Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011136

Physical Location & Seq

Genomic Coordinates Forward (+)

31778621 .. 31780532

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1217700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTCTAGTTTTTCCATTCCTCATATGATGATGGAGGAAATGTTTTCAGGCTTATTGAGAGCCACATTCAGGTCTAAAGAGGTTGTTTCTTTGTGGGTTTTGGCTGCAATTGGTGATTCCAGCGGCGGAGCTGTGATTCAAGTCACAAAACGAGTTGTTTTTGCTGCATTTACCTGCTTTCTTGCACTAGGAGGAGCTGTAGTGGGAGCAATTCATGGAGCGATCAAAGGCCAGACAACGGAGACGGGGTTTCTTAATGGTGCCGGCATAGGCGGTTTGACAGGGGCTATTGCTGCCATTCAATTGATGGATTTGGCAGTGGACGGCGAGTTGTTGTCTAAGGTTGCTTTCTTGGTAGGTATGGTAAATGGGAAGGTGTTTATGGAATGGGTGAGTTCTGCATTGCTAAAAGCCTATCACTGGCAAGTTAGCAATCTGGAAACAGCTTACAGAGAGATTTCTGAAATCTATGACATTGGTGGAATGAAGGGGTTATCGCACGATTGCATCCAAAAGCTCCCTCAAAGTACATTTCACAGCAGCAGGAGCAGCAATATCATCGAGTCTTGCAGTGAATTTTGCTGCTCAATTTGCTTACAGGAATTTAAGGATGGAGAGAATGCAAGAGAACTTCCCATTTGTGGGCATTTGTTTCACATGGCCTGCATAGACCAATGGCTAAAGCGACAAGCCTCTTGTCCTATGTGCAGACTACATGTCCGCATTGAAAACGTAGTAGATTTTAGGGATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

252

Amino Acids

27.34

Weight (kDa)

6.05

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	194 - 237	3.8e-14	Ring finger domain
zf-RING_11	PF17123	195 - 223	3.8e-10	RING-like zinc finger
zf-rbx1	PF12678	195 - 237	4e-09	RING-H2 zinc finger domain
zf-RING_UBOX	PF13445	195 - 234	1.7e-08	RING-type zinc-finger
zf-C3HC4	PF00097	195 - 236	1.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	195 - 236	3.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20395
fragaria_vesca	FvH4_3g22710 FvH4_3g22710
malus_domestica	MD03G1200700.v1.1 MD11G1217700.v1.1
prunus_persica	Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1
pyrus_communis	pycom03g15220
rosa_chinensis	RchiOBHm_Chr5g0039601
rosa_laevigata	RLG00000033930
rosa_multiflora	Rmu_co8518197.1_g000001 Rmu_ssc0000400.1_g000013
rosa_roxburghii	Rroxscaffold_1G00041590
rosa_rugosa	Rorug05G0180200
rosa_samantha	Rh5AG267500 Rh5BG271800 Rh5CG304300 Rh5DG279500
rosa_wichuraiana	Rw5G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	4 cut(s)	123, 126, 273, 721
AcsI	RAATTY	2 cut(s)	575, 602
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	5 cut(s)	69, 238, 420, 641, 642
AflIII	ACRYGT	1 cut(s)	715
AgsI	TTSAA	3 cut(s)	140, 302, 728
AhdI	GACNNNNNGTC	1 cut(s)	716
AluBI	AGCT	4 cut(s)	131, 197, 446, 517
AluI	AGCT	4 cut(s)	131, 197, 446, 517
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	2 cut(s)	229, 660
ApeKI	GCWGC	6 cut(s)	104, 164, 293, 540, 549, 582
ApoI	RAATTY	2 cut(s)	575, 602
AsuHPI	GGTGA	2 cut(s)	125, 403
BanI	GGYRCC	1 cut(s)	260
BbvI	GCAGC	6 cut(s)	91, 151, 280, 552, 561, 569
BccI	CCATC	3 cut(s)	25, 301, 605
BceAI	ACGGC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	3 cut(s)	6, 188, 754
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	7 cut(s)	105, 124, 165, 294, 541, 550, 583
BlsI	GCNGC	7 cut(s)	106, 125, 166, 295, 542, 551, 584
BmeRI	GACNNNNNGTC	1 cut(s)	716
BmiI	GGNNCC	1 cut(s)	262
BmsI	GCATC	1 cut(s)	516
BsaXI	ACNNNNNCTCC	8 cut(s)	26, 56, 183, 186, 213, 216, 233, 263
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 238, 420, 641, 642
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	507, 616
BseLI	CCNNNNNNNGG	5 cut(s)	69, 238, 420, 641, 642
BseMI	GCAATG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	6 cut(s)	91, 151, 280, 552, 561, 569
BsgI	GTGCAG	1 cut(s)	727
BshFI	GGCC	2 cut(s)	231, 662
BshNI	GGYRCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	5 cut(s)	69, 238, 420, 641, 642
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	231, 662
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	4 cut(s)	123, 126, 273, 721
BspANI	GGCC	2 cut(s)	231, 662
BspLI	GGNNCC	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	263
BssMI	GATC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	265, 664
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	507, 616
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 546, 549, 591
BstNSI	RCATGY	1 cut(s)	719
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	6 cut(s)	91, 151, 280, 552, 561, 569
BsuRI	GGCC	2 cut(s)	231, 662
BtsCI	GGATG	2 cut(s)	507, 616
BtsI	GCAGTG	2 cut(s)	324, 577
BtsIMutI	CAGTG	3 cut(s)	324, 418, 577
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	265, 664
Cfr10I	RCCGGY	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	3 cut(s)	215, 658, 716
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DriI	GACNNNNNGTC	1 cut(s)	716
Eam1105I	GACNNNNNGTC	1 cut(s)	716
EciI	GGCGGA	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	218, 661, 719
FatI	CATG	3 cut(s)	214, 657, 715
FauNDI	CATATG	1 cut(s)	24
Fnu4HI	GCNGC	7 cut(s)	105, 124, 165, 294, 541, 550, 583
FokI	GGATG	2 cut(s)	494, 623
Fsp4HI	GCNGC	7 cut(s)	105, 124, 165, 294, 541, 550, 583
FspBI	CTAG	3 cut(s)	6, 188, 754
GluI	GCNGC	7 cut(s)	105, 124, 165, 294, 541, 550, 583
HaeIII	GGCC	2 cut(s)	231, 662
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	3 cut(s)	218, 661, 719
HinfI	GANTC	3 cut(s)	116, 136, 563
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	125, 403
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	367, 481
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	9 cut(s)	107, 167, 185, 401, 507, 570, 623, 666, 708
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 546, 549, 591
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	3 cut(s)	218, 661, 719
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	6 cut(s)	128, 194, 206, 218, 522, 546
Lsp1109I	GCAGC	6 cut(s)	91, 151, 280, 552, 561, 569
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	3 cut(s)	6, 188, 754
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MfeI	CAATTG	2 cut(s)	108, 302
MluCI	AATT	6 cut(s)	108, 210, 302, 575, 588, 602
MlyI	GAGTC	1 cut(s)	572
MnlI	CCTC	6 cut(s)	28, 30, 73, 185, 531, 703
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	2 cut(s)	255, 606
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	1 cut(s)	264
MunI	CAATTG	2 cut(s)	108, 302
Mva1269I	GAATGC	1 cut(s)	625
MwoI	GCNNNNNNNGC	4 cut(s)	293, 546, 549, 591
NaeI	GCCGGC	1 cut(s)	265
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	1 cut(s)	222
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	3 cut(s)	218, 661, 719
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	719
PciI	ACATGT	1 cut(s)	715
PctI	GAATGC	1 cut(s)	625
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	116, 136
PkrI	GCNGC	7 cut(s)	106, 125, 166, 295, 542, 551, 584
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PscI	ACATGT	1 cut(s)	715
PspN4I	GGNNCC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	255, 606
SatI	GCNGC	7 cut(s)	105, 124, 165, 294, 541, 550, 583
Sau3AI	GATC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	572
SfaNI	GCATC	1 cut(s)	516
SfcI	CTRYAG	1 cut(s)	198
Sse9I	AATT	6 cut(s)	108, 210, 302, 575, 588, 602
SsiI	CCGC	4 cut(s)	123, 126, 273, 721
SspMI	CTAG	3 cut(s)	6, 188, 754
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	1 cut(s)	561
TasI	AATT	6 cut(s)	108, 210, 302, 575, 588, 602
TatI	WGTACW	1 cut(s)	527
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	116, 136
Tru1I	TTAA	2 cut(s)	255, 606
Tru9I	TTAA	2 cut(s)	255, 606
TscAI	CASTG	3 cut(s)	324, 425, 577
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	6 cut(s)	104, 164, 293, 540, 549, 582
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	203, 500
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	3 cut(s)	324, 425, 577
XapI	RAATTY	2 cut(s)	575, 602
XceI	RCATGY	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XspI	CTAG	3 cut(s)	6, 188, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.