Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002521.1

Orthogroup ID

OG0009336

Physical Location & Seq

Genomic Coordinates Reverse (-)

2685 .. 5237

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002521.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggccaagttcgctttaggatcggaaccggtggtgggctccctctcatcctcaaagaagagagagtacagagtcaccaaccgcctccaagagggcaagaaacccatatacgccgtcgttttcaacttcatcgactctcgctacttcaacgtcttcgccaccgtcggcggcaaccgggtgactgtgtatgaatgcttagaagggggagtgatagctgtgttgcagtcttacattgatgaagataaggatgagtctttttacactgtgagctgggcatgcaacgttgatggaacaccgttgcttgtggctggaggattcaatggtacgatgcgtgtcattgattgtggcagtgagaagatagacaagagttttgttggccatggtgactcgataaacgaaatcaggactcagccattgaagtcatcacttgtagtgtcagcaagcaaagatgagtcagttcgactatggaatgttcatactggaatatgtattttgatattcgctggagcagggggtcatcgaaatgaagtcttgagtgtggacttccatccatctgatatttatcgcattgcaagttgtggcatggacaacacaattaagatatggtcgatgaaaggtaagacttcatggttgtctcatcctcaatcaaaatctccaattagacaaactgccatgtcctttgatggaagcaccattctcagctgctgtgaggacggcactatttggcgctgggatgtcatggaaaattcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009266 GO:0009409 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009960 GO:0009987 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071695 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090567 GO:0090568 GO:0090696 GO:0097437 GO:0099402 GO:0140110 GO:1901360 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

250

Amino Acids

27.59

Weight (kDa)

6.22

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20740
fragaria_vesca	FvH4_3g21810 FvH4_3g21810
malus_domestica	MD03G1211700.v1.1 MD11G1227100.v1.1
prunus_persica	Prupe.4G202200_v2.0.a1
pyrus_communis	pycom03g16040 pycom11g19970
rosa_chinensis	RchiOBHm_Chr5g0037411
rosa_laevigata	RLG00000033781
rosa_multiflora	Rmu_sc0002271.1_g000032 Rmu_sc0002521.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043500 Rroxscaffold_1G00043570
rosa_rugosa	Rorug05G0165100 Rorug05G0165200 Rorug05G0165300
rosa_samantha	Rh5AG254300 Rh5BG256300 Rh5DG264600
rosa_wichuraiana	Rw5G023520 Rw5G023540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 168
AclI	AACGTT	1 cut(s)	282
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	2 cut(s)	3, 376
AcsI	RAATTY	1 cut(s)	745
AfaI	GTAC	2 cut(s)	68, 325
AfiI	CCNNNNNNNGG	2 cut(s)	35, 91
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	124, 148, 319, 418
AluBI	AGCT	3 cut(s)	215, 270, 702
AluI	AGCT	3 cut(s)	215, 270, 702
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	705
AoxI	GGCC	2 cut(s)	3, 376
ApeKI	GCWGC	1 cut(s)	702
ApoI	RAATTY	1 cut(s)	745
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AsiGI	ACCGGT	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	729
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	67, 190, 395
BalI	TGGCCA	2 cut(s)	5, 378
BanII	GRGCYC	1 cut(s)	41
BarI	GAAGNNNNNNTAC	2 cut(s)	50, 82
BbsI	GAAGAC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	689
BccI	CCATC	4 cut(s)	281, 555, 559, 677
BceAI	ACGGC	2 cut(s)	98, 730
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	730
BisI	GCNGC	2 cut(s)	169, 703
BlsI	GCNGC	2 cut(s)	170, 704
Bme1390I	CCNGG	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	27, 40
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	2 cut(s)	330, 525
BpuEI	CTTGAG	1 cut(s)	553
BpuMI	CCSGG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 91
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	5 cut(s)	47, 253, 547, 637, 739
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	2 cut(s)	35, 91
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	2 cut(s)	422, 712
BseNI	ACTGG	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	689
BseYI	CCCAGC	2 cut(s)	270, 729
BshFI	GGCC	2 cut(s)	5, 378
BshTI	ACCGGT	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	29, 175
BslI	CCNNNNNNNGG	2 cut(s)	35, 91
BsmAI	GTCTC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	5, 378
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	20
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	2 cut(s)	82, 168
BspANI	GGCC	2 cut(s)	5, 378
BspCNI	CTCAG	2 cut(s)	421, 711
BspLI	GGNNCC	2 cut(s)	27, 40
BspPI	GGATC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	4 cut(s)	163, 184, 265, 297
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	277, 442
BstDEI	CTNAG	3 cut(s)	196, 408, 698
BstDSI	CCRYGG	1 cut(s)	379
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	5 cut(s)	47, 253, 547, 637, 739
BstH2I	RGCGCY	1 cut(s)	730
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 276
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	689
BstV2I	GAAGAC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	5, 378
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	5 cut(s)	47, 253, 547, 637, 739
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	261, 355
Cac8I	GCNNGC	2 cut(s)	277, 442
CaiI	CAGNNNCTG	1 cut(s)	705
CfoI	GCGC	1 cut(s)	729
Cfr10I	RCCGGY	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	67, 324
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	6 cut(s)	276, 380, 583, 627, 673, 739
CviJI	RGCY	8 cut(s)	5, 39, 215, 270, 308, 378, 412, 702
CviKI_1	RGCY	8 cut(s)	5, 39, 215, 270, 308, 378, 412, 702
CviQI	GTAC	2 cut(s)	67, 324
DdeI	CTNAG	3 cut(s)	196, 408, 698
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EaeI	YGGCCR	2 cut(s)	3, 376
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	6 cut(s)	279, 383, 586, 630, 676, 742
FatI	CATG	6 cut(s)	275, 379, 582, 626, 672, 738
Fnu4HI	GCNGC	2 cut(s)	169, 703
FokI	GGATG	5 cut(s)	34, 260, 534, 624, 746
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	169, 703
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	2 cut(s)	169, 703
GsaI	CCCAGC	2 cut(s)	274, 733
GsuI	CTGGAG	2 cut(s)	330, 525
HaeII	RGCGCY	1 cut(s)	730
HaeIII	GGCC	2 cut(s)	5, 378
HapII	CCGG	2 cut(s)	29, 175
HhaI	GCGC	1 cut(s)	729
Hin1II	CATG	6 cut(s)	279, 383, 586, 630, 676, 742
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HinfI	GANTC	7 cut(s)	72, 134, 251, 315, 386, 406, 452
HpaII	CCGG	2 cut(s)	29, 175
HphI	GGTGA	3 cut(s)	67, 190, 395
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	2 cut(s)	25, 556
Hpy188III	TCNNGA	2 cut(s)	403, 532
Hpy8I	GTNNAC	1 cut(s)	541
Hpy99I	CGWCG	2 cut(s)	119, 167
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	4 cut(s)	163, 184, 265, 297
HpyCH4IV	ACGT	2 cut(s)	150, 282
HpyCH4V	TGCA	3 cut(s)	223, 279, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 276
HpyF3I	CTNAG	3 cut(s)	196, 408, 698
HpySE526I	ACGT	2 cut(s)	150, 282
Hsp92II	CATG	6 cut(s)	279, 383, 586, 630, 676, 742
HspAI	GCGC	1 cut(s)	727
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	44, 506
LpnPI	CCDG	9 cut(s)	42, 188, 256, 294, 388, 465, 489, 495, 715
Lsp1109I	GCAGC	1 cut(s)	689
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	2 cut(s)	150, 282
MaeIII	GTNAC	3 cut(s)	73, 178, 383
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	4 cut(s)	70, 145, 251, 367
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	2 cut(s)	5, 378
MluCI	AATT	3 cut(s)	594, 657, 745
MluNI	TGGCCA	2 cut(s)	5, 378
MlyI	GAGTC	6 cut(s)	81, 128, 260, 380, 400, 461
MnlI	CCTC	7 cut(s)	53, 61, 85, 95, 305, 651, 703
Mox20I	TGGCCA	2 cut(s)	5, 378
MscI	TGGCCA	2 cut(s)	5, 378
MseI	TTAA	2 cut(s)	597, 751
MslI	CAYNNNNRTG	1 cut(s)	522
Msp20I	TGGCCA	2 cut(s)	5, 378
MspA1I	CMGCKG	1 cut(s)	702
MspI	CCGG	2 cut(s)	29, 175
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	11, 276
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	6 cut(s)	279, 383, 586, 630, 676, 742
NlaIV	GGNNCC	2 cut(s)	27, 40
NmuCI	GTSAC	3 cut(s)	73, 178, 383
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	315
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	170, 704
PleI	GAGTC	6 cut(s)	80, 128, 259, 380, 400, 460
PpsI	GAGTC	6 cut(s)	80, 128, 259, 380, 400, 460
Psp1406I	AACGTT	1 cut(s)	282
PspFI	CCCAGC	2 cut(s)	270, 729
PspN4I	GGNNCC	2 cut(s)	27, 40
PstNI	CAGNNNCTG	1 cut(s)	705
PvuII	CAGCTG	1 cut(s)	702
RsaI	GTAC	2 cut(s)	68, 325
RsaNI	GTAC	2 cut(s)	67, 324
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	597, 751
SatI	GCNGC	2 cut(s)	169, 703
Sau3AI	GATC	1 cut(s)	20
SchI	GAGTC	6 cut(s)	81, 128, 260, 380, 400, 461
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	153, 217, 272, 285, 619, 704
SfaNI	GCATC	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	3 cut(s)	594, 657, 745
SsiI	CCGC	2 cut(s)	82, 168
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	163, 184, 265, 297
TaiI	ACGT	2 cut(s)	153, 285
TaqI	TCGA	5 cut(s)	132, 389, 460, 520, 608
TasI	AATT	3 cut(s)	594, 657, 745
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	597, 751
Tru9I	TTAA	2 cut(s)	597, 751
TscAI	CASTG	2 cut(s)	268, 355
TseFI	GTSAC	3 cut(s)	73, 178, 383
TseI	GCWGC	1 cut(s)	702
Tsp45I	GTSAC	3 cut(s)	73, 178, 383
TspDTI	ATGAA	7 cut(s)	118, 204, 252, 464, 540, 615, 626
TspRI	CASTG	2 cut(s)	268, 355
XagI	CCTNNNNNAGG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	745
XceI	RCATGY	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.