Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011136

Physical Location & Seq

Genomic Coordinates Reverse (-)

13338462 .. 13341230

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G213600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTCTGGCTTGCCCATTTCTTCTGTGATGAAGGGATGGTTTTCAGGCTTGTTGAAAGCCACATTCAGGTCTAAAGAGATTGTTTCTTTGTGGGTTTTGGCTGCAATTGGCGATGGTTCAAGAGGTGGGGCTTTGATAGGTGTTATAAACAGAGTTGTTTTTACTGTATTTACCTGCATTCTTGCACTAGTTGTGGGTTTTGTAGGAGGGGCTATAATGGGAGCAATTCATGGAGCCGTCACAGGCCAGACGACGGAGACCGGGTTGGTTACTGGAGCAGGAATAGGTTGTCTGGCAGGGGCAATTGCAGCCATTCAGTTGATGGATTTGGGAGTTGATGGCCAATCATTGTCTAAGGTTGCTCTCTTGGGGGGTATGGTAAATGGGAAGGTGTTTATGGAATGGGTAAGTTCTGCAGTGCTAAAAGCCTATCACTGGCAAGTTAGCAATCTGGAAACAACTTATAGAGATATTTCTGAAATTTATGACATTGCTGGAGCTAAGGGCTTATCCCATGAATGCATTCAAAGGCTCCCTCAAAGTACCTTTCGTTCTAGCAATATGGTTGAATCTTGCAACGACTTTTGCTGCTCAATTTGCTTGCAGGAACTGAAGGAGGGAGAGTGTGCAAGAGAACTTCCCACCTGTAGGCATTTCTTTCACGTGGCCTGCATAGACCAATGGCTAAAGCAACAATCTTCTTGCCCTATGTGCAGAACACGTGTCCATACTGAAAACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

248

Amino Acids

26.46

Weight (kDa)

6.97

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20395
fragaria_vesca	FvH4_3g22710 FvH4_3g22710
malus_domestica	MD03G1200700.v1.1 MD11G1217700.v1.1
prunus_persica	Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1
pyrus_communis	pycom03g15220
rosa_chinensis	RchiOBHm_Chr5g0039601
rosa_laevigata	RLG00000033930
rosa_multiflora	Rmu_co8518197.1_g000001 Rmu_ssc0000400.1_g000013
rosa_roxburghii	Rroxscaffold_1G00041590
rosa_rugosa	Rorug05G0180200
rosa_samantha	Rh5AG267500 Rh5BG271800 Rh5CG304300 Rh5DG279500
rosa_wichuraiana	Rw5G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	182
AclI	AACGTT	1 cut(s)	738
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	632
AcvI	CACGTG	2 cut(s)	664, 722
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	4 cut(s)	66, 253, 435, 648
AflIII	ACRYGT	2 cut(s)	719, 721
AgsI	TTSAA	4 cut(s)	55, 120, 527, 569
AhlI	ACTAGT	1 cut(s)	187
AluBI	AGCT	1 cut(s)	500
AluI	AGCT	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	610
AoxI	GGCC	3 cut(s)	244, 340, 666
ApeKI	GCWGC	3 cut(s)	101, 308, 588
ApoI	RAATTY	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	522
AsuC2I	CCSGG	1 cut(s)	262
BalI	TGGCCA	1 cut(s)	342
BbrPI	CACGTG	2 cut(s)	664, 722
BbvI	GCAGC	3 cut(s)	88, 320, 575
BccI	CCATC	4 cut(s)	30, 107, 316, 332
BceAI	ACGGC	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	2 cut(s)	188, 555
BfmI	CTRYAG	2 cut(s)	414, 646
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	3 cut(s)	102, 309, 589
BlsI	GCNGC	3 cut(s)	103, 310, 590
Bme1390I	CCNGG	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	235, 533
BmrFI	CCNGG	1 cut(s)	262
BpmI	CTGGAG	2 cut(s)	294, 516
Bpu10I	CCTNAGC	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	262
BsaAI	YACGTR	2 cut(s)	664, 722
BsaI	GGTCTC	1 cut(s)	251
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 608, 638
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 253, 435, 648
Bse1I	ACTGG	2 cut(s)	277, 440
Bse3DI	GCAATG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	4 cut(s)	66, 253, 435, 648
BseMI	GCAATG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	277, 440
BseXI	GCAGC	3 cut(s)	88, 320, 575
BsgI	GTGCAG	1 cut(s)	733
BshFI	GGCC	3 cut(s)	246, 342, 668
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	4 cut(s)	66, 253, 435, 648
BsmAI	GTCTC	1 cut(s)	251
BsmI	GAATGC	3 cut(s)	177, 522, 524
BsnI	GGCC	3 cut(s)	246, 342, 668
Bso31I	GGTCTC	1 cut(s)	251
BspANI	GGCC	3 cut(s)	246, 342, 668
BspLI	GGNNCC	2 cut(s)	235, 533
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	277, 440
Bst4CI	ACNGT	1 cut(s)	166
BstBAI	YACGTR	2 cut(s)	664, 722
BstC8I	GCNNGC	3 cut(s)	11, 602, 670
BstDEI	CTNAG	2 cut(s)	354, 501
BstF5I	GGATG	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 597, 711
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	2 cut(s)	414, 646
BstV1I	GCAGC	3 cut(s)	88, 320, 575
BsuRI	GGCC	3 cut(s)	246, 342, 668
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	423, 433
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	3 cut(s)	11, 602, 670
CaiI	CAGNNNCTG	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	2 cut(s)	230, 515
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	2 cut(s)	354, 501
EaeI	YGGCCR	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	632
Eco72I	CACGTG	2 cut(s)	664, 722
EcoT22I	ATGCAT	1 cut(s)	524
FaeI	CATG	2 cut(s)	233, 518
FatI	CATG	2 cut(s)	229, 514
Fnu4HI	GCNGC	3 cut(s)	102, 309, 589
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	102, 309, 589
FspBI	CTAG	2 cut(s)	188, 555
GluI	GCNGC	3 cut(s)	102, 309, 589
GsuI	CTGGAG	2 cut(s)	294, 516
HaeIII	GGCC	3 cut(s)	246, 342, 668
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	2 cut(s)	233, 518
HinfI	GANTC	1 cut(s)	569
HpaII	CCGG	1 cut(s)	261
Hpy188I	TCNGA	1 cut(s)	478
Hpy188III	TCNNGA	2 cut(s)	120, 452
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	3 cut(s)	25, 382, 607
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	3 cut(s)	663, 721, 738
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 597, 711
HpyF3I	CTNAG	2 cut(s)	354, 501
HpySE526I	ACGT	3 cut(s)	663, 721, 738
Hsp92II	CATG	2 cut(s)	233, 518
LmnI	GCTCC	5 cut(s)	221, 233, 275, 497, 537
Lsp1109I	GCAGC	3 cut(s)	88, 320, 575
MaeI	CTAG	2 cut(s)	188, 555
MaeII	ACGT	3 cut(s)	663, 721, 738
MaeIII	GTNAC	2 cut(s)	238, 268
MboII	GAAGA	2 cut(s)	12, 690
MfeI	CAATTG	2 cut(s)	105, 303
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	5 cut(s)	105, 225, 303, 480, 594
MluNI	TGGCCA	1 cut(s)	342
MnlI	CCTC	4 cut(s)	116, 200, 546, 610
Mox20I	TGGCCA	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	1 cut(s)	742
Msp20I	TGGCCA	1 cut(s)	342
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	262
MunI	CAATTG	2 cut(s)	105, 303
Mva1269I	GAATGC	3 cut(s)	177, 522, 524
MwoI	GCNNNNNNNGC	3 cut(s)	308, 597, 711
NciI	CCSGG	1 cut(s)	262
NlaIII	CATG	2 cut(s)	233, 518
NlaIV	GGNNCC	2 cut(s)	235, 533
NmuCI	GTSAC	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	524
PctI	GAATGC	3 cut(s)	177, 522, 524
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	3 cut(s)	103, 310, 590
PmaCI	CACGTG	2 cut(s)	664, 722
PmlI	CACGTG	2 cut(s)	664, 722
Ppu21I	YACGTR	2 cut(s)	664, 722
PsiI	TTATAA	1 cut(s)	146
Psp1406I	AACGTT	1 cut(s)	738
PspCI	CACGTG	2 cut(s)	664, 722
PspN4I	GGNNCC	2 cut(s)	235, 533
PsrI	GAACNNNNNNTAC	2 cut(s)	535, 567
PstI	CTGCAG	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	610
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	742
SatI	GCNGC	3 cut(s)	102, 309, 589
ScrFI	CCNGG	1 cut(s)	262
SfcI	CTRYAG	2 cut(s)	414, 646
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	5 cut(s)	105, 225, 303, 480, 594
SspMI	CTAG	2 cut(s)	188, 555
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	3 cut(s)	666, 724, 741
TasI	AATT	5 cut(s)	105, 225, 303, 480, 594
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	1 cut(s)	742
Tru9I	TTAA	1 cut(s)	742
TscAI	CASTG	2 cut(s)	423, 440
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	3 cut(s)	101, 308, 588
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	44, 218, 531
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	2 cut(s)	423, 440
XapI	RAATTY	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	2 cut(s)	188, 555
Zsp2I	ATGCAT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.