Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011136

Physical Location & Seq

Genomic Coordinates Forward (+)

27427580 .. 27430090

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1200700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCTAGTTTTTGCATTTCTCCTCCTATGATGATGAAGGGGTGGTTTTCAGGGTTATTGAGAGCCGCATTCAGGTGTGAAGAGGTTGTTTCTTTGTGGGTTTTGGCTGCCATTGGCGATTCCAGCGGCGGAGCTTTGGGTCGAGTCACAAAACGAGTTGTTTTTGCTGCATATACCGGCATTCTTGCACTAGGAGGAGCTATAGTGGGAGCAATTCATGGAGCCATTAAAGGCCAGACGACGGAGACCGGGTTTATTAAAGGTGCCGGCATAGGCGGTTTGGCAGGGGCTATTGCTGCCATTCAATTGATGGATTTGGCAGTGGACGGCGAGTCGTTGTCTAAGGTTGCTTTCTTGGGTGGGATGGTAAATGGGAAGGTGTTTATGGAATGGGTGAATTCTTCATTGCTAAAAGCCTATCACTGGCAAGTTAGCAATCTGGAAACAACTTACAGAGAGATTTCTGATATCTATGACATTGCTGGAGTGAAGGGATTATCCCAGGATTGCATTCAAAAGCTCCCTCGAAGTACATTTTACAGCAGCAGCAGCAGCAGCAATATCATTGATTCATGCAGTGAATTTTGCTGCTCAATTTGCTTACAGGAATTGAAGGACGGAGAAAATGCAAGAGAACTTCCCATTTGTGGCCATATGTTTCACGTGGGATGCATAGACCAATGGCTAAAGCGACAAGCCTCTTGTCCTATGTGCAGACTACAAGTACACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

245

Amino Acids

26.15

Weight (kDa)

6.92

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	196 - 239	6.3e-14	Ring finger domain
zf-rbx1	PF12678	196 - 239	4.5e-09	RING-H2 zinc finger domain
zf-RING_11	PF17123	197 - 225	4.2e-10	RING-like zinc finger
zf-C3HC4	PF00097	197 - 238	2.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	197 - 238	1.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	197 - 236	5.5e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20395
fragaria_vesca	FvH4_3g22710 FvH4_3g22710
malus_domestica	MD03G1200700.v1.1 MD11G1217700.v1.1
prunus_persica	Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1
pyrus_communis	pycom03g15220
rosa_chinensis	RchiOBHm_Chr5g0039601
rosa_laevigata	RLG00000033930
rosa_multiflora	Rmu_co8518197.1_g000001 Rmu_ssc0000400.1_g000013
rosa_roxburghii	Rroxscaffold_1G00041590
rosa_rugosa	Rorug05G0180200
rosa_samantha	Rh5AG267500 Rh5BG271800 Rh5CG304300 Rh5DG279500
rosa_wichuraiana	Rw5G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	4 cut(s)	66, 126, 129, 276
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	397, 581
AcvI	CACGTG	1 cut(s)	664
AfaI	GTAC	2 cut(s)	532, 726
AfiI	CCNNNNNNNGG	4 cut(s)	72, 241, 423, 647
AgsI	TTSAA	3 cut(s)	305, 515, 613
AhdI	GACNNNNNGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	3 cut(s)	134, 200, 520
AluI	AGCT	3 cut(s)	134, 200, 520
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	232, 649
ApeKI	GCWGC	9 cut(s)	107, 167, 296, 543, 546, 549, 552, 555, 588
ApoI	RAATTY	2 cut(s)	397, 581
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	406
BalI	TGGCCA	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	263
BbrPI	CACGTG	1 cut(s)	664
BbvI	GCAGC	9 cut(s)	94, 154, 283, 555, 558, 561, 564, 567, 575
BccI	CCATC	2 cut(s)	304, 358
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	6, 191
BfmI	CTRYAG	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	250, 503
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	223, 265
BmrFI	CCNGG	2 cut(s)	250, 503
BmsI	GCATC	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	664
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	501
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 236, 266
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 241, 423, 647
Bse118I	RCCGGY	2 cut(s)	176, 266
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	2 cut(s)	404, 477
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	369, 674
BseLI	CCNNNNNNNGG	4 cut(s)	72, 241, 423, 647
BseMI	GCAATG	2 cut(s)	404, 477
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	2 cut(s)	12, 210
BseXI	GCAGC	9 cut(s)	94, 154, 283, 555, 558, 561, 564, 567, 575
BsgI	GTGCAG	1 cut(s)	733
BshFI	GGCC	2 cut(s)	234, 651
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	177, 249, 267
BslI	CCNNNNNNNGG	4 cut(s)	72, 241, 423, 647
BsmAI	GTCTC	1 cut(s)	239
BsmI	GAATGC	3 cut(s)	68, 180, 510
BsnI	GGCC	2 cut(s)	234, 651
Bso31I	GGTCTC	1 cut(s)	239
BspACI	CCGC	4 cut(s)	66, 126, 129, 276
BspANI	GGCC	2 cut(s)	234, 651
BspLI	GGNNCC	2 cut(s)	223, 265
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	404, 477
BsrFI	RCCGGY	2 cut(s)	176, 266
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	2 cut(s)	176, 266
BssECI	CCNNGG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	369, 674
BstMAI	GTCTC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	6 cut(s)	123, 296, 549, 552, 555, 597
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	248, 501
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	9 cut(s)	94, 154, 283, 555, 558, 561, 564, 567, 575
BsuRI	GGCC	2 cut(s)	234, 651
BtsCI	GGATG	2 cut(s)	369, 674
BtsI	GCAGTG	2 cut(s)	327, 583
BtsIMutI	CAGTG	3 cut(s)	327, 421, 583
Cac8I	GCNNGC	1 cut(s)	268
Cfr10I	RCCGGY	2 cut(s)	176, 266
Csp6I	GTAC	2 cut(s)	531, 725
CviAII	CATG	2 cut(s)	218, 573
CviQI	GTAC	2 cut(s)	531, 725
DdeI	CTNAG	1 cut(s)	342
DriI	GACNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	75
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	469
Eco72I	CACGTG	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	674
FaeI	CATG	2 cut(s)	221, 576
FatI	CATG	2 cut(s)	217, 572
FauNDI	CATATG	1 cut(s)	654
FokI	GGATG	2 cut(s)	376, 681
FspBI	CTAG	2 cut(s)	6, 191
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	234, 651
HapII	CCGG	3 cut(s)	177, 249, 267
Hin1II	CATG	2 cut(s)	221, 576
HinfI	GANTC	4 cut(s)	119, 144, 332, 569
HpaII	CCGG	3 cut(s)	177, 249, 267
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	325, 727
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	2 cut(s)	325, 727
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	31, 370, 484, 607
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	8 cut(s)	15, 170, 188, 510, 576, 629, 672, 714
HpyF10VI	GCNNNNNNNGC	6 cut(s)	123, 296, 549, 552, 555, 597
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	2 cut(s)	221, 576
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
LmnI	GCTCC	5 cut(s)	131, 197, 209, 221, 525
Lsp1109I	GCAGC	9 cut(s)	94, 154, 283, 555, 558, 561, 564, 567, 575
LweI	GCATC	1 cut(s)	659
MaeI	CTAG	2 cut(s)	6, 191
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	92, 393
MfeI	CAATTG	1 cut(s)	305
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	6 cut(s)	213, 305, 397, 581, 594, 608
MluNI	TGGCCA	1 cut(s)	651
MlyI	GAGTC	2 cut(s)	153, 341
MnlI	CCTC	5 cut(s)	33, 76, 188, 534, 709
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	1 cut(s)	674
MroNI	GCCGGC	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	3 cut(s)	228, 258, 733
MslI	CAYNNNNRTG	1 cut(s)	73
Msp20I	TGGCCA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	3 cut(s)	177, 249, 267
MspR9I	CCNGG	2 cut(s)	250, 503
MunI	CAATTG	1 cut(s)	305
Mva1269I	GAATGC	3 cut(s)	68, 180, 510
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	6 cut(s)	123, 296, 549, 552, 555, 597
NaeI	GCCGGC	1 cut(s)	268
NciI	CCSGG	1 cut(s)	250
NdeI	CATATG	1 cut(s)	654
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	221, 576
NlaIV	GGNNCC	2 cut(s)	223, 265
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	674
PctI	GAATGC	3 cut(s)	68, 180, 510
PdiI	GCCGGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	119, 569
PleI	GAGTC	2 cut(s)	152, 340
PmaCI	CACGTG	1 cut(s)	664
PmlI	CACGTG	1 cut(s)	664
PpsI	GAGTC	2 cut(s)	152, 340
Ppu21I	YACGTR	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	501
PspCI	CACGTG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	223, 265
RsaI	GTAC	2 cut(s)	532, 726
RsaNI	GTAC	2 cut(s)	531, 725
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	228, 258, 733
SchI	GAGTC	2 cut(s)	153, 341
ScrFI	CCNGG	2 cut(s)	250, 503
SetI	ASST	9 cut(s)	77, 87, 136, 202, 265, 348, 381, 522, 666
SfaNI	GCATC	1 cut(s)	659
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	73
Sse9I	AATT	6 cut(s)	213, 305, 397, 581, 594, 608
SsiI	CCGC	4 cut(s)	66, 126, 129, 276
SspMI	CTAG	2 cut(s)	6, 191
StyD4I	CCNGG	2 cut(s)	248, 501
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	2 cut(s)	142, 526
TasI	AATT	6 cut(s)	213, 305, 397, 581, 594, 608
TatI	WGTACW	2 cut(s)	530, 724
TauI	GCSGC	2 cut(s)	68, 129
TfiI	GAWTC	2 cut(s)	119, 569
Tru1I	TTAA	3 cut(s)	228, 258, 733
Tru9I	TTAA	3 cut(s)	228, 258, 733
TscAI	CASTG	3 cut(s)	327, 428, 583
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	9 cut(s)	107, 167, 296, 543, 546, 549, 552, 555, 588
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	4 cut(s)	50, 206, 393, 561
TspGWI	ACGGA	2 cut(s)	257, 633
TspRI	CASTG	3 cut(s)	327, 428, 583
XapI	RAATTY	2 cut(s)	397, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XspI	CTAG	2 cut(s)	6, 191
Zsp2I	ATGCAT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.