Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011136

Physical Location & Seq

Genomic Coordinates Reverse (-)

17235294 .. 17235968

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0180200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTGGTAGACTGTTGGCCTCGAAAGCCAAATTTTCGGGATTCAAAGGAACGATCTCCTCTATTTGGCGTATCAGATCAGGGCTCACTATACACGATGCAGGTGAGAGGTTTGTTTTCCAATTTGAAAGTGAAGCGGTGCGTAATCGCATCTTGCATGGCGGTCCTTGGTTCTACCGCAACACTATGTTAGTGGTAGGAGGGTATGATGGTCTCAGTCTAGTGGAGGAGGTGCCGCTGAATATGATGGAAACTTGGGTTGCGGTGAAGGGCCTCCCTTTTGGCCTGAGAAACAAGAATGCGCTCGAGTTGGTGGGGGCGTCCATAGGGCAAATGGTTCGAGTGGATCAGAATTCCGTGAAGAGGAAGGAAGAGGAACAGAGGATCAAGGTTATGTTCGACGTCCGGCGACATATCCGCACATGGAAGGTGATCGTATTCTCTCCTGTGGTGAAACCAGAGCTTTTCTTGATCTATGAGAAGGTTAAAGGTTTTTGTCGTGATTGTGGGTTGTTCATCCATGATGCCCTAGGTTGTGACAAGCAGTTGATCAAAGAGAAGAGGAGATTCAGGCTATTCCACTGGCGTCTGCCATGGCTGGTTTCTCTATTACCTATGGGTCAGAGGCTTCTCGTTCACTGTCGATGCATGGTCGGGTTTTGGGATGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

224

Amino Acids

26.07

Weight (kDa)

10.02

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	3 - 66	1.9e-09	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20395
fragaria_vesca	FvH4_3g22710 FvH4_3g22710
malus_domestica	MD03G1200700.v1.1 MD11G1217700.v1.1
prunus_persica	Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1
pyrus_communis	pycom03g15220
rosa_chinensis	RchiOBHm_Chr5g0039601
rosa_laevigata	RLG00000033930
rosa_multiflora	Rmu_co8518197.1_g000001 Rmu_ssc0000400.1_g000013
rosa_roxburghii	Rroxscaffold_1G00041590
rosa_rugosa	Rorug05G0180200
rosa_samantha	Rh5AG267500 Rh5BG271800 Rh5CG304300 Rh5DG279500
rosa_wichuraiana	Rw5G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
AatII	GACGTC	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	10
AciI	CCGC	6 cut(s)	137, 162, 178, 236, 263, 418
AclWI	GGATC	2 cut(s)	354, 392
AcsI	RAATTY	2 cut(s)	32, 352
AcyI	GRCGYC	3 cut(s)	320, 402, 586
AfiI	CCNNNNNNNGG	2 cut(s)	66, 363
AgsI	TTSAA	2 cut(s)	46, 128
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	354, 392
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	18, 271, 283
ApoI	RAATTY	2 cut(s)	32, 352
AspA2I	CCTAGG	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	164, 271
AsuHPI	GGTGA	4 cut(s)	116, 277, 442, 463
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	164
AvrII	CCTAGG	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	87
BccI	CCATC	2 cut(s)	203, 241
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BclI	TGATCA	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	2 cut(s)	221, 530
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	236
BlnI	CCTAGG	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	164, 271
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	4 cut(s)	88, 159, 514, 635
BsaHI	GRCGYC	3 cut(s)	320, 402, 586
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	167, 529, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 363
Bse1I	ACTGG	1 cut(s)	587
BseDI	CCNNGG	3 cut(s)	167, 529, 593
BseGI	GGATG	2 cut(s)	516, 670
BseLI	CCNNNNNNNGG	2 cut(s)	66, 363
BseMII	CTCAG	2 cut(s)	229, 278
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	3 cut(s)	49, 242, 577
BshFI	GGCC	3 cut(s)	20, 273, 285
BshNI	GGYRCC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	66, 363
BsmAI	GTCTC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	20, 273, 285
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	7 cut(s)	54, 77, 346, 384, 432, 471, 549
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	6 cut(s)	137, 162, 178, 236, 263, 418
BspANI	GGCC	3 cut(s)	20, 273, 285
BspCNI	CTCAG	2 cut(s)	228, 279
BspLI	GGNNCC	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	354, 392
BspT107I	GGYRCC	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	3 cut(s)	167, 529, 593
BssMI	GATC	7 cut(s)	54, 77, 346, 384, 432, 471, 549
BssNI	GRCGYC	3 cut(s)	320, 402, 586
BssT1I	CCWWGG	3 cut(s)	167, 529, 593
Bst4CI	ACNGT	2 cut(s)	15, 641
Bst6I	CTCTTC	3 cut(s)	356, 366, 554
BstACI	GRCGYC	3 cut(s)	320, 402, 586
BstDEI	CTNAG	2 cut(s)	215, 287
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	2 cut(s)	516, 670
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	7 cut(s)	57, 80, 349, 387, 435, 474, 552
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	7 cut(s)	54, 77, 346, 384, 432, 471, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	20, 273, 285
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	2 cut(s)	516, 670
BtsIMutI	CAGTG	2 cut(s)	580, 637
BveI	ACCTGC	1 cut(s)	92
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	164, 271
CseI	GACGC	2 cut(s)	309, 575
CviAII	CATG	5 cut(s)	158, 423, 521, 594, 649
DdeI	CTNAG	2 cut(s)	215, 287
DpnI	GATC	7 cut(s)	56, 79, 348, 386, 434, 473, 551
DpnII	GATC	7 cut(s)	54, 77, 346, 384, 432, 471, 549
Eam1104I	CTCTTC	3 cut(s)	356, 366, 554
EarI	CTCTTC	3 cut(s)	356, 366, 554
Eco130I	CCWWGG	3 cut(s)	167, 529, 593
Eco24I	GRGCYC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	352
EcoT14I	CCWWGG	3 cut(s)	167, 529, 593
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	3 cut(s)	167, 529, 593
FaeI	CATG	5 cut(s)	161, 426, 524, 597, 652
FatI	CATG	5 cut(s)	157, 422, 520, 593, 648
FbaI	TGATCA	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	2 cut(s)	221, 530
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	20, 273, 285
HapII	CCGG	1 cut(s)	406
HgaI	GACGC	2 cut(s)	309, 575
HhaI	GCGC	1 cut(s)	304
Hin1I	GRCGYC	3 cut(s)	320, 402, 586
Hin1II	CATG	5 cut(s)	161, 426, 524, 597, 652
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	2 cut(s)	42, 567
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	4 cut(s)	116, 277, 442, 463
Hpy166II	GTNNAC	2 cut(s)	11, 637
Hpy188I	TCNGA	3 cut(s)	77, 351, 624
Hpy188III	TCNNGA	3 cut(s)	39, 469, 500
Hpy8I	GTNNAC	2 cut(s)	11, 637
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	4 cut(s)	262, 361, 421, 475
HpyCH4III	ACNGT	2 cut(s)	15, 641
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	101, 157, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	215, 287
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	3 cut(s)	320, 402, 586
Hsp92II	CATG	5 cut(s)	161, 426, 524, 597, 652
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	7 cut(s)	54, 77, 346, 384, 432, 471, 549
LpnPI	CCDG	9 cut(s)	66, 87, 299, 419, 459, 471, 556, 568, 584
LweI	GCATC	4 cut(s)	88, 159, 514, 635
MaeI	CTAG	2 cut(s)	221, 530
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	7 cut(s)	56, 79, 348, 386, 434, 473, 551
MboI	GATC	7 cut(s)	54, 77, 346, 384, 432, 471, 549
MboII	GAAGA	3 cut(s)	373, 383, 571
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	32, 122, 352
Mph1103I	ATGCAT	1 cut(s)	650
MseI	TTAA	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	7 cut(s)	54, 77, 346, 384, 432, 471, 549
NlaIII	CATG	5 cut(s)	161, 426, 524, 597, 652
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	536
NsiI	ATGCAT	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	305
PaqCI	CACCTGC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	42, 567
PkrI	GCNGC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	164, 271
PspXI	VCTCGAGB	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	7 cut(s)	54, 77, 346, 384, 432, 471, 549
Sau96I	GGNCC	2 cut(s)	164, 271
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	4 cut(s)	88, 159, 514, 635
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	32, 122, 352
SsiI	CCGC	6 cut(s)	137, 162, 178, 236, 263, 418
SspMI	CTAG	2 cut(s)	221, 530
StyI	CCWWGG	3 cut(s)	167, 529, 593
TaaI	ACNGT	2 cut(s)	15, 641
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	5 cut(s)	23, 306, 340, 399, 643
TasI	AATT	3 cut(s)	32, 122, 352
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	42, 567
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	2 cut(s)	587, 644
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	1 cut(s)	505
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	2 cut(s)	587, 644
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	32, 352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	305
XmaJI	CCTAGG	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	10
XspI	CTAG	2 cut(s)	221, 530
ZraI	GACGTC	1 cut(s)	403
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.