Polycomb group protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G20740 |
| fragaria_vesca | FvH4_3g21810 FvH4_3g21810 |
| malus_domestica | MD03G1211700.v1.1 MD11G1227100.v1.1 |
| prunus_persica | Prupe.4G202200_v2.0.a1 |
| pyrus_communis | pycom03g16040 pycom11g19970 |
| rosa_chinensis | RchiOBHm_Chr5g0037411 |
| rosa_laevigata | RLG00000033781 |
| rosa_multiflora | Rmu_sc0002271.1_g000032 Rmu_sc0002521.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00043500 Rroxscaffold_1G00043570 |
| rosa_rugosa | Rorug05G0165100 Rorug05G0165200 Rorug05G0165300 |
| rosa_samantha | Rh5AG254300 Rh5BG256300 Rh5DG264600 |
| rosa_wichuraiana | Rw5G023520 Rw5G023540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 503 |
| Acc36I | ACCTGC | 1 cut(s) | 503 |
| AccI | GTMKAC | 1 cut(s) | 189 |
| AccIII | TCCGGA | 1 cut(s) | 865 |
| AciI | CCGC | 4 cut(s) | 5, 38, 334, 523 |
| AcoI | YGGCCR | 1 cut(s) | 379 |
| AcsI | RAATTY | 2 cut(s) | 671, 1108 |
| AfaI | GTAC | 2 cut(s) | 71, 835 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 38, 541, 830, 865 |
| AgsI | TTSAA | 5 cut(s) | 127, 151, 393, 421, 851 |
| AjiI | CACGTC | 1 cut(s) | 1038 |
| AjnI | CCWGG | 1 cut(s) | 823 |
| AluBI | AGCT | 3 cut(s) | 273, 920, 1065 |
| AluI | AGCT | 3 cut(s) | 273, 920, 1065 |
| Alw26I | GTCTC | 1 cut(s) | 825 |
| Aor13HI | TCCGGA | 1 cut(s) | 865 |
| AoxI | GGCC | 2 cut(s) | 104, 379 |
| ApeKI | GCWGC | 2 cut(s) | 917, 920 |
| ApoI | RAATTY | 2 cut(s) | 671, 1108 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 356, 388 |
| AseI | ATTAAT | 1 cut(s) | 321 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 620 |
| AspLEI | GCGC | 1 cut(s) | 1092 |
| AspS9I | GGNCC | 1 cut(s) | 105 |
| AsuHPI | GGTGA | 3 cut(s) | 193, 512, 764 |
| BalI | TGGCCA | 1 cut(s) | 381 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 53, 85 |
| BbsI | GAAGAC | 1 cut(s) | 148 |
| BbvI | GCAGC | 2 cut(s) | 907, 929 |
| BccI | CCATC | 6 cut(s) | 125, 284, 580, 673, 1040, 1070 |
| BceAI | ACGGC | 1 cut(s) | 203 |
| BciT130I | CCWGG | 1 cut(s) | 825 |
| BcoDI | GTCTC | 1 cut(s) | 825 |
| BfaI | CTAG | 1 cut(s) | 200 |
| BfmI | CTRYAG | 1 cut(s) | 924 |
| BfoI | RGCGCY | 1 cut(s) | 1093 |
| BfuAI | ACCTGC | 1 cut(s) | 503 |
| BglII | AGATCT | 2 cut(s) | 603, 658 |
| BisI | GCNGC | 3 cut(s) | 6, 918, 921 |
| BlsI | GCNGC | 3 cut(s) | 7, 919, 922 |
| Bme1390I | CCNGG | 1 cut(s) | 825 |
| BmgBI | CACGTC | 1 cut(s) | 1038 |
| BmgT120I | GGNCC | 1 cut(s) | 105 |
| BmiI | GGNNCC | 3 cut(s) | 30, 89, 801 |
| BmrFI | CCNGG | 1 cut(s) | 825 |
| BmrI | ACTGGG | 1 cut(s) | 854 |
| BmsI | GCATC | 1 cut(s) | 1087 |
| BmuI | ACTGGG | 1 cut(s) | 854 |
| BpiI | GAAGAC | 1 cut(s) | 148 |
| BpmI | CTGGAG | 1 cut(s) | 333 |
| BsaJI | CCNNGG | 3 cut(s) | 382, 824, 1101 |
| BsaWI | WCCGGW | 1 cut(s) | 865 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 38, 541, 830, 865 |
| Bse1I | ACTGG | 3 cut(s) | 32, 487, 860 |
| Bse3DI | GCAATG | 1 cut(s) | 532 |
| BseAI | TCCGGA | 1 cut(s) | 865 |
| BseBI | CCWGG | 1 cut(s) | 825 |
| BseDI | CCNNGG | 3 cut(s) | 382, 824, 1101 |
| BseGI | GGATG | 7 cut(s) | 256, 550, 591, 843, 1000, 1081, 1102 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 38, 541, 830, 865 |
| BseMI | GCAATG | 1 cut(s) | 532 |
| BseMII | CTCAG | 3 cut(s) | 425, 527, 1075 |
| BseNI | ACTGG | 3 cut(s) | 32, 487, 860 |
| BseRI | GAGGAG | 1 cut(s) | 752 |
| BseXI | GCAGC | 2 cut(s) | 907, 929 |
| BseYI | CCCAGC | 3 cut(s) | 273, 506, 1092 |
| BshFI | GGCC | 2 cut(s) | 106, 381 |
| BsiSI | CCGG | 1 cut(s) | 866 |
| BslFI | GGGAC | 1 cut(s) | 1093 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 38, 541, 830, 865 |
| BsmAI | GTCTC | 1 cut(s) | 825 |
| BsmFI | GGGAC | 1 cut(s) | 1093 |
| BsnI | GGCC | 2 cut(s) | 106, 381 |
| Bsp13I | TCCGGA | 1 cut(s) | 865 |
| Bsp143I | GATC | 3 cut(s) | 213, 603, 658 |
| Bsp19I | CCATGG | 2 cut(s) | 382, 1101 |
| BspACI | CCGC | 4 cut(s) | 5, 38, 334, 523 |
| BspANI | GGCC | 2 cut(s) | 106, 381 |
| BspCNI | CTCAG | 3 cut(s) | 424, 528, 1074 |
| BspEI | TCCGGA | 1 cut(s) | 865 |
| BspLI | GGNNCC | 3 cut(s) | 30, 89, 801 |
| BspMI | ACCTGC | 1 cut(s) | 503 |
| BsrDI | GCAATG | 1 cut(s) | 532 |
| BsrI | ACTGG | 3 cut(s) | 32, 487, 860 |
| BssECI | CCNNGG | 3 cut(s) | 382, 824, 1101 |
| BssMI | GATC | 3 cut(s) | 213, 603, 658 |
| BssNAI | GTATAC | 1 cut(s) | 190 |
| BssT1I | CCWWGG | 2 cut(s) | 382, 1101 |
| Bst1107I | GTATAC | 1 cut(s) | 190 |
| Bst2UI | CCWGG | 1 cut(s) | 825 |
| Bst4CI | ACNGT | 6 cut(s) | 166, 187, 598, 737, 819, 838 |
| Bst6I | CTCTTC | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 3 cut(s) | 271, 280, 445 |
| BstDEI | CTNAG | 3 cut(s) | 411, 536, 1061 |
| BstDSI | CCRYGG | 2 cut(s) | 382, 1101 |
| BstEII | GGTNACC | 1 cut(s) | 518 |
| BstF5I | GGATG | 7 cut(s) | 256, 550, 591, 843, 1000, 1081, 1102 |
| BstH2I | RGCGCY | 1 cut(s) | 1093 |
| BstHHI | GCGC | 1 cut(s) | 1092 |
| BstKTI | GATC | 3 cut(s) | 216, 606, 661 |
| BstMAI | GTCTC | 1 cut(s) | 825 |
| BstMBI | GATC | 3 cut(s) | 213, 603, 658 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 14, 275, 279 |
| BstNI | CCWGG | 1 cut(s) | 825 |
| BstNSI | RCATGY | 1 cut(s) | 282 |
| BstPI | GGTNACC | 1 cut(s) | 518 |
| BstSCI | CCNGG | 1 cut(s) | 823 |
| BstSFI | CTRYAG | 1 cut(s) | 924 |
| BstV1I | GCAGC | 2 cut(s) | 907, 929 |
| BstV2I | GAAGAC | 1 cut(s) | 148 |
| BstX2I | RGATCY | 2 cut(s) | 603, 658 |
| BstYI | RGATCY | 2 cut(s) | 603, 658 |
| BstZ17I | GTATAC | 1 cut(s) | 190 |
| BsuRI | GGCC | 2 cut(s) | 106, 381 |
| BtgI | CCRYGG | 2 cut(s) | 382, 1101 |
| BtrI | CACGTC | 1 cut(s) | 1038 |
| BtsCI | GGATG | 7 cut(s) | 256, 550, 591, 843, 1000, 1081, 1102 |
| BtsI | GCAGTG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 3 cut(s) | 39, 264, 594 |
| BveI | ACCTGC | 1 cut(s) | 503 |
| Cac8I | GCNNGC | 3 cut(s) | 271, 280, 445 |
| CfoI | GCGC | 1 cut(s) | 1092 |
| Cfr13I | GGNCC | 1 cut(s) | 105 |
| Csp6I | GTAC | 2 cut(s) | 70, 834 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1024, 1059 |
| CviAII | CATG | 4 cut(s) | 279, 383, 651, 1102 |
| CviQI | GTAC | 2 cut(s) | 70, 834 |
| DdeI | CTNAG | 3 cut(s) | 411, 536, 1061 |
| DpnI | GATC | 3 cut(s) | 215, 605, 660 |
| DpnII | GATC | 3 cut(s) | 213, 603, 658 |
| EaeI | YGGCCR | 1 cut(s) | 379 |
| Eam1104I | CTCTTC | 1 cut(s) | 56 |
| EarI | CTCTTC | 1 cut(s) | 56 |
| Eco130I | CCWWGG | 2 cut(s) | 382, 1101 |
| Eco91I | GGTNACC | 1 cut(s) | 518 |
| EcoO109I | RGGNCCY | 1 cut(s) | 105 |
| EcoO65I | GGTNACC | 1 cut(s) | 518 |
| EcoRII | CCWGG | 1 cut(s) | 823 |
| EcoT14I | CCWWGG | 2 cut(s) | 382, 1101 |
| ErhI | CCWWGG | 2 cut(s) | 382, 1101 |
| FaeI | CATG | 4 cut(s) | 282, 386, 654, 1105 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 92, 124 |
| FaqI | GGGAC | 1 cut(s) | 1093 |
| FatI | CATG | 4 cut(s) | 278, 382, 650, 1101 |
| FauI | CCCGC | 2 cut(s) | 31, 327 |
| FauNDI | CATATG | 1 cut(s) | 631 |
| FblI | GTMKAC | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 918, 921 |
| FokI | GGATG | 7 cut(s) | 263, 537, 598, 830, 987, 1088, 1109 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 918, 921 |
| FspBI | CTAG | 1 cut(s) | 200 |
| GlaI | GCGC | 1 cut(s) | 1091 |
| GluI | GCNGC | 3 cut(s) | 6, 918, 921 |
| GsaI | CCCAGC | 3 cut(s) | 277, 510, 1096 |
| GsuI | CTGGAG | 1 cut(s) | 333 |
| HaeII | RGCGCY | 1 cut(s) | 1093 |
| HaeIII | GGCC | 2 cut(s) | 106, 381 |
| HapII | CCGG | 1 cut(s) | 866 |
| HhaI | GCGC | 1 cut(s) | 1092 |
| Hin1II | CATG | 4 cut(s) | 282, 386, 654, 1105 |
| Hin6I | GCGC | 1 cut(s) | 1090 |
| HinP1I | GCGC | 1 cut(s) | 1090 |
| HincII | GTYRAC | 3 cut(s) | 733, 778, 841 |
| HindII | GTYRAC | 3 cut(s) | 733, 778, 841 |
| HinfI | GANTC | 6 cut(s) | 75, 137, 254, 389, 409, 455 |
| HpaII | CCGG | 1 cut(s) | 866 |
| HphI | GGTGA | 3 cut(s) | 193, 512, 764 |
| Hpy166II | GTNNAC | 6 cut(s) | 44, 190, 544, 733, 778, 841 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 559 |
| Hpy188III | TCNNGA | 5 cut(s) | 200, 406, 535, 625, 866 |
| Hpy8I | GTNNAC | 6 cut(s) | 44, 190, 544, 733, 778, 841 |
| HpyAV | CCTTC | 5 cut(s) | 197, 564, 805, 857, 932 |
| HpyCH4III | ACNGT | 6 cut(s) | 166, 187, 598, 737, 819, 838 |
| HpyCH4IV | ACGT | 2 cut(s) | 153, 1037 |
| HpyCH4V | TGCA | 6 cut(s) | 226, 282, 575, 691, 917, 989 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 14, 275, 279 |
| HpyF3I | CTNAG | 3 cut(s) | 411, 536, 1061 |
| HpySE526I | ACGT | 2 cut(s) | 153, 1037 |
| Hsp92II | CATG | 4 cut(s) | 282, 386, 654, 1105 |
| HspAI | GCGC | 1 cut(s) | 1090 |
| Kpn2I | TCCGGA | 1 cut(s) | 865 |
| Kzo9I | GATC | 3 cut(s) | 213, 603, 658 |
| LmnI | GCTCC | 2 cut(s) | 28, 93 |
| Lsp1109I | GCAGC | 2 cut(s) | 907, 929 |
| LweI | GCATC | 1 cut(s) | 1087 |
| MaeI | CTAG | 1 cut(s) | 200 |
| MaeII | ACGT | 2 cut(s) | 153, 1037 |
| MaeIII | GTNAC | 4 cut(s) | 76, 181, 426, 518 |
| MalI | GATC | 3 cut(s) | 215, 605, 660 |
| MboI | GATC | 3 cut(s) | 213, 603, 658 |
| MboII | GAAGA | 5 cut(s) | 73, 148, 254, 370, 653 |
| MflI | RGATCY | 2 cut(s) | 603, 658 |
| MlsI | TGGCCA | 1 cut(s) | 381 |
| MluCI | AATT | 8 cut(s) | 318, 570, 671, 692, 786, 984, 1020, 1108 |
| MluNI | TGGCCA | 1 cut(s) | 381 |
| MlyI | GAGTC | 5 cut(s) | 84, 131, 263, 403, 464 |
| MmeI | TCCRAC | 2 cut(s) | 6, 701 |
| Mox20I | TGGCCA | 1 cut(s) | 381 |
| MroI | TCCGGA | 1 cut(s) | 865 |
| MroXI | GAANNNNTTC | 1 cut(s) | 620 |
| MscI | TGGCCA | 1 cut(s) | 381 |
| MseI | TTAA | 3 cut(s) | 321, 600, 1114 |
| MslI | CAYNNNNRTG | 2 cut(s) | 525, 912 |
| Msp20I | TGGCCA | 1 cut(s) | 381 |
| MspA1I | CMGCKG | 2 cut(s) | 920, 1065 |
| MspI | CCGG | 1 cut(s) | 866 |
| MspR9I | CCNGG | 1 cut(s) | 825 |
| MvaI | CCWGG | 1 cut(s) | 825 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 14, 275, 279 |
| NcoI | CCATGG | 2 cut(s) | 382, 1101 |
| NdeI | CATATG | 1 cut(s) | 631 |
| NdeII | GATC | 3 cut(s) | 213, 603, 658 |
| NlaIII | CATG | 4 cut(s) | 282, 386, 654, 1105 |
| NlaIV | GGNNCC | 3 cut(s) | 30, 89, 801 |
| NmuCI | GTSAC | 4 cut(s) | 76, 181, 426, 518 |
| NspI | RCATGY | 1 cut(s) | 282 |
| PaeI | GCATGC | 1 cut(s) | 282 |
| PaqCI | CACCTGC | 1 cut(s) | 503 |
| PdmI | GAANNNNTTC | 1 cut(s) | 620 |
| PfeI | GAWTC | 1 cut(s) | 389 |
| PkrI | GCNGC | 3 cut(s) | 7, 919, 922 |
| PleI | GAGTC | 5 cut(s) | 83, 131, 262, 403, 463 |
| PpsI | GAGTC | 5 cut(s) | 83, 131, 262, 403, 463 |
| PshBI | ATTAAT | 1 cut(s) | 321 |
| Psp6I | CCWGG | 1 cut(s) | 823 |
| PspEI | GGTNACC | 1 cut(s) | 518 |
| PspFI | CCCAGC | 3 cut(s) | 273, 506, 1092 |
| PspGI | CCWGG | 1 cut(s) | 823 |
| PspN4I | GGNNCC | 3 cut(s) | 30, 89, 801 |
| PspPI | GGNCC | 1 cut(s) | 105 |
| PsuI | RGATCY | 2 cut(s) | 603, 658 |
| PvuII | CAGCTG | 2 cut(s) | 920, 1065 |
| RsaI | GTAC | 2 cut(s) | 71, 835 |
| RsaNI | GTAC | 2 cut(s) | 70, 834 |
| RseI | CAYNNNNRTG | 2 cut(s) | 525, 912 |
| SaqAI | TTAA | 3 cut(s) | 321, 600, 1114 |
| SatI | GCNGC | 3 cut(s) | 6, 918, 921 |
| Sau3AI | GATC | 3 cut(s) | 213, 603, 658 |
| Sau96I | GGNCC | 1 cut(s) | 105 |
| SchI | GAGTC | 5 cut(s) | 84, 131, 263, 403, 464 |
| ScrFI | CCNGG | 1 cut(s) | 825 |
| SetI | ASST | 7 cut(s) | 156, 275, 517, 746, 922, 1040, 1067 |
| SfaNI | GCATC | 1 cut(s) | 1087 |
| SfcI | CTRYAG | 1 cut(s) | 924 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 525, 912 |
| SphI | GCATGC | 1 cut(s) | 282 |
| Sse9I | AATT | 8 cut(s) | 318, 570, 671, 692, 786, 984, 1020, 1108 |
| SsiI | CCGC | 4 cut(s) | 5, 38, 334, 523 |
| SspMI | CTAG | 1 cut(s) | 200 |
| StyD4I | CCNGG | 1 cut(s) | 823 |
| StyI | CCWWGG | 2 cut(s) | 382, 1101 |
| TaaI | ACNGT | 6 cut(s) | 166, 187, 598, 737, 819, 838 |
| TaiI | ACGT | 2 cut(s) | 156, 1040 |
| TaqI | TCGA | 2 cut(s) | 135, 568 |
| TasI | AATT | 8 cut(s) | 318, 570, 671, 692, 786, 984, 1020, 1108 |
| TatI | WGTACW | 1 cut(s) | 69 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 1 cut(s) | 389 |
| Tru1I | TTAA | 3 cut(s) | 321, 600, 1114 |
| Tru9I | TTAA | 3 cut(s) | 321, 600, 1114 |
| TscAI | CASTG | 3 cut(s) | 39, 271, 601 |
| TseFI | GTSAC | 4 cut(s) | 76, 181, 426, 518 |
| TseI | GCWGC | 2 cut(s) | 917, 920 |
| Tsp45I | GTSAC | 4 cut(s) | 76, 181, 426, 518 |
| TspRI | CASTG | 3 cut(s) | 39, 271, 601 |
| VspI | ATTAAT | 1 cut(s) | 321 |
| XapI | RAATTY | 2 cut(s) | 671, 1108 |
| XbaI | TCTAGA | 1 cut(s) | 199 |
| XceI | RCATGY | 1 cut(s) | 282 |
| XmiI | GTMKAC | 1 cut(s) | 189 |
| XmnI | GAANNNNTTC | 1 cut(s) | 620 |
| XspI | CTAG | 1 cut(s) | 200 |