Rh5BG256300

Polycomb group protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0009336
Physical Location & Seq
Reverse (-)
31954006 .. 31958344
4339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG256300.1

Sequence Viewer

Length: 1071 bp
ATGGCCAAGTTCGCTTTAGGATCGGAACCGGTGGTGGGCTCCCTCTCATCCTCAAAGAAGAGAGAGTACAGAGTCACCAACCGCCTCCAAGAGGGCAAGAAACCCATATACGCCGTCGTTTTCAACTTCATCGACTCTCGCTACTTCAACGTCTTCGCCACCGTCGGCGGCAACCGGGTGACTGTGTATGAATGCTTAGAAGGGGGAGTGATAGCTGTGTTGCAGTCTTACATTGATGAAGATAAGGATGAGTCTTTTTACACTGTGAGCTGGGCATGCAACGTTGATGGAACACCGTTGCTTGTGGCTGGAGGATTCAATGGTACGATGCGTGTCATTGATTGTGGCAGTGAGAAGATAGACAAGAGTTTTGTTGGCCATGGTGACTCGATAAACGAAATCAGGACTCAGCCATTGAAGTCATCACTTGTAGTGTCAGCAAGCAAAGATGAGTCAGTTCGACTATGGAATGTTCATACTGGAATATGTATTTTGATATTCGCTGGAGCAGGGGGTCATCGAAATGAAGTCTTGAGTGTGGACTTCCATCCATCTGACATTTATCGCATTGCAAGTTGTGGCATGGATAACACAATTAAGATATGGTCGATGAAAGAGTTCTGGACATATGTAGAGAAGTCTTTCACATGGACAGATCTTCCATCAAAATTCCCTACAAAATACGTTCAATTTCCTGTATTCCTAGCCTCCATTCACACAAACTATGTTGACTGTAATAGGTGGCTTGGAGATTTTATGCTCTCAAAGAGTGTTGACAGTGAAATTGTGCTATGGGAACCAAAAATGAAGGAGCAGTCTCCCGGGGAGGGCACCGTTGACATCCTGCAAAAGTACCCTGTTCCAGGGTGTGATATTTGGTTCATCAAGTTTTCCTGTGATTTCCATTATAATGCAGCTGCTATAGGTAATGCAAAGTGTATTGTGAAGTTCTGTTACATGGTTGGAGTTACAGTTTACACTAGTTTGTTTTATAGTTTTTTGAAGATTCAGAAACACTGGCCAATTGTAGCACAATTATATGCAGACTACTTAGTCTCTATACTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009266 GO:0009409 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009960 GO:0009987 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071695 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090567 GO:0090568 GO:0090696 GO:0097437 GO:0099402 GO:0140110 GO:1901360 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

356

Amino Acids

40.15

Weight (kDa)

6.39

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 41 - 207 1.1e-11 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 85 - 164 3.5e-11 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 95 - 164 5.4e-07 WDHD1 first WD40 domain
WD40_Prp19 PF24814 98 - 207 2.5e-14 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 100 - 205 1.5e-16 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 100 - 203 1.7e-14 WDR3 first beta-propeller domain
WDR55 PF24796 101 - 207 7.7e-06 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 109 - 211 2.3e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd PF25172 141 - 207 4e-06 WDR3 second beta-propeller domain
WD40 PF00400 172 - 203 1.8e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
AasI GACNNNNNNGTC 1 cut(s) 1052
AccB1I GGYRCC 1 cut(s) 830
AciI CCGC 2 cut(s) 82, 168
AclI AACGTT 1 cut(s) 282
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 3 cut(s) 3, 376, 1019
AcsI RAATTY 1 cut(s) 668
AfaI GTAC 3 cut(s) 68, 325, 854
AfiI CCNNNNNNNGG 4 cut(s) 35, 91, 827, 863
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 6 cut(s) 124, 148, 319, 418, 689, 1003
AhlI ACTAGT 1 cut(s) 980
AjnI CCWGG 1 cut(s) 862
AluBI AGCT 3 cut(s) 215, 270, 917
AluI AGCT 3 cut(s) 215, 270, 917
Alw26I GTCTC 2 cut(s) 822, 1060
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 821
AoxI GGCC 3 cut(s) 3, 376, 1019
ApeKI GCWGC 2 cut(s) 914, 917
ApoI RAATTY 1 cut(s) 668
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AsiGI ACCGGT 1 cut(s) 28
Asp700I GAANNNNTTC 2 cut(s) 617, 641
AsuC2I CCSGG 3 cut(s) 176, 822, 823
AsuHPI GGTGA 3 cut(s) 67, 190, 395
AvaI CYCGRG 1 cut(s) 821
BaeGI GKGCMC 1 cut(s) 833
BalI TGGCCA 3 cut(s) 5, 378, 1021
BanI GGYRCC 1 cut(s) 830
BanII GRGCYC 1 cut(s) 41
BarI GAAGNNNNNNTAC 4 cut(s) 50, 82, 938, 970
BbsI GAAGAC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 904, 926
BccI CCATC 4 cut(s) 281, 555, 559, 670
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 864
BcnI CCSGG 3 cut(s) 176, 822, 823
BcoDI GTCTC 2 cut(s) 822, 1060
BcuI ACTAGT 1 cut(s) 980
BfaI CTAG 2 cut(s) 704, 981
BfmI CTRYAG 1 cut(s) 921
BglII AGATCT 1 cut(s) 655
BisI GCNGC 3 cut(s) 169, 915, 918
BlsI GCNGC 3 cut(s) 170, 916, 919
Bme1390I CCNGG 4 cut(s) 176, 822, 823, 864
BmeT110I CYCGRG 1 cut(s) 821
BmiI GGNNCC 4 cut(s) 27, 40, 798, 832
BmrFI CCNGG 4 cut(s) 176, 822, 823, 864
BmsI GCATC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 2 cut(s) 330, 525
BpuEI CTTGAG 1 cut(s) 553
BpuMI CCSGG 3 cut(s) 176, 822, 823
BsaJI CCNNGG 4 cut(s) 379, 821, 822, 863
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 91, 827, 863
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 484, 1022
Bse3DI GCAATG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 4 cut(s) 379, 821, 822, 863
BseGI GGATG 4 cut(s) 47, 253, 547, 840
BseLI CCNNNNNNNGG 4 cut(s) 35, 91, 827, 863
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 2 cut(s) 484, 1022
BseSI GKGCMC 1 cut(s) 833
BseXI GCAGC 2 cut(s) 904, 926
BseYI CCCAGC 1 cut(s) 270
BshFI GGCC 3 cut(s) 5, 378, 1021
BshNI GGYRCC 1 cut(s) 830
BshTI ACCGGT 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 821
BsiSI CCGG 3 cut(s) 29, 175, 822
BslI CCNNNNNNNGG 4 cut(s) 35, 91, 827, 863
BsmAI GTCTC 2 cut(s) 822, 1060
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 3 cut(s) 5, 378, 1021
BsoBI CYCGRG 1 cut(s) 821
Bsp1286I GDGCHC 2 cut(s) 41, 833
Bsp143I GATC 2 cut(s) 20, 655
Bsp19I CCATGG 1 cut(s) 379
BspACI CCGC 2 cut(s) 82, 168
BspANI GGCC 3 cut(s) 5, 378, 1021
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 4 cut(s) 27, 40, 798, 832
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 2 cut(s) 484, 1022
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 379, 821, 822, 863
BssMI GATC 2 cut(s) 20, 655
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 8 cut(s) 163, 184, 265, 297, 734, 779, 835, 973
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 277, 442
BstDEI CTNAG 3 cut(s) 196, 408, 1051
BstDSI CCRYGG 1 cut(s) 379
BstENI CCTNNNNNAGG 2 cut(s) 89, 861
BstF5I GGATG 4 cut(s) 47, 253, 547, 840
BstKTI GATC 2 cut(s) 23, 658
BstMAI GTCTC 2 cut(s) 822, 1060
BstMBI GATC 2 cut(s) 20, 655
BstMWI GCNNNNNNNGC 2 cut(s) 11, 276
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 4 cut(s) 174, 820, 821, 862
BstSFI CTRYAG 1 cut(s) 921
BstSLI GKGCMC 1 cut(s) 833
BstV1I GCAGC 2 cut(s) 904, 926
BstV2I GAAGAC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 3 cut(s) 5, 378, 1021
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 4 cut(s) 47, 253, 547, 840
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 4 cut(s) 261, 355, 784, 1015
Cac8I GCNNGC 2 cut(s) 277, 442
Cfr10I RCCGGY 1 cut(s) 28
Cfr9I CCCGGG 1 cut(s) 821
Csp6I GTAC 3 cut(s) 67, 324, 853
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 5 cut(s) 276, 380, 583, 648, 958
CviQI GTAC 3 cut(s) 67, 324, 853
DdeI CTNAG 3 cut(s) 196, 408, 1051
DpnI GATC 2 cut(s) 22, 657
DpnII GATC 2 cut(s) 20, 655
DrdI GACNNNNNNGTC 1 cut(s) 1052
DseDI GACNNNNNNGTC 1 cut(s) 1052
EaeI YGGCCR 3 cut(s) 3, 376, 1019
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 821
EcoNI CCTNNNNNAGG 2 cut(s) 89, 861
EcoRII CCWGG 1 cut(s) 862
EcoT14I CCWWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 5 cut(s) 279, 383, 586, 651, 961
FatI CATG 5 cut(s) 275, 379, 582, 647, 957
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 3 cut(s) 169, 915, 918
FokI GGATG 4 cut(s) 34, 260, 534, 827
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 169, 915, 918
FspBI CTAG 2 cut(s) 704, 981
GluI GCNGC 3 cut(s) 169, 915, 918
GsaI CCCAGC 1 cut(s) 274
GsuI CTGGAG 2 cut(s) 330, 525
HaeIII GGCC 3 cut(s) 5, 378, 1021
HapII CCGG 3 cut(s) 29, 175, 822
Hin1II CATG 5 cut(s) 279, 383, 586, 651, 961
HincII GTYRAC 3 cut(s) 730, 775, 838
HindII GTYRAC 3 cut(s) 730, 775, 838
HinfI GANTC 8 cut(s) 72, 134, 251, 315, 386, 406, 452, 1006
HpaII CCGG 3 cut(s) 29, 175, 822
HphI GGTGA 3 cut(s) 67, 190, 395
Hpy166II GTNNAC 5 cut(s) 541, 730, 775, 838, 976
Hpy188I TCNGA 4 cut(s) 25, 556, 1011, 1070
Hpy188III TCNNGA 3 cut(s) 403, 532, 622
Hpy8I GTNNAC 5 cut(s) 541, 730, 775, 838, 976
Hpy99I CGWCG 2 cut(s) 119, 167
HpyAV CCTTC 2 cut(s) 194, 802
HpyCH4III ACNGT 8 cut(s) 163, 184, 265, 297, 734, 779, 835, 973
HpyCH4IV ACGT 3 cut(s) 150, 282, 684
HpyCH4V TGCA 7 cut(s) 223, 279, 572, 847, 914, 932, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 276
HpyF3I CTNAG 3 cut(s) 196, 408, 1051
HpySE526I ACGT 3 cut(s) 150, 282, 684
Hsp92II CATG 5 cut(s) 279, 383, 586, 651, 961
Kzo9I GATC 2 cut(s) 20, 655
LmnI GCTCC 3 cut(s) 44, 506, 811
Lsp1109I GCAGC 2 cut(s) 904, 926
LweI GCATC 1 cut(s) 318
MaeI CTAG 2 cut(s) 704, 981
MaeII ACGT 3 cut(s) 150, 282, 684
MaeIII GTNAC 5 cut(s) 73, 178, 383, 953, 967
MalI GATC 2 cut(s) 22, 657
MboI GATC 2 cut(s) 20, 655
MboII GAAGA 6 cut(s) 70, 145, 251, 367, 650, 1015
MfeI CAATTG 1 cut(s) 1023
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 2 cut(s) 41, 833
MlsI TGGCCA 3 cut(s) 5, 378, 1021
MluCI AATT 6 cut(s) 594, 668, 689, 783, 1023, 1034
MluNI TGGCCA 3 cut(s) 5, 378, 1021
MlyI GAGTC 6 cut(s) 81, 128, 260, 380, 400, 461
MmeI TCCRAC 1 cut(s) 943
MnlI CCTC 7 cut(s) 53, 61, 85, 95, 305, 718, 820
Mox20I TGGCCA 3 cut(s) 5, 378, 1021
MroXI GAANNNNTTC 2 cut(s) 617, 641
MscI TGGCCA 3 cut(s) 5, 378, 1021
MseI TTAA 1 cut(s) 597
MslI CAYNNNNRTG 2 cut(s) 522, 909
Msp20I TGGCCA 3 cut(s) 5, 378, 1021
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 3 cut(s) 29, 175, 822
MspR9I CCNGG 4 cut(s) 176, 822, 823, 864
MunI CAATTG 1 cut(s) 1023
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 1 cut(s) 864
MwoI GCNNNNNNNGC 2 cut(s) 11, 276
NciI CCSGG 3 cut(s) 176, 822, 823
NcoI CCATGG 1 cut(s) 379
NdeI CATATG 1 cut(s) 628
NdeII GATC 2 cut(s) 20, 655
NlaIII CATG 5 cut(s) 279, 383, 586, 651, 961
NlaIV GGNNCC 4 cut(s) 27, 40, 798, 832
NmuCI GTSAC 3 cut(s) 73, 178, 383
NspI RCATGY 1 cut(s) 279
PaeI GCATGC 1 cut(s) 279
PctI GAATGC 1 cut(s) 197
PdmI GAANNNNTTC 2 cut(s) 617, 641
PfeI GAWTC 2 cut(s) 315, 1006
PinAI ACCGGT 1 cut(s) 28
PkrI GCNGC 3 cut(s) 170, 916, 919
PleI GAGTC 6 cut(s) 80, 128, 259, 380, 400, 460
PpsI GAGTC 6 cut(s) 80, 128, 259, 380, 400, 460
PsiI TTATAA 1 cut(s) 909
Psp1406I AACGTT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 862
PspFI CCCAGC 1 cut(s) 270
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 4 cut(s) 27, 40, 798, 832
PsuI RGATCY 1 cut(s) 655
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 3 cut(s) 68, 325, 854
RsaNI GTAC 3 cut(s) 67, 324, 853
RseI CAYNNNNRTG 2 cut(s) 522, 909
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 3 cut(s) 169, 915, 918
Sau3AI GATC 2 cut(s) 20, 655
SchI GAGTC 6 cut(s) 81, 128, 260, 380, 400, 461
ScrFI CCNGG 4 cut(s) 176, 822, 823, 864
SduI GDGCHC 2 cut(s) 41, 833
SetI ASST 8 cut(s) 153, 217, 272, 285, 687, 743, 919, 928
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 921
SmaI CCCGGG 1 cut(s) 823
SmiMI CAYNNNNRTG 2 cut(s) 522, 909
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
SpeI ACTAGT 1 cut(s) 980
SphI GCATGC 1 cut(s) 279
Sse9I AATT 6 cut(s) 594, 668, 689, 783, 1023, 1034
SsiI CCGC 2 cut(s) 82, 168
SspMI CTAG 2 cut(s) 704, 981
StyD4I CCNGG 4 cut(s) 174, 820, 821, 862
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 8 cut(s) 163, 184, 265, 297, 734, 779, 835, 973
TaiI ACGT 3 cut(s) 153, 285, 687
TaqI TCGA 5 cut(s) 132, 389, 460, 520, 608
TasI AATT 6 cut(s) 594, 668, 689, 783, 1023, 1034
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 315, 1006
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 4 cut(s) 268, 355, 784, 1022
TseFI GTSAC 3 cut(s) 73, 178, 383
TseI GCWGC 2 cut(s) 914, 917
Tsp45I GTSAC 3 cut(s) 73, 178, 383
TspDTI ATGAA 8 cut(s) 118, 204, 252, 464, 540, 626, 821, 871
TspMI CCCGGG 1 cut(s) 821
TspRI CASTG 4 cut(s) 268, 355, 784, 1022
XagI CCTNNNNNAGG 2 cut(s) 89, 861
XapI RAATTY 1 cut(s) 668
XceI RCATGY 1 cut(s) 279
XmaI CCCGGG 1 cut(s) 821
XmnI GAANNNNTTC 2 cut(s) 617, 641
XspI CTAG 2 cut(s) 704, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.