Rorug05G0165200

Polycomb group protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009336
Physical Location & Seq
Reverse (-)
15300863 .. 15301528
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0165200.1

Sequence Viewer

Length: 666 bp
ATGGCAAGTTCTTTAGTATGTTTGGCATCTCTTTCCCTCGTCTTCATTTTCATCTCCATCCCTCTCCCGTACTCCACAGCTATCTCCTCCTGCAATGGCGCATGCAAAACCTTGAACGACTGTGCTGGTCAACTCATCTGTATCAACCAAAAATGCAACGATGACCCCGATGTTGGGACTCACATATGCGGCAGGGGTGGGGGAGGAGGCTCATCACCTTCTCCTAGCCCCAACAATTGCAGACCCTTTGGAACACTGGTTTGCAAGGGCAAGTCGTACCCTAAATACTCGTGCTCTCCCCCAGTAACATCATCCACCAAAGCCCTACTTACACTCAACGATTTCAGCGAAGGCGGTGATGGGGGCGGGCCATCAGAATGTGACGAACAATATCATCCAAACAGTGAGCGGGTTATGGCACTTCCCACTGGGTGGTTTGATAATAAATCGAGGTGCGGGAAGTTAATAAGAATTCAGGCAAGTAATGGGAAGACTACGACTGCGAGAGTGGTGGATGAATGTGATTCGCGAAATGGATGTGACAAAGAGCATGCAGGGCAGCCGACGTGTGAAAACAATATCGTGGATGGATCTGCATCTGTGTGGAACGCTTTGGGACTCGATCAGGATGTAGGTAAGGTGTCGGTGACTTGGTCCATGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009266 GO:0009409 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009960 GO:0009987 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071695 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090567 GO:0090568 GO:0090696 GO:0097437 GO:0099402 GO:0140110 GO:1901360 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

221

Amino Acids

23.14

Weight (kDa)

5.58

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 71 - 219 2.6e-54 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 432
AccBSI CCGCTC 1 cut(s) 409
AccII CGCG 1 cut(s) 529
AciI CCGC 5 cut(s) 189, 354, 366, 409, 456
AclWI GGATC 1 cut(s) 598
AcsI RAATTY 1 cut(s) 471
AdeI CACNNNGTG 1 cut(s) 432
AfaI GTAC 2 cut(s) 71, 278
AfiI CCNNNNNNNGG 3 cut(s) 173, 174, 432
AflIII ACRYGT 1 cut(s) 566
AgsI TTSAA 1 cut(s) 115
AjiI CACGTC 1 cut(s) 567
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 296
AlwI GGATC 1 cut(s) 598
AoxI GGCC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 559
ApoI RAATTY 1 cut(s) 471
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 368, 654
AsuHPI GGTGA 3 cut(s) 207, 368, 658
AvaII GGWCC 1 cut(s) 654
BauI CACGAG 1 cut(s) 289
BbsI GAAGAC 2 cut(s) 34, 497
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 571
BccI CCATC 4 cut(s) 65, 353, 379, 581
BfaI CTAG 1 cut(s) 225
BisI GCNGC 2 cut(s) 190, 560
BlsI GCNGC 2 cut(s) 191, 561
Bme18I GGWCC 1 cut(s) 654
BmgBI CACGTC 1 cut(s) 567
BmgT120I GGNCC 2 cut(s) 368, 654
BmrI ACTGGG 2 cut(s) 296, 438
BmsI GCATC 2 cut(s) 35, 605
BmuI ACTGGG 2 cut(s) 296, 438
BpiI GAAGAC 2 cut(s) 34, 497
BsaBI GATNNNNATC 1 cut(s) 595
BsaJI CCNNGG 1 cut(s) 657
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 174, 432
Bse1I ACTGG 3 cut(s) 261, 302, 433
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 595
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 7 cut(s) 57, 311, 394, 520, 542, 592, 634
BseJI GATNNNNATC 1 cut(s) 595
BseLI CCNNNNNNNGG 3 cut(s) 173, 174, 432
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 3 cut(s) 261, 302, 433
BseRI GAGGAG 2 cut(s) 76, 219
BseXI GCAGC 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 529
BshFI GGCC 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 296
BslFI GGGAC 2 cut(s) 190, 630
BslI CCNNNNNNNGG 3 cut(s) 173, 174, 432
BsmFI GGGAC 2 cut(s) 190, 630
BsnI GGCC 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 590, 622
Bsp19I CCATGG 1 cut(s) 657
Bsp68I TCGCGA 1 cut(s) 529
BspACI CCGC 5 cut(s) 189, 354, 366, 409, 456
BspANI GGCC 1 cut(s) 370
BspFNI CGCG 1 cut(s) 529
BspPI GGATC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 3 cut(s) 261, 302, 433
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 2 cut(s) 590, 622
BssSI CACGAG 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 657
Bst2BI CACGAG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 122, 404
BstC8I GCNNGC 3 cut(s) 103, 368, 552
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 7 cut(s) 57, 311, 394, 520, 542, 592, 634
BstFNI CGCG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 593, 625
BstMBI GATC 2 cut(s) 590, 622
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNSI RCATGY 2 cut(s) 105, 554
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 1 cut(s) 571
BstV2I GAAGAC 2 cut(s) 34, 497
BstX2I RGATCY 1 cut(s) 590
BstYI RGATCY 1 cut(s) 590
BsuRI GGCC 1 cut(s) 370
BtgI CCRYGG 1 cut(s) 657
BtrI CACGTC 1 cut(s) 567
BtsCI GGATG 7 cut(s) 57, 311, 394, 520, 542, 592, 634
BtsIMutI CAGTG 3 cut(s) 254, 409, 426
BtuMI TCGCGA 1 cut(s) 529
Cac8I GCNNGC 3 cut(s) 103, 368, 552
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 368, 654
Csp6I GTAC 2 cut(s) 70, 277
CviAII CATG 4 cut(s) 102, 551, 658, 663
CviJI RGCY 6 cut(s) 80, 210, 228, 323, 370, 562
CviKI_1 RGCY 6 cut(s) 80, 210, 228, 323, 370, 562
CviQI GTAC 2 cut(s) 70, 277
DpnI GATC 2 cut(s) 592, 624
DpnII GATC 2 cut(s) 590, 622
DraIII CACNNNGTG 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 4 cut(s) 105, 554, 661, 666
FaiI YATR 8 cut(s) 19, 103, 185, 187, 416, 552, 659, 664
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 2 cut(s) 190, 630
FatI CATG 4 cut(s) 101, 550, 657, 662
FauI CCCGC 3 cut(s) 359, 402, 449
FauNDI CATATG 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 190, 560
FokI GGATG 7 cut(s) 44, 298, 381, 527, 549, 599, 641
Fsp4HI GCNGC 2 cut(s) 190, 560
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 100
GluI GCNGC 2 cut(s) 190, 560
HaeIII GGCC 1 cut(s) 370
HhaI GCGC 1 cut(s) 101
Hin1II CATG 4 cut(s) 105, 554, 661, 666
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 3 cut(s) 178, 524, 618
HphI GGTGA 3 cut(s) 207, 368, 658
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 528, 626
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 568
HpyAV CCTTC 2 cut(s) 228, 344
HpyCH4III ACNGT 2 cut(s) 122, 404
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 7 cut(s) 93, 105, 156, 240, 264, 554, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 4 cut(s) 105, 554, 661, 666
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 590, 622
LpnPI CCDG 9 cut(s) 103, 111, 178, 242, 315, 414, 461, 540, 611
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 2 cut(s) 35, 605
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 4 cut(s) 304, 380, 539, 646
MalI GATC 2 cut(s) 592, 624
MbiI CCGCTC 1 cut(s) 409
MboI GATC 2 cut(s) 590, 622
MboII GAAGA 2 cut(s) 34, 502
MfeI CAATTG 1 cut(s) 235
MflI RGATCY 1 cut(s) 590
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 2 cut(s) 235, 471
MlyI GAGTC 2 cut(s) 172, 612
MnlI CCTC 6 cut(s) 47, 72, 97, 197, 200, 444
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 2 cut(s) 376, 601
MunI CAATTG 1 cut(s) 235
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 1 cut(s) 556
NcoI CCATGG 1 cut(s) 657
NdeI CATATG 1 cut(s) 185
NdeII GATC 2 cut(s) 590, 622
NlaIII CATG 4 cut(s) 105, 554, 661, 666
NmuCI GTSAC 3 cut(s) 380, 539, 646
NruI TCGCGA 1 cut(s) 529
NspI RCATGY 2 cut(s) 105, 554
PaeI GCATGC 2 cut(s) 105, 554
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 345
PfeI GAWTC 1 cut(s) 524
PflFI GACNNNGTC 1 cut(s) 652
PflMI CCANNNNNTGG 1 cut(s) 432
PkrI GCNGC 2 cut(s) 191, 561
PleI GAGTC 2 cut(s) 172, 612
PpsI GAGTC 2 cut(s) 172, 612
PspPI GGNCC 2 cut(s) 368, 654
PsuI RGATCY 1 cut(s) 590
PsyI GACNNNGTC 1 cut(s) 652
RruI TCGCGA 1 cut(s) 529
RsaI GTAC 2 cut(s) 71, 278
RsaNI GTAC 2 cut(s) 70, 277
RseI CAYNNNNRTG 2 cut(s) 376, 601
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 2 cut(s) 190, 560
Sau3AI GATC 2 cut(s) 590, 622
Sau96I GGNCC 2 cut(s) 368, 654
SchI GAGTC 2 cut(s) 172, 612
SduI GDGCHC 1 cut(s) 296
SetI ASST 7 cut(s) 82, 113, 220, 455, 569, 637, 642
SfaNI GCATC 2 cut(s) 35, 605
SinI GGWCC 1 cut(s) 654
SmiMI CAYNNNNRTG 2 cut(s) 376, 601
SphI GCATGC 2 cut(s) 105, 554
Sse9I AATT 2 cut(s) 235, 471
SsiI CCGC 5 cut(s) 189, 354, 366, 409, 456
SspMI CTAG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 2 cut(s) 122, 404
TaiI ACGT 1 cut(s) 569
TaqI TCGA 2 cut(s) 449, 621
TasI AATT 2 cut(s) 235, 471
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 3 cut(s) 261, 409, 433
TseFI GTSAC 3 cut(s) 380, 539, 646
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 3 cut(s) 380, 539, 646
TspDTI ATGAA 3 cut(s) 34, 40, 531
TspRI CASTG 3 cut(s) 261, 409, 433
Tth111I GACNNNGTC 1 cut(s) 652
Van91I CCANNNNNTGG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 654
XapI RAATTY 1 cut(s) 471
XceI RCATGY 2 cut(s) 105, 554
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.