Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011136

Physical Location & Seq

Genomic Coordinates Reverse (-)

15719601 .. 15721796

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22710.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTAGTTTGTGTGAGGGATTGTTTTCAGGCTTATTGGAGGGTGCATTGAGGTCTAAAGAGGTTGTTTCTTTGTGGGTTTTGACCACAATTGAGGGTTTAGGAAGTGGAGCTTTGGTTGGAGTCACTAAGAGAGTTCTTCTTGCTGCATTTACCTGCATTCTTGCAGTAGGAGGAGCTATAGTGGGAGCAATACATGGAGCCGTCAAAGGCCAGACAACAGAAACTGGGTTTGCTATTGGAGCCGGAATAGGCGGTATGGCGGGGGCTGTTGCTGCCATTCAACTTATGGATTTGGTTGCTCTCTTAGGTGGGATGGTAAATGGGAAGGTGTTTATGGAGTGGGTGAGCTCTGCACTGTTAAAAGCCTATCATTGGCAAGTTAGCACACTGGAGACTTACAGAGAGATTTCTGAACTCTATGAAATCACTGGAGTAAGAGGGTTGCCCCAAGAATGCATTCAAAATCTCCCTCGAAGTACATTTTGTTCTGGCGATGCCATCGAGTCTTACAATGAGTTCTGCTGCTCCATTTGCTTACAGGAATTGGAGGATGGAGAGTATACCAGAGAACTTCCCATCTGTAGGCACTTGTTTCACTTGGCCTGCATAGACCTATGGCTAAGGCGACAAGGCTCATGCCCTATGTGTAGAGTACTTGTCGCTGACAACACAAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

228

Amino Acids

24.31

Weight (kDa)

5.25

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	184 - 227	1.2e-12	Ring finger domain
zf-rbx1	PF12678	184 - 227	6e-09	RING-H2 zinc finger domain
zf-RING_11	PF17123	185 - 213	1e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	185 - 226	7.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	185 - 226	2.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20395
fragaria_vesca	FvH4_3g22710 FvH4_3g22710
malus_domestica	MD03G1200700.v1.1 MD11G1217700.v1.1
prunus_persica	Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1
pyrus_communis	pycom03g15220
rosa_chinensis	RchiOBHm_Chr5g0039601
rosa_laevigata	RLG00000033930
rosa_multiflora	Rmu_co8518197.1_g000001 Rmu_ssc0000400.1_g000013
rosa_roxburghii	Rroxscaffold_1G00041590
rosa_rugosa	Rorug05G0180200
rosa_samantha	Rh5AG267500 Rh5BG271800 Rh5CG304300 Rh5DG279500
rosa_wichuraiana	Rw5G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	2 cut(s)	255, 263
AfaI	GTAC	2 cut(s)	481, 657
AfiI	CCNNNNNNNGG	2 cut(s)	375, 585
AgsI	TTSAA	2 cut(s)	284, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AluBI	AGCT	3 cut(s)	113, 179, 351
AluI	AGCT	3 cut(s)	113, 179, 351
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	389
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	211, 603
ApeKI	GCWGC	3 cut(s)	146, 275, 525
Asp700I	GAANNNNTTC	1 cut(s)	459
AsuHPI	GGTGA	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	133, 262, 512
BccI	CCATC	4 cut(s)	310, 509, 548, 587
BceAI	ACGGC	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	2 cut(s)	180, 583
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	3 cut(s)	147, 276, 526
BlsI	GCNGC	3 cut(s)	148, 277, 527
BmcAI	AGTACT	1 cut(s)	657
BmiI	GGNNCC	2 cut(s)	202, 244
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	413, 453
Bpu10I	CCTNAGC	1 cut(s)	623
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 168, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 585
Bse1I	ACTGG	3 cut(s)	232, 396, 436
BseGI	GGATG	2 cut(s)	321, 559
BseLI	CCNNNNNNNGG	2 cut(s)	375, 585
BseNI	ACTGG	3 cut(s)	232, 396, 436
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	133, 262, 512
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	213, 605
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	375, 585
BsmAI	GTCTC	1 cut(s)	389
BsmI	GAATGC	3 cut(s)	159, 459, 461
BsnI	GGCC	2 cut(s)	213, 605
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	1 cut(s)	677
BspACI	CCGC	2 cut(s)	255, 263
BspANI	GGCC	2 cut(s)	213, 605
BspLI	GGNNCC	2 cut(s)	202, 244
BspMI	ACCTGC	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	232, 396, 436
BssMI	GATC	1 cut(s)	677
BssNAI	GTATAC	1 cut(s)	564
Bst1107I	GTATAC	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	607
BstDEI	CTNAG	3 cut(s)	129, 307, 623
BstF5I	GGATG	2 cut(s)	321, 559
BstKTI	GATC	1 cut(s)	680
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	677
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 275, 534
BstSFI	CTRYAG	2 cut(s)	180, 583
BstV1I	GCAGC	3 cut(s)	133, 262, 512
BstZ17I	GTATAC	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	213, 605
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	321, 559
BtsIMutI	CAGTG	3 cut(s)	356, 389, 429
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	607
CaiI	CAGNNNCTG	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	480, 656
CviAII	CATG	2 cut(s)	197, 639
CviQI	GTAC	2 cut(s)	480, 656
DdeI	CTNAG	3 cut(s)	129, 307, 623
DpnI	GATC	1 cut(s)	679
DpnII	GATC	1 cut(s)	677
Ecl136II	GAGCTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	351
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	2 cut(s)	200, 642
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FatI	CATG	2 cut(s)	196, 638
FauI	CCCGC	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	3 cut(s)	147, 276, 526
FokI	GGATG	2 cut(s)	328, 566
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	147, 276, 526
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	3 cut(s)	147, 276, 526
GsuI	CTGGAG	2 cut(s)	413, 453
HaeIII	GGCC	2 cut(s)	213, 605
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	2 cut(s)	200, 642
HinfI	GANTC	2 cut(s)	123, 506
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	1 cut(s)	415
Hpy8I	GTNNAC	1 cut(s)	564
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	7 cut(s)	47, 149, 159, 167, 356, 459, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 275, 534
HpyF3I	CTNAG	3 cut(s)	129, 307, 623
Hsp92II	CATG	2 cut(s)	200, 642
Kzo9I	GATC	1 cut(s)	677
LmnI	GCTCC	6 cut(s)	110, 176, 188, 200, 242, 533
Lsp1109I	GCAGC	3 cut(s)	133, 262, 512
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	679
MboI	GATC	1 cut(s)	677
MboII	GAAGA	1 cut(s)	131
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	2 cut(s)	90, 545
MlyI	GAGTC	2 cut(s)	132, 515
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	9 cut(s)	10, 34, 45, 55, 88, 167, 434, 483, 544
Mph1103I	ATGCAT	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	1 cut(s)	362
MspI	CCGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	90
Mva1269I	GAATGC	3 cut(s)	159, 459, 461
MwoI	GCNNNNNNNGC	3 cut(s)	242, 275, 534
NdeII	GATC	1 cut(s)	677
NlaIII	CATG	2 cut(s)	200, 642
NlaIV	GGNNCC	2 cut(s)	202, 244
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	461
PctI	GAATGC	3 cut(s)	159, 459, 461
PdmI	GAANNNNTTC	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	148, 277, 527
PleI	GAGTC	2 cut(s)	131, 514
PpsI	GAGTC	2 cut(s)	131, 514
Psp124BI	GAGCTC	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	202, 244
PsrI	GAACNNNNNNTAC	2 cut(s)	472, 504
PstNI	CAGNNNCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	481, 657
RsaNI	GTAC	2 cut(s)	480, 656
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	3 cut(s)	147, 276, 526
Sau3AI	GATC	1 cut(s)	677
ScaI	AGTACT	1 cut(s)	657
SchI	GAGTC	2 cut(s)	132, 515
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	9 cut(s)	56, 66, 115, 158, 181, 313, 333, 353, 618
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	2 cut(s)	180, 583
Sse9I	AATT	2 cut(s)	90, 545
SsiI	CCGC	2 cut(s)	255, 263
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	475, 504
TasI	AATT	2 cut(s)	90, 545
TatI	WGTACW	2 cut(s)	479, 655
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	3 cut(s)	363, 396, 436
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	146, 275, 525
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	3 cut(s)	363, 396, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	657
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.