Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011136

Physical Location & Seq

Genomic Coordinates Forward (+)

16538450 .. 16539513

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15220.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCTAGTTTTTGCACTTCTCCTCCTATGATGATGAAGGGGTGGTTTTCAGGCTTATTGAGAGCCGCATTCAGGTGTGAAGAGGTTGTTTCTTTGTGGGTTTTGGCTGCCATCGGTGATTCCAGCGGCGGAGCTTTGGGTCGAGTCACAAAACGAGTTGTTTTTGCTGCATATACCTGCATTCTTGCACTAGGAGGAGCTATAGTGGGAGCCATTCATGGAGCCATTAAAGGCCAGACGACGGAGACCGGGTTTCTTAAAGGTGCCGGCATAGGCGGTTTGGCAGGGGCTATTGCTGCCATTCAATTGATGGATTTGGCAGTGGACGGCGAGTCGTTGTCTAAGGTTGCTTTCTTGGGAGGGATCGTAAATGGGAAGGTGTTTATGGAATGGGTGAATTCTTCATTGCTAAAAGCCTATCACTGGCAAGGTTACAATGCCAAACTTACTGAGCAGGTTAGCAATCTGGAAACAACTTACAGAGAGATTTCTGAAATCTATGACATTGCTGGAGTGAAGGGATTATCCCAGGATTGCATTCAAAAGCTCCCTCAAAGCACACTTTACAGCAGCAGCAGCAATATCATTGATTCATGCAGTGAATTTTGCTGCTCAATTTGCTTACAGGTGGGTTCCAAACATATCCTAATTGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

220

Amino Acids

23.13

Weight (kDa)

6.8

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20395
fragaria_vesca	FvH4_3g22710 FvH4_3g22710
malus_domestica	MD03G1200700.v1.1 MD11G1217700.v1.1
prunus_persica	Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1
pyrus_communis	pycom03g15220
rosa_chinensis	RchiOBHm_Chr5g0039601
rosa_laevigata	RLG00000033930
rosa_multiflora	Rmu_co8518197.1_g000001 Rmu_ssc0000400.1_g000013
rosa_roxburghii	Rroxscaffold_1G00041590
rosa_rugosa	Rorug05G0180200
rosa_samantha	Rh5AG267500 Rh5BG271800 Rh5CG304300 Rh5DG279500
rosa_wichuraiana	Rw5G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	185, 445
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	4 cut(s)	66, 126, 129, 276
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	397, 602
AfiI	CCNNNNNNNGG	3 cut(s)	72, 241, 423
AgsI	TTSAA	2 cut(s)	305, 542
AhdI	GACNNNNNGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	3 cut(s)	134, 200, 547
AluI	AGCT	3 cut(s)	134, 200, 547
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	7 cut(s)	107, 167, 296, 570, 573, 576, 609
ApoI	RAATTY	2 cut(s)	397, 602
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	128, 406
BanI	GGYRCC	1 cut(s)	263
BbvI	GCAGC	7 cut(s)	94, 154, 283, 582, 585, 588, 596
BccI	CCATC	2 cut(s)	119, 304
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	530
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	6, 191
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	2 cut(s)	185, 445
BisI	GCNGC	9 cut(s)	66, 108, 127, 168, 297, 571, 574, 577, 610
BlsI	GCNGC	9 cut(s)	67, 109, 128, 169, 298, 572, 575, 578, 611
Bme1390I	CCNGG	2 cut(s)	250, 530
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmiI	GGNNCC	4 cut(s)	211, 223, 265, 634
BmrFI	CCNGG	2 cut(s)	250, 530
BpmI	CTGGAG	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	528
BsaXI	ACNNNNNCTCC	8 cut(s)	7, 37, 189, 219, 236, 266, 351, 381
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 241, 423
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	2 cut(s)	404, 504
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	72, 241, 423
BseMI	GCAATG	2 cut(s)	404, 504
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	2 cut(s)	12, 210
BseXI	GCAGC	7 cut(s)	94, 154, 283, 582, 585, 588, 596
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	249, 267
BslI	CCNNNNNNNGG	3 cut(s)	72, 241, 423
BsmAI	GTCTC	1 cut(s)	239
BsmI	GAATGC	3 cut(s)	68, 180, 537
BsnI	GGCC	1 cut(s)	234
Bso31I	GGTCTC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	363
BspACI	CCGC	4 cut(s)	66, 126, 129, 276
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	4 cut(s)	211, 223, 265, 634
BspMI	ACCTGC	2 cut(s)	185, 445
BspPI	GGATC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	404, 504
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	530
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	342, 450
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 576, 618
BstNI	CCWGG	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	248, 528
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	7 cut(s)	94, 154, 283, 582, 585, 588, 596
BsuRI	GGCC	1 cut(s)	234
BtsI	GCAGTG	2 cut(s)	327, 604
BtsIMutI	CAGTG	3 cut(s)	327, 421, 604
BveI	ACCTGC	2 cut(s)	185, 445
Cac8I	GCNNGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	266
CviAII	CATG	2 cut(s)	218, 594
DdeI	CTNAG	2 cut(s)	342, 450
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
DriI	GACNNNNNGTC	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	75
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	528
FaeI	CATG	2 cut(s)	221, 597
FatI	CATG	2 cut(s)	217, 593
Fnu4HI	GCNGC	9 cut(s)	66, 108, 127, 168, 297, 571, 574, 577, 610
Fsp4HI	GCNGC	9 cut(s)	66, 108, 127, 168, 297, 571, 574, 577, 610
FspBI	CTAG	2 cut(s)	6, 191
GluI	GCNGC	9 cut(s)	66, 108, 127, 168, 297, 571, 574, 577, 610
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	2 cut(s)	249, 267
Hin1II	CATG	2 cut(s)	221, 597
HinfI	GANTC	4 cut(s)	119, 144, 332, 590
HpaII	CCGG	2 cut(s)	249, 267
HphI	GGTGA	2 cut(s)	128, 406
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	31, 370, 511
HpyCH4V	TGCA	7 cut(s)	15, 170, 180, 188, 537, 597, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 576, 618
HpyF3I	CTNAG	2 cut(s)	342, 450
Hsp92II	CATG	2 cut(s)	221, 597
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	363
LmnI	GCTCC	5 cut(s)	131, 197, 209, 221, 552
Lsp1109I	GCAGC	7 cut(s)	94, 154, 283, 582, 585, 588, 596
MaeI	CTAG	2 cut(s)	6, 191
MaeIII	GTNAC	2 cut(s)	145, 431
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	2 cut(s)	92, 393
MfeI	CAATTG	1 cut(s)	305
MluCI	AATT	5 cut(s)	305, 397, 602, 615, 648
MlyI	GAGTC	2 cut(s)	153, 341
MnlI	CCTC	5 cut(s)	33, 76, 188, 353, 561
MroNI	GCCGGC	1 cut(s)	266
MseI	TTAA	2 cut(s)	228, 258
MslI	CAYNNNNRTG	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	2 cut(s)	249, 267
MspR9I	CCNGG	2 cut(s)	250, 530
MunI	CAATTG	1 cut(s)	305
Mva1269I	GAATGC	3 cut(s)	68, 180, 537
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	3 cut(s)	296, 576, 618
NaeI	GCCGGC	1 cut(s)	268
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	1 cut(s)	363
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	221, 597
NlaIV	GGNNCC	4 cut(s)	211, 223, 265, 634
NmuCI	GTSAC	1 cut(s)	145
PctI	GAATGC	3 cut(s)	68, 180, 537
PdiI	GCCGGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	119, 590
PkrI	GCNGC	9 cut(s)	67, 109, 128, 169, 298, 572, 575, 578, 611
PleI	GAGTC	2 cut(s)	152, 340
PpsI	GAGTC	2 cut(s)	152, 340
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	4 cut(s)	211, 223, 265, 634
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	228, 258
SatI	GCNGC	9 cut(s)	66, 108, 127, 168, 297, 571, 574, 577, 610
Sau3AI	GATC	1 cut(s)	363
SchI	GAGTC	2 cut(s)	153, 341
ScrFI	CCNGG	2 cut(s)	250, 530
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	73
Sse9I	AATT	5 cut(s)	305, 397, 602, 615, 648
SsiI	CCGC	4 cut(s)	66, 126, 129, 276
SspMI	CTAG	2 cut(s)	6, 191
StyD4I	CCNGG	2 cut(s)	248, 528
TaqI	TCGA	1 cut(s)	142
TasI	AATT	5 cut(s)	305, 397, 602, 615, 648
TauI	GCSGC	2 cut(s)	68, 129
TfiI	GAWTC	2 cut(s)	119, 590
Tru1I	TTAA	2 cut(s)	228, 258
Tru9I	TTAA	2 cut(s)	228, 258
TscAI	CASTG	3 cut(s)	327, 428, 604
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	7 cut(s)	107, 167, 296, 570, 573, 576, 609
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	4 cut(s)	50, 206, 393, 582
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	327, 428, 604
XapI	RAATTY	2 cut(s)	397, 602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XspI	CTAG	2 cut(s)	6, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.