Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002530

Physical Location & Seq

Genomic Coordinates Reverse (-)

16127179 .. 16137973

Gene Structure 10795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23000.t12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGGTGGAGGAAATGGACGAAACCGAAGCTCTGCCTCAGGTGTACATGGCATGTATTCGACAAGGTCACCGAGTGGGAGTTTCTTATTATGATTCCAGTATTCGCCAACTTCACGTGATGGAACTCTGGGAAGATGGTAGCATGGACTTCCCACTAATTGATATGGTGAAATATCAAGCTAAGCCACTGATCATCTACACAAGCACAAAAAGCGAGGAAGCTTTCTTGTCTGCTTTACAACGAAGTGATGGAATAACAGAGGCTTTTGCTGTGAAGCTTGTGAAAAGTTCAGTATTTAGCTATGAGCAAGCATGGCACAGATTAATGTACCTTCGAGTAACAGGAATGGATGATGGGTTAGACATCAAGGAGAGAATTTGTTATTTGAGTTCTATGATGGACATGGGAAGTGATGTTCAAGTTCGTGCCAGTGGAGGCCTTCTTGCCATATTAGAGAATGAAAGGATTGTAGACACACTTGAACAAATGGAATGCGGGAATTCATCTATTGCAATCGATGCTGTTATAGAAGTTTCATTAAACAATTTTCTAAAACTGGATGCTGCAGCTCATGAGGCGTTGCAGATATTCCAAACAGATAAGCATCCCAGCCATATGGGCATTGGTAGAGCAAAAGAAGGGTTTTCTGTATTTGGCATGTTGAATAAGTGTGCAACTCCTATGGGGAGGCGCCTCTTGAGGAACTGGTTCTTAAGGCCAATAATTGACCTTGAAAGTTTGAACAGTCGTCTGGATGCCATATCATTCTTTATTTCTTCAGGAGAACTAGTTATGTCTTTACGGTCAACTCTGAAATCTGTTAAGGATATTCCTCACATTCTCAAGAAATTCAACTCCCCTAGCTCTGTATGCACCAGTACTGATTGGACAGCTTTTTTGAAGAGTGTTTGCTCACTCTTGCACGTGAACAAGATATTTGAAGTAGGTGTTTCTGAGAGTCTTCAAGAGCATGCAAAATACCTGAATCTGGACATTGTTGAGAAGGCTGCTTCATGCATTACAACCGAGCTTGCTTATGTACATGAATTGGTGATTGGTGTTCTTGATGTAACCAGAAGTAAAGAGAAGGGATATGAGACAATTGTAAAAGATGATTTCTGTACTGAGTTAGATGAGCTGAGGCAAATATATGAGGAATTGCCTGAATTCCTGGAAGAGGTTGCAAAGATGGAACTTGGAAGACATCCTCAACTGTGCAAATACAAGCTCGTTCCTTGTATTGTTTACATACACCAGATAGGATACCTGATGTGCATCTTTGAAGAAAAACTTGATGAAGCTACCCTGGAGACGCTTCAAGATTTTGAGTTTGCTTTCTCTGATGCAGAAGGAGAAACAAAAAGATTCTTTTATCGTACTCCAAAGACACGAGACTTGGATAATCTTCTGGGAGATATCTATCATAAAATACTAGATATGGAGAGAGCGATCACTCGAGATCTGGTCTCGCATATACTTTTATTTTCAACGCATCTGCTTAAAGCTGTAAATTTTGTAGCTGAACTTGATTGCTTTTTGTCATTGGCGTTGGTTGCCCGTCAAAACAATTATGTAAGGCCTACTTTGACCATGGACTGCTTGCTTGATATACAAAATGGAAGACATGTTTTGCAGGACATGACGGTAGACACTTTTGTTCCCAATGATACAAAGATTCAAAATGATGGAAGAATCAATATCATCACTGGTCCCAACTATTCAGGGAAAAGCATCTACATCAAGCAGGTAGCTTTGATTGTATTCCTAGCACATATAGGAAGTTTTGTTCCAGCAGATGCTGCAACTGTGGGTTTGACTGATAGAATATTCTGTGCAATGGGAAGCAAGTTCATGACTGCAGAACAATCAACATTCATGATTGATCTGCATCAAGTAGGGATGATGCTAAGGCAGGCAACATCACGGTCTTTGTGTCTGTTGGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGCGTTGGTCTGCTTGGTGGAACCATAAACTACTTCGCGTCATATGATTCACCACCAAAGGTTCTAGTGTGCAGCCATTTGACTGAGTTATTCAGCGAGAGTTGCTTACCTAAATCCAAGAAGATCACATTTTACACTATGAGTGTGCTGAGGCCTGACAACTCCACAGATATTGAGGATATTGTTTTCCTGTATAGGCTAGTTCCTGGGCATGCACTACTTAGTTATGGTCTGCATTGTGCACTACTTGCTGGTGTCCCTGAGGAAGTTATCAAGAGAGCAGCATTTATATTGGAAGCTATTGGAAATAATCAGCACGTCGAGCGATTGTGCAATGAGAATTTAGCAATTCAGGATCAGGAATACCAGACAGTAGTGGACAAAATGCTGGCATTTGATGTTCACAAGGGCGATTTAGGCCTGTTCTTTCAGGACTTATTTTCTCCTCCGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000710 GO:0000712 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0010777 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

810

Amino Acids

91.21

Weight (kDa)

5.13

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_III	PF05192	190 - 516	4e-33	MutS domain III
MutS_V	PF00488	567 - 743	6.3e-41	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20475 AT3G20475 AT3G20475
fragaria_vesca	FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000
malus_domestica	MD11G1214700.v1.1
prunus_persica	Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0040391 RchiOBHm_Chr5g0040451
rosa_laevigata	RLG00000033976
rosa_multiflora	Rmu_sc0004516.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040210 Rroxscaffold_1G00040250 Rroxscaffold_1G00040300 Rroxscaffold_1G00040940
rosa_rugosa	Rorug05G0184700
rosa_samantha	Rh5AG272000 Rh5BG275900 Rh5CG308000 Rh5DG284100
rosa_wichuraiana	Rw5G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1735
AccB1I	GGYRCC	1 cut(s)	690
AccI	GTMKAC	2 cut(s)	471, 1647
AccII	CGCG	1 cut(s)	2012
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	1 cut(s)	2337
AcsI	RAATTY	7 cut(s)	375, 499, 848, 1166, 1510, 1946, 2314
AcuI	CTGAAG	1 cut(s)	762
AcvI	CACGTG	2 cut(s)	115, 925
AcyI	GRCGYC	1 cut(s)	691
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	7 cut(s)	44, 329, 880, 1041, 1123, 1378, 1960
AfiI	CCNNNNNNNGG	2 cut(s)	988, 1177
AflII	CTTAAG	1 cut(s)	712
AflIII	ACRYGT	1 cut(s)	1624
AhlI	ACTAGT	1 cut(s)	787
AjiI	CACGTC	1 cut(s)	2293
AjnI	CCWGG	3 cut(s)	1170, 1305, 2179
AjuI	GAANNNNNNNTTGG	4 cut(s)	1038, 1070, 1962, 1994
AloI	GAACNNNNNNTCC	4 cut(s)	399, 431, 1770, 1802
Alw21I	GWGCWC	1 cut(s)	2218
Alw26I	GTCTC	4 cut(s)	1091, 1304, 1386, 1471
Alw44I	GTGCAC	1 cut(s)	2214
AlwI	GGATC	1 cut(s)	2337
AlwNI	CAGNNNCTG	1 cut(s)	1799
Ama87I	CYCGRG	1 cut(s)	1455
AoxI	GGCC	5 cut(s)	436, 716, 1577, 2126, 2392
ApaLI	GTGCAC	1 cut(s)	2214
ApeKI	GCWGC	6 cut(s)	563, 566, 1007, 1799, 2046, 2255
ApoI	RAATTY	7 cut(s)	375, 499, 848, 1166, 1510, 1946, 2314
ArsI	GACNNNNNNTTYG	2 cut(s)	880, 912
AseI	ATTAAT	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	1 cut(s)	1709
AsuHPI	GGTGA	4 cut(s)	59, 178, 1063, 2016
AvaI	CYCGRG	1 cut(s)	1455
AvaII	GGWCC	1 cut(s)	1709
AxyI	CCTNAGG	2 cut(s)	36, 2235
BaeGI	GKGCMC	1 cut(s)	2218
BanI	GGYRCC	1 cut(s)	690
BauI	CACGAG	1 cut(s)	1389
BbrPI	CACGTG	2 cut(s)	115, 925
BbsI	GAAGAC	3 cut(s)	953, 1207, 1627
Bbv12I	GWGCWC	1 cut(s)	2218
BbvCI	CCTCAGC	2 cut(s)	1139, 2123
BbvI	GCAGC	6 cut(s)	550, 578, 994, 1786, 2058, 2267
BccI	CCATC	8 cut(s)	112, 128, 242, 347, 391, 1183, 1679, 1967
BciT130I	CCWGG	3 cut(s)	1172, 1307, 2181
BciVI	GTATCC	1 cut(s)	1256
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	4 cut(s)	1091, 1304, 1386, 1471
BcuI	ACTAGT	1 cut(s)	787
BfaI	CTAG	7 cut(s)	788, 861, 1433, 1766, 2039, 2174, 2428
BfmI	CTRYAG	2 cut(s)	564, 1857
BfoI	RGCGCY	1 cut(s)	694
BfrI	CTTAAG	1 cut(s)	712
BfuAI	ACCTGC	1 cut(s)	1735
BfuI	GTATCC	1 cut(s)	1256
BglI	GCCNNNNNGGC	1 cut(s)	618
BglII	AGATCT	1 cut(s)	1459
BisI	GCNGC	6 cut(s)	564, 567, 1008, 1800, 2047, 2256
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	6 cut(s)	565, 568, 1009, 1801, 2048, 2257
BmcAI	AGTACT	1 cut(s)	880
Bme1390I	CCNGG	3 cut(s)	1172, 1307, 2181
Bme18I	GGWCC	1 cut(s)	1709
BmeT110I	CYCGRG	1 cut(s)	1455
BmgBI	CACGTC	1 cut(s)	2293
BmgT120I	GGNCC	1 cut(s)	1709
BmiI	GGNNCC	3 cut(s)	692, 1711, 1996
BmrFI	CCNGG	3 cut(s)	1172, 1307, 2181
BpiI	GAAGAC	3 cut(s)	953, 1207, 1627
BpmI	CTGGAG	1 cut(s)	1328
Bpu10I	CCTNAGC	3 cut(s)	1139, 1907, 2123
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	718, 827
Bsa29I	ATCGAT	1 cut(s)	516
BsaAI	YACGTR	2 cut(s)	115, 925
BsaBI	GATNNNNATC	4 cut(s)	603, 1274, 1419, 1887
BsaHI	GRCGYC	1 cut(s)	691
BsaI	GGTCTC	1 cut(s)	1471
BsaJI	CCNNGG	3 cut(s)	1305, 1590, 2180
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	988, 1177
Bse1I	ACTGG	6 cut(s)	96, 429, 561, 710, 876, 1711
Bse21I	CCTNAGG	2 cut(s)	36, 2235
Bse3DI	GCAATG	2 cut(s)	1842, 2314
Bse8I	GATNNNNATC	4 cut(s)	603, 1274, 1419, 1887
BseBI	CCWGG	3 cut(s)	1172, 1307, 2181
BseCI	ATCGAT	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	1305, 1590, 2180
BseGI	GGATG	7 cut(s)	355, 565, 604, 760, 1204, 1905, 1948
BseJI	GATNNNNATC	4 cut(s)	603, 1274, 1419, 1887
BseLI	CCNNNNNNNGG	2 cut(s)	988, 1177
BseMI	GCAATG	2 cut(s)	1842, 2314
BseMII	CTCAG	7 cut(s)	50, 945, 1116, 1130, 2049, 2114, 2226
BseNI	ACTGG	6 cut(s)	96, 429, 561, 710, 876, 1711
BseRI	GAGGAG	1 cut(s)	2409
BseSI	GKGCMC	1 cut(s)	2218
BseXI	GCAGC	6 cut(s)	550, 578, 994, 1786, 2058, 2267
BseYI	CCCAGC	1 cut(s)	608
BsgI	GTGCAG	1 cut(s)	2065
Bsh1236I	CGCG	1 cut(s)	2012
BshFI	GGCC	5 cut(s)	438, 718, 1579, 2128, 2394
BshNI	GGYRCC	1 cut(s)	690
BshVI	ATCGAT	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	2218
BsiHKCI	CYCGRG	1 cut(s)	1455
BslFI	GGGAC	2 cut(s)	1695, 2216
BslI	CCNNNNNNNGG	2 cut(s)	988, 1177
BsmAI	GTCTC	4 cut(s)	1091, 1304, 1386, 1471
BsmBI	CGTCTC	1 cut(s)	1304
BsmFI	GGGAC	2 cut(s)	1695, 2216
BsmI	GAATGC	1 cut(s)	497
BsnI	GGCC	5 cut(s)	438, 718, 1579, 2128, 2394
Bso31I	GGTCTC	1 cut(s)	1471
BsoBI	CYCGRG	1 cut(s)	1455
Bsp1286I	GDGCHC	1 cut(s)	2218
Bsp1407I	TGTACA	2 cut(s)	42, 1039
Bsp143I	GATC	6 cut(s)	189, 1449, 1459, 1882, 2097, 2329
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	1590
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	5 cut(s)	438, 718, 1579, 2128, 2394
BspCNI	CTCAG	7 cut(s)	49, 946, 1117, 1131, 2050, 2115, 2227
BspDI	ATCGAT	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	2012
BspHI	TCATGA	3 cut(s)	571, 1851, 1875
BspLI	GGNNCC	3 cut(s)	692, 1711, 1996
BspMAI	CTGCAG	2 cut(s)	568, 1861
BspMI	ACCTGC	1 cut(s)	1735
BspPI	GGATC	1 cut(s)	2337
BspT107I	GGYRCC	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	1471
BsrDI	GCAATG	2 cut(s)	1842, 2314
BsrGI	TGTACA	2 cut(s)	42, 1039
BsrI	ACTGG	6 cut(s)	96, 429, 561, 710, 876, 1711
BssECI	CCNNGG	3 cut(s)	1305, 1590, 2180
BssMI	GATC	6 cut(s)	189, 1449, 1459, 1882, 2097, 2329
BssNI	GRCGYC	1 cut(s)	691
BssSI	CACGAG	1 cut(s)	1389
BssT1I	CCWWGG	1 cut(s)	1590
Bst2BI	CACGAG	1 cut(s)	1389
Bst2UI	CCWGG	3 cut(s)	1172, 1307, 2181
Bst4CI	ACNGT	7 cut(s)	746, 804, 1215, 1645, 1807, 1926, 2347
Bst6I	CTCTTC	2 cut(s)	896, 1170
BstACI	GRCGYC	1 cut(s)	691
BstAFI	CTTAAG	1 cut(s)	712
BstAPI	GCANNNNNTGC	3 cut(s)	518, 1799, 2222
BstAUI	TGTACA	2 cut(s)	42, 1039
BstBAI	YACGTR	2 cut(s)	115, 925
BstC8I	GCNNGC	7 cut(s)	309, 972, 1032, 1601, 1914, 2187, 2364
BstDSI	CCRYGG	1 cut(s)	1590
BstEII	GGTNACC	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	1175
BstF5I	GGATG	7 cut(s)	355, 565, 604, 760, 1204, 1905, 1948
BstFNI	CGCG	1 cut(s)	2012
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	6 cut(s)	192, 1452, 1462, 1885, 2100, 2332
BstMAI	GTCTC	4 cut(s)	1091, 1304, 1386, 1471
BstMBI	GATC	6 cut(s)	189, 1449, 1459, 1882, 2097, 2329
BstNI	CCWGG	3 cut(s)	1172, 1307, 2181
BstNSI	RCATGY	5 cut(s)	54, 661, 974, 1628, 2189
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	1170, 1305, 2179
BstSFI	CTRYAG	2 cut(s)	564, 1857
BstSLI	GKGCMC	1 cut(s)	2218
BstUI	CGCG	1 cut(s)	2012
BstV1I	GCAGC	6 cut(s)	550, 578, 994, 1786, 2058, 2267
BstV2I	GAAGAC	3 cut(s)	953, 1207, 1627
BstX2I	RGATCY	1 cut(s)	1459
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	1459
Bsu15I	ATCGAT	1 cut(s)	516
Bsu36I	CCTNAGG	2 cut(s)	36, 2235
BsuI	GTATCC	1 cut(s)	1256
BsuRI	GGCC	5 cut(s)	438, 718, 1579, 2128, 2394
BsuTUI	ATCGAT	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	1590
BtrI	CACGTC	1 cut(s)	2293
BtsCI	GGATG	7 cut(s)	355, 565, 604, 760, 1204, 1905, 1948
BtsIMutI	CAGTG	3 cut(s)	185, 436, 1704
BveI	ACCTGC	1 cut(s)	1735
Cac8I	GCNNGC	7 cut(s)	309, 972, 1032, 1601, 1914, 2187, 2364
CaiI	CAGNNNCTG	1 cut(s)	1799
CciI	TCATGA	3 cut(s)	571, 1851, 1875
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	1 cut(s)	1709
ClaI	ATCGAT	1 cut(s)	516
CseI	GACGC	2 cut(s)	1321, 2001
Csp6I	GTAC	7 cut(s)	43, 328, 879, 1040, 1122, 1377, 1959
CspCI	CAANNNNNGTGG	2 cut(s)	2128, 2163
CviQI	GTAC	7 cut(s)	43, 328, 879, 1040, 1122, 1377, 1959
DinI	GGCGCC	1 cut(s)	692
DpnI	GATC	6 cut(s)	191, 1451, 1461, 1884, 2099, 2331
DpnII	GATC	6 cut(s)	189, 1449, 1459, 1882, 2097, 2329
DraIII	CACNNNGTG	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	896, 1170
EarI	CTCTTC	2 cut(s)	896, 1170
Eco130I	CCWWGG	1 cut(s)	1590
Eco147I	AGGCCT	4 cut(s)	438, 1579, 2128, 2394
Eco31I	GGTCTC	1 cut(s)	1471
Eco32I	GATATC	1 cut(s)	1417
Eco47I	GGWCC	1 cut(s)	1709
Eco57I	CTGAAG	1 cut(s)	762
Eco72I	CACGTG	2 cut(s)	115, 925
Eco81I	CCTNAGG	2 cut(s)	36, 2235
Eco88I	CYCGRG	1 cut(s)	1455
Eco91I	GGTNACC	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	1175
EcoO65I	GGTNACC	1 cut(s)	65
EcoRI	GAATTC	2 cut(s)	499, 1166
EcoRII	CCWGG	3 cut(s)	1170, 1305, 2179
EcoRV	GATATC	1 cut(s)	1417
EcoT14I	CCWWGG	1 cut(s)	1590
EcoT22I	ATGCAT	1 cut(s)	1019
EgeI	GGCGCC	1 cut(s)	692
EheI	GGCGCC	1 cut(s)	692
ErhI	CCWWGG	1 cut(s)	1590
Esp3I	CGTCTC	1 cut(s)	1304
FalI	AAGNNNNNCTT	6 cut(s)	1275, 1307, 1567, 1599, 1947, 1979
FaqI	GGGAC	2 cut(s)	1695, 2216
FauI	CCCGC	1 cut(s)	488
FauNDI	CATATG	2 cut(s)	615, 2017
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	2 cut(s)	471, 1647
Fnu4HI	GCNGC	6 cut(s)	564, 567, 1008, 1800, 2047, 2256
FokI	GGATG	7 cut(s)	362, 572, 591, 767, 1191, 1912, 1955
Fsp4HI	GCNGC	6 cut(s)	564, 567, 1008, 1800, 2047, 2256
FspBI	CTAG	7 cut(s)	788, 861, 1433, 1766, 2039, 2174, 2428
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	6 cut(s)	564, 567, 1008, 1800, 2047, 2256
GsaI	CCCAGC	1 cut(s)	612
GsuI	CTGGAG	1 cut(s)	1328
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	5 cut(s)	438, 718, 1579, 2128, 2394
HgaI	GACGC	2 cut(s)	1321, 2001
HhaI	GCGC	1 cut(s)	693
Hin1I	GRCGYC	1 cut(s)	691
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HincII	GTYRAC	1 cut(s)	807
HindII	GTYRAC	1 cut(s)	807
HindIII	AAGCTT	2 cut(s)	219, 275
HinfI	GANTC	7 cut(s)	92, 958, 985, 1365, 1675, 1692, 2021
HphI	GGTGA	4 cut(s)	59, 178, 1063, 2016
Hpy166II	GTNNAC	9 cut(s)	43, 472, 807, 928, 1246, 1648, 2216, 2353, 2377
Hpy188I	TCNGA	3 cut(s)	813, 955, 1342
Hpy8I	GTNNAC	9 cut(s)	43, 472, 807, 928, 1246, 1648, 2216, 2353, 2377
Hpy99I	CGWCG	1 cut(s)	2297
HpyAV	CCTTC	6 cut(s)	341, 449, 632, 997, 1081, 1343
HpyCH4III	ACNGT	7 cut(s)	746, 804, 1215, 1645, 1807, 1926, 2347
HpyCH4IV	ACGT	3 cut(s)	114, 924, 2292
HpySE526I	ACGT	3 cut(s)	114, 924, 2292
Hsp92I	GRCGYC	1 cut(s)	691
HspAI	GCGC	1 cut(s)	691
KasI	GGCGCC	1 cut(s)	690
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	6 cut(s)	189, 1449, 1459, 1882, 2097, 2329
Lsp1109I	GCAGC	6 cut(s)	550, 578, 994, 1786, 2058, 2267
MaeI	CTAG	7 cut(s)	788, 861, 1433, 1766, 2039, 2174, 2428
MaeII	ACGT	3 cut(s)	114, 924, 2292
MaeIII	GTNAC	3 cut(s)	65, 337, 1069
MalI	GATC	6 cut(s)	191, 1451, 1461, 1884, 2099, 2331
MboI	GATC	6 cut(s)	189, 1449, 1459, 1882, 2097, 2329
MfeI	CAATTG	1 cut(s)	1101
MflI	RGATCY	1 cut(s)	1459
MhlI	GDGCHC	1 cut(s)	2218
Mly113I	GGCGCC	1 cut(s)	691
MlyI	GAGTC	1 cut(s)	967
MmeI	TCCRAC	1 cut(s)	1920
Mph1103I	ATGCAT	1 cut(s)	1019
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	5 cut(s)	323, 539, 713, 822, 1500
MspCI	CTTAAG	1 cut(s)	712
MspR9I	CCNGG	3 cut(s)	1172, 1307, 2181
MunI	CAATTG	1 cut(s)	1101
Mva1269I	GAATGC	1 cut(s)	497
MvaI	CCWGG	3 cut(s)	1172, 1307, 2181
MvnI	CGCG	1 cut(s)	2012
NarI	GGCGCC	1 cut(s)	691
NcoI	CCATGG	1 cut(s)	1590
NdeI	CATATG	2 cut(s)	615, 2017
NdeII	GATC	6 cut(s)	189, 1449, 1459, 1882, 2097, 2329
NlaIV	GGNNCC	3 cut(s)	692, 1711, 1996
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	1019
NspI	RCATGY	5 cut(s)	54, 661, 974, 1628, 2189
PaeI	GCATGC	2 cut(s)	974, 2189
PaeR7I	CTCGAG	1 cut(s)	1455
PagI	TCATGA	3 cut(s)	571, 1851, 1875
PceI	AGGCCT	4 cut(s)	438, 1579, 2128, 2394
PciI	ACATGT	1 cut(s)	1624
PctI	GAATGC	1 cut(s)	497
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	6 cut(s)	92, 985, 1365, 1675, 1692, 2021
PflFI	GACNNNGTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	1170
PkrI	GCNGC	6 cut(s)	565, 568, 1009, 1801, 2048, 2257
PleI	GAGTC	1 cut(s)	966
PluTI	GGCGCC	1 cut(s)	694
PmaCI	CACGTG	2 cut(s)	115, 925
PmlI	CACGTG	2 cut(s)	115, 925
PpsI	GAGTC	1 cut(s)	966
Ppu21I	YACGTR	2 cut(s)	115, 925
PscI	ACATGT	1 cut(s)	1624
PshBI	ATTAAT	1 cut(s)	323
Psp6I	CCWGG	3 cut(s)	1170, 1305, 2179
PspCI	CACGTG	2 cut(s)	115, 925
PspEI	GGTNACC	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	3 cut(s)	1170, 1305, 2179
PspN4I	GGNNCC	3 cut(s)	692, 1711, 1996
PspPI	GGNCC	1 cut(s)	1709
PstI	CTGCAG	2 cut(s)	568, 1861
PstNI	CAGNNNCTG	1 cut(s)	1799
PsuI	RGATCY	1 cut(s)	1459
PsyI	GACNNNGTC	1 cut(s)	63
RsaI	GTAC	7 cut(s)	44, 329, 880, 1041, 1123, 1378, 1960
RsaNI	GTAC	7 cut(s)	43, 328, 879, 1040, 1122, 1377, 1959
SaqAI	TTAA	5 cut(s)	323, 539, 713, 822, 1500
SatI	GCNGC	6 cut(s)	564, 567, 1008, 1800, 2047, 2256
Sau3AI	GATC	6 cut(s)	189, 1449, 1459, 1882, 2097, 2329
Sau96I	GGNCC	1 cut(s)	1709
ScaI	AGTACT	1 cut(s)	880
SchI	GAGTC	1 cut(s)	967
ScrFI	CCNGG	3 cut(s)	1172, 1307, 2181
SduI	GDGCHC	1 cut(s)	2218
SfcI	CTRYAG	2 cut(s)	564, 1857
SfoI	GGCGCC	1 cut(s)	692
Sfr274I	CTCGAG	1 cut(s)	1455
SinI	GGWCC	1 cut(s)	1709
SlaI	CTCGAG	1 cut(s)	1455
SmlI	CTYRAG	4 cut(s)	697, 712, 842, 1455
SmoI	CTYRAG	4 cut(s)	697, 712, 842, 1455
SpeI	ACTAGT	1 cut(s)	787
SphI	GCATGC	2 cut(s)	974, 2189
SseBI	AGGCCT	4 cut(s)	438, 1579, 2128, 2394
SsiI	CCGC	1 cut(s)	495
SspDI	GGCGCC	1 cut(s)	690
SspI	AATATT	1 cut(s)	1827
SspMI	CTAG	7 cut(s)	788, 861, 1433, 1766, 2039, 2174, 2428
StuI	AGGCCT	4 cut(s)	438, 1579, 2128, 2394
StyD4I	CCNGG	3 cut(s)	1170, 1305, 2179
StyI	CCWWGG	1 cut(s)	1590
TaaI	ACNGT	7 cut(s)	746, 804, 1215, 1645, 1807, 1926, 2347
TaiI	ACGT	3 cut(s)	117, 927, 2295
TaqI	TCGA	5 cut(s)	58, 334, 516, 1456, 2295
TatI	WGTACW	4 cut(s)	42, 878, 1039, 1121
TfiI	GAWTC	6 cut(s)	92, 985, 1365, 1675, 1692, 2021
Tru1I	TTAA	5 cut(s)	323, 539, 713, 822, 1500
Tru9I	TTAA	5 cut(s)	323, 539, 713, 822, 1500
TscAI	CASTG	3 cut(s)	192, 436, 1711
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	6 cut(s)	563, 566, 1007, 1799, 2046, 2255
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	9 cut(s)	474, 492, 525, 1002, 1059, 1311, 1840, 1864, 1959
TspGWI	ACGGA	1 cut(s)	2412
TspRI	CASTG	3 cut(s)	192, 436, 1711
Tth111I	GACNNNGTC	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	712
VneI	GTGCAC	1 cut(s)	2214
VpaK11BI	GGWCC	1 cut(s)	1709
VspI	ATTAAT	1 cut(s)	323
XagI	CCTNNNNNAGG	1 cut(s)	1175
XapI	RAATTY	7 cut(s)	375, 499, 848, 1166, 1510, 1946, 2314
XceI	RCATGY	5 cut(s)	54, 661, 974, 1628, 2189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XhoI	CTCGAG	1 cut(s)	1455
XmiI	GTMKAC	2 cut(s)	471, 1647
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	7 cut(s)	788, 861, 1433, 1766, 2039, 2174, 2428
ZrmI	AGTACT	1 cut(s)	880
Zsp2I	ATGCAT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.