Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011136

Physical Location & Seq

Genomic Coordinates Reverse (-)

34320408 .. 34322195

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31817

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCTAGTTTGTTCAAGGAATTGTTTTCAGGCTTATTGGAGGGTGCGTTGAGATCTAAAGAGGTTGCTTCTTTGTGGGTTTTGGCTACACTAGAAGGTTTGGGAATTGGAGCTTTGATTGGAGTCACTAAGAGAGTTCTTCTTTCTGCATTTACCTGCATTCTTGCAATAGGAGGAGCTATAGCGGGAGCAATTCATGGCGCCATCAAAGGCCAGACGACAGAAACTGGGTTTTCTATTGGAGCCGGAATAGGTGGTTTGGCAGGGGCTATTGCTGCCATTCAATTGATGGATTTGATAGTTGATGGGCAGCCATTGTCTAAGGTTGCTCTCTTAGGTGGGATGGTGAATGGGAAGGTGTTTACGGAGTGGATGAGCTCCGCATTGCTAAAAGCCTATCATTGGCAAGTTAGCACGCTGGAGACTTACAGAGAGATTTCTGAACTCTATGACATCACTAGAGTTAAGGGATTATCCCAAGATTGCATTCAAAATCTCCCTCAAAGTATGTTTTGTTCTAGCAATATCATTGAGTCTTCCGATGAGTTTTGCTGCTCCATTTGCTTACAGGAATTAGAGGATGGAGACTATACAAGAGAACTTCCCATCTGTAGGCACTTGTTTCACTTGGCCTGCATAGACCTATGGCTAAGGCGACAAGGCTCTTGTCCTATGTGTAGAGTCCATGTCAGTGACGGGCAAGATCATGAAAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

239

Amino Acids

25.84

Weight (kDa)

5.51

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	183 - 227	3.8e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	184 - 227	9e-13	Ring finger domain
zf-RING_11	PF17123	185 - 213	9.1e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	185 - 226	8.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	185 - 226	9e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20395
fragaria_vesca	FvH4_3g22710 FvH4_3g22710
malus_domestica	MD03G1200700.v1.1 MD11G1217700.v1.1
prunus_persica	Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1 Prupe.4G213600_v2.0.a1
pyrus_communis	pycom03g15220
rosa_chinensis	RchiOBHm_Chr5g0039601
rosa_laevigata	RLG00000033930
rosa_multiflora	Rmu_co8518197.1_g000001 Rmu_ssc0000400.1_g000013
rosa_roxburghii	Rroxscaffold_1G00041590
rosa_rugosa	Rorug05G0180200
rosa_samantha	Rh5AG267500 Rh5BG271800 Rh5CG304300 Rh5DG279500
rosa_wichuraiana	Rw5G025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	2 cut(s)	185, 381
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	402, 612
AgsI	TTSAA	3 cut(s)	16, 284, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	3 cut(s)	113, 179, 378
AluI	AGCT	3 cut(s)	113, 179, 378
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	2 cut(s)	416, 579
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	211, 630
ApeKI	GCWGC	3 cut(s)	275, 310, 552
AspLEI	GCGC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	262, 322, 539
BccI	CCATC	6 cut(s)	212, 283, 299, 337, 575, 614
BcoDI	GTCTC	2 cut(s)	416, 579
BfaI	CTAG	4 cut(s)	6, 92, 459, 519
BfmI	CTRYAG	2 cut(s)	180, 610
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	3 cut(s)	276, 311, 553
BlsI	GCNGC	3 cut(s)	277, 312, 554
BmiI	GGNNCC	2 cut(s)	202, 244
BmrI	ACTGGG	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	650
BsaHI	GRCGYC	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 612
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	383
BseGI	GGATG	3 cut(s)	348, 378, 586
BseLI	CCNNNNNNNGG	2 cut(s)	402, 612
BseMI	GCAATG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	262, 322, 539
BshFI	GGCC	2 cut(s)	213, 632
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	402, 612
BsmAI	GTCTC	2 cut(s)	416, 579
BsmI	GAATGC	2 cut(s)	159, 486
BsnI	GGCC	2 cut(s)	213, 632
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	53, 703
BspACI	CCGC	2 cut(s)	185, 381
BspANI	GGCC	2 cut(s)	213, 632
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	202, 244
BspMI	ACCTGC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	232
BssMI	GATC	2 cut(s)	53, 703
BssNI	GRCGYC	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	416, 634
BstDEI	CTNAG	4 cut(s)	129, 321, 334, 650
BstF5I	GGATG	3 cut(s)	348, 378, 586
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	56, 706
BstMAI	GTCTC	2 cut(s)	416, 579
BstMBI	GATC	2 cut(s)	53, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 561
BstSFI	CTRYAG	2 cut(s)	180, 610
BstV1I	GCAGC	3 cut(s)	262, 322, 539
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	213, 632
BtsCI	GGATG	3 cut(s)	348, 378, 586
BtsIMutI	CAGTG	1 cut(s)	697
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	416, 634
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	203
CviAII	CATG	3 cut(s)	197, 686, 707
DdeI	CTNAG	4 cut(s)	129, 321, 334, 650
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	2 cut(s)	55, 705
DpnII	GATC	2 cut(s)	53, 703
Ecl136II	GAGCTC	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	380
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
FaeI	CATG	3 cut(s)	200, 689, 710
FatI	CATG	3 cut(s)	196, 685, 706
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	276, 311, 553
FokI	GGATG	3 cut(s)	355, 385, 593
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	276, 311, 553
FspBI	CTAG	4 cut(s)	6, 92, 459, 519
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	3 cut(s)	276, 311, 553
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	213, 632
HapII	CCGG	1 cut(s)	246
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	200, 689, 710
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	3 cut(s)	123, 533, 681
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	2 cut(s)	442, 541
Hpy188III	TCNNGA	1 cut(s)	707
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	2 cut(s)	89, 349
HpyCH4V	TGCA	5 cut(s)	149, 159, 167, 486, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 561
HpyF3I	CTNAG	4 cut(s)	129, 321, 334, 650
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	200, 689, 710
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	53, 703
LmnI	GCTCC	6 cut(s)	110, 176, 188, 242, 383, 560
LpnPI	CCDG	9 cut(s)	15, 169, 213, 227, 249, 259, 404, 554, 646
Lsp1109I	GCAGC	3 cut(s)	262, 322, 539
MaeI	CTAG	4 cut(s)	6, 92, 459, 519
MaeIII	GTNAC	2 cut(s)	124, 692
MalI	GATC	2 cut(s)	55, 705
MboI	GATC	2 cut(s)	53, 703
MboII	GAAGA	2 cut(s)	131, 528
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	5 cut(s)	20, 105, 192, 284, 572
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	3 cut(s)	132, 542, 690
MnlI	CCTC	5 cut(s)	34, 55, 167, 510, 571
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	690
MspI	CCGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	284
Mva1269I	GAATGC	2 cut(s)	159, 486
MwoI	GCNNNNNNNGC	2 cut(s)	275, 561
NarI	GGCGCC	1 cut(s)	201
NdeII	GATC	2 cut(s)	53, 703
NlaIII	CATG	3 cut(s)	200, 689, 710
NlaIV	GGNNCC	2 cut(s)	202, 244
NmuCI	GTSAC	2 cut(s)	124, 692
PagI	TCATGA	1 cut(s)	706
PctI	GAATGC	2 cut(s)	159, 486
PkrI	GCNGC	3 cut(s)	277, 312, 554
PleI	GAGTC	3 cut(s)	131, 541, 689
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	3 cut(s)	131, 541, 689
Psp124BI	GAGCTC	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	202, 244
PsrI	GAACNNNNNNTAC	2 cut(s)	499, 531
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	690
SacI	GAGCTC	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	3 cut(s)	276, 311, 553
Sau3AI	GATC	2 cut(s)	53, 703
SchI	GAGTC	3 cut(s)	132, 542, 690
SduI	GDGCHC	1 cut(s)	380
SfcI	CTRYAG	2 cut(s)	180, 610
SfoI	GGCGCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	690
Sse9I	AATT	5 cut(s)	20, 105, 192, 284, 572
SsiI	CCGC	2 cut(s)	185, 381
SspDI	GGCGCC	1 cut(s)	200
SspMI	CTAG	4 cut(s)	6, 92, 459, 519
SstI	GAGCTC	1 cut(s)	380
TasI	AATT	5 cut(s)	20, 105, 192, 284, 572
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	697
TseFI	GTSAC	2 cut(s)	124, 692
TseI	GCWGC	3 cut(s)	275, 310, 552
Tsp45I	GTSAC	2 cut(s)	124, 692
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	4 cut(s)	6, 92, 459, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.