Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8518197.1

Orthogroup ID

OG0011136

Physical Location & Seq

Genomic Coordinates Forward (+)

1472 .. 2919

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8518197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgtctagtttgttcaaggaattgttttcaggcttattggagggtgcgttgagatctaaagaggttgcttctttgtgggttttggctacactagaatttttgggaagtggagctttgattggagtcactaagagagttcttctttctgcatttacctgcattcttgcaataggaggagctatggcgggagcaattcatggagcaatcaaaggccagacgacagaaactgggttttctagtggagccggaataggtggtttggcaggggctattgctgccattcaattgatggatttgatagttgatgggcagccattgtctaaggttgctctcttaggtgggatggtgaatgggaaggtgtttacggagtggatgagctccgcattgctaaaagcctatcattggcaagttagcacgctggagacttacagagagatttctgaactctatgacatcactagagttgggggattatcccaagaatgcattcaaaatctccctcaaagtatgttttgttctagcaatatcattgagtcttccgatgagttttgctgctccatttgcttacaggaattagaggatggagactatacaagagaacttcccatctgtaggcacttgtttcacttggcctgcatagacctatggctaaggcgacaaggttcttgtcctatgtgtagagtccatgtcagtgacgagcaagatcatgaaaggaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

239

Amino Acids

25.91

Weight (kDa)

5.24

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20395
fragaria_vesca	FvH4_3g22710 FvH4_3g22710
malus_domestica	MD03G1200700.v1.1 MD11G1217700.v1.1
prunus_persica	Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1
pyrus_communis	pycom03g15220
rosa_chinensis	RchiOBHm_Chr5g0039601
rosa_laevigata	RLG00000033930
rosa_multiflora	Rmu_co8518197.1_g000001 Rmu_ssc0000400.1_g000013
rosa_roxburghii	Rroxscaffold_1G00041590
rosa_rugosa	Rorug05G0180200
rosa_samantha	Rh5AG267500 Rh5BG271800 Rh5CG304300 Rh5DG279500
rosa_wichuraiana	Rw5G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
AciI	CCGC	2 cut(s)	185, 381
AcsI	RAATTY	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	402, 612
AgsI	TTSAA	3 cut(s)	16, 284, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	3 cut(s)	113, 179, 378
AluI	AGCT	3 cut(s)	113, 179, 378
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	2 cut(s)	416, 579
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	211, 630
ApeKI	GCWGC	3 cut(s)	275, 310, 552
ApoI	RAATTY	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	262, 322, 539
BccI	CCATC	5 cut(s)	283, 299, 337, 575, 614
BcoDI	GTCTC	2 cut(s)	416, 579
BfaI	CTAG	5 cut(s)	6, 92, 237, 459, 519
BfmI	CTRYAG	1 cut(s)	610
BfuAI	ACCTGC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	3 cut(s)	276, 311, 553
BlsI	GCNGC	3 cut(s)	277, 312, 554
BmiI	GGNNCC	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 612
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	383
BseGI	GGATG	3 cut(s)	348, 378, 586
BseLI	CCNNNNNNNGG	2 cut(s)	402, 612
BseMI	GCAATG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	262, 322, 539
BshFI	GGCC	2 cut(s)	213, 632
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	402, 612
BsmAI	GTCTC	2 cut(s)	416, 579
BsmI	GAATGC	3 cut(s)	159, 486, 488
BsnI	GGCC	2 cut(s)	213, 632
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	53, 703
BspACI	CCGC	2 cut(s)	185, 381
BspANI	GGCC	2 cut(s)	213, 632
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	232
BssMI	GATC	2 cut(s)	53, 703
BstC8I	GCNNGC	2 cut(s)	416, 634
BstDEI	CTNAG	4 cut(s)	129, 321, 334, 650
BstF5I	GGATG	3 cut(s)	348, 378, 586
BstKTI	GATC	2 cut(s)	56, 706
BstMAI	GTCTC	2 cut(s)	416, 579
BstMBI	GATC	2 cut(s)	53, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 561
BstSFI	CTRYAG	1 cut(s)	610
BstV1I	GCAGC	3 cut(s)	262, 322, 539
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	213, 632
BtsCI	GGATG	3 cut(s)	348, 378, 586
BtsIMutI	CAGTG	1 cut(s)	697
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	416, 634
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	706
CviAII	CATG	3 cut(s)	197, 686, 707
DdeI	CTNAG	4 cut(s)	129, 321, 334, 650
DpnI	GATC	2 cut(s)	55, 705
DpnII	GATC	2 cut(s)	53, 703
Ecl136II	GAGCTC	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	378
EcoT22I	ATGCAT	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	380
FaeI	CATG	3 cut(s)	200, 689, 710
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FatI	CATG	3 cut(s)	196, 685, 706
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	276, 311, 553
FokI	GGATG	3 cut(s)	355, 385, 593
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	276, 311, 553
FspBI	CTAG	5 cut(s)	6, 92, 237, 459, 519
GluI	GCNGC	3 cut(s)	276, 311, 553
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	213, 632
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	3 cut(s)	200, 689, 710
HinfI	GANTC	3 cut(s)	123, 533, 681
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	2 cut(s)	442, 541
Hpy188III	TCNNGA	1 cut(s)	707
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	349
HpyCH4V	TGCA	5 cut(s)	149, 159, 167, 486, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 561
HpyF3I	CTNAG	4 cut(s)	129, 321, 334, 650
Hsp92II	CATG	3 cut(s)	200, 689, 710
Kzo9I	GATC	2 cut(s)	53, 703
LmnI	GCTCC	7 cut(s)	110, 176, 188, 200, 242, 383, 560
LpnPI	CCDG	9 cut(s)	15, 169, 213, 227, 249, 259, 404, 554, 646
Lsp1109I	GCAGC	3 cut(s)	262, 322, 539
MaeI	CTAG	5 cut(s)	6, 92, 237, 459, 519
MaeIII	GTNAC	2 cut(s)	124, 692
MalI	GATC	2 cut(s)	55, 705
MboI	GATC	2 cut(s)	53, 703
MboII	GAAGA	2 cut(s)	131, 528
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	5 cut(s)	20, 95, 192, 284, 572
MlyI	GAGTC	3 cut(s)	132, 542, 690
MnlI	CCTC	5 cut(s)	34, 55, 167, 510, 571
Mph1103I	ATGCAT	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	486
MslI	CAYNNNNRTG	1 cut(s)	690
MspI	CCGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	284
Mva1269I	GAATGC	3 cut(s)	159, 486, 488
MwoI	GCNNNNNNNGC	2 cut(s)	275, 561
NdeII	GATC	2 cut(s)	53, 703
NlaIII	CATG	3 cut(s)	200, 689, 710
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	124, 692
NsiI	ATGCAT	1 cut(s)	488
PagI	TCATGA	1 cut(s)	706
PctI	GAATGC	3 cut(s)	159, 486, 488
PdmI	GAANNNNTTC	1 cut(s)	486
PkrI	GCNGC	3 cut(s)	277, 312, 554
PleI	GAGTC	3 cut(s)	131, 541, 689
PpsI	GAGTC	3 cut(s)	131, 541, 689
Psp124BI	GAGCTC	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	244
PsrI	GAACNNNNNNTAC	2 cut(s)	499, 531
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	690
SacI	GAGCTC	1 cut(s)	380
SatI	GCNGC	3 cut(s)	276, 311, 553
Sau3AI	GATC	2 cut(s)	53, 703
SchI	GAGTC	3 cut(s)	132, 542, 690
SduI	GDGCHC	1 cut(s)	380
SfcI	CTRYAG	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	690
Sse9I	AATT	5 cut(s)	20, 95, 192, 284, 572
SsiI	CCGC	2 cut(s)	185, 381
SspMI	CTAG	5 cut(s)	6, 92, 237, 459, 519
SstI	GAGCTC	1 cut(s)	380
TasI	AATT	5 cut(s)	20, 95, 192, 284, 572
TscAI	CASTG	1 cut(s)	697
TseFI	GTSAC	2 cut(s)	124, 692
TseI	GCWGC	3 cut(s)	275, 310, 552
Tsp45I	GTSAC	2 cut(s)	124, 692
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	697
XapI	RAATTY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	5 cut(s)	6, 92, 237, 459, 519
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.