 cut(s) 53, 73, 133
PpsI GAGTC 3 cut(s) 53, 73, 133
Ppu21I YACGTR 1 cut(s) 358
PsiI TTATAA 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 493, 535
PspGI CCWGG 2 cut(s) 493, 535
PspN4I GGNNCC 2 cut(s) 471, 505
PstNI CAGNNNCTG 1 cut(s) 738
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 2 cut(s) 590, 735
RsaI GTAC 2 cut(s) 360, 527
RsaNI GTAC 2 cut(s) 359, 526
RseI CAYNNNNRTG 2 cut(s) 195, 582
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 588, 591, 736
Sau3AI GATC 1 cut(s) 328
SchI GAGTC 3 cut(s) 53, 73, 134
ScrFI CCNGG 2 cut(s) 495, 537
SduI GDGCHC 1 cut(s) 506
SetI ASST 4 cut(s) 360, 416, 592, 737
SfcI CTRYAG 1 cut(s) 594
SmiMI CAYNNNNRTG 2 cut(s) 195, 582
SnaBI TACGTA 1 cut(s) 358
Sse9I AATT 6 cut(s) 240, 341, 362, 456, 690, 778
SsiI CCGC 2 cut(s) 18, 186
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 493, 535
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 6 cut(s) 87, 138, 268, 407, 452, 508
TaiI ACGT 1 cut(s) 360
TaqI TCGA 6 cut(s) 62, 133, 193, 238, 281, 338
TasI AATT 6 cut(s) 240, 341, 362, 456, 690, 778
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 3 cut(s) 587, 590, 735
Tsp45I GTSAC 1 cut(s) 56
TspRI CASTG 1 cut(s) 457
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 2 cut(s) 341, 778
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.