Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002530

Physical Location & Seq

Genomic Coordinates Forward (+)

57948837 .. 57960901

Gene Structure 12065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGCATCAAGACCTCCTTCATCCAAATCTTCAAGACCCCCGCGCATGCAGCCAAGAAAGCCAAGCATCTCCTCAAGGCCCGCCTCGGTTAAGGTCTTGGCCGATCGGTTCCGAGGCCGGGAGGGGGGTTGTGCATATCCGGACTTCTTGTCGCAACTCGTTTGTAGTCCAGGTCATCGGTGAGTCCTCACATGGACTTCCCCTAATTGATATGGTGAAATATCAAGCTAAGCCACTGATCATCTACACAAGCACAAAAAGCGAGGAAGCTTTCTTGTCTGCTTTACAACGAAGTGATGGAACAACAGAGGCTTTTACTGTCAAGCTTGTGAAAAGTTCAGTATTTAGCTATGAGCAAGCATGGCACAGATTGATATATCTTCGAGTAACAGGAATGGATGATGGGTTAGACATCAAGGAAAGAATTTGTTATTTGAGTTCTATGATGGACATGGGAAGTGATGTTCAAGTTCGTACCAGTGGAGGCCTTCTTGCCATATTAGAGAATGAAAGGATTGTAGACACACTTGAACAAATGGAATGCGGCAATGCATCTATTGCAATCGATTCAGTTATAGAAGTTTCATTGTATCTTTTTATTTGTCTTTTGAGTGAGCTCTGTTCTTTTCATTGGGGAAACAATTTTCTAAAACTTGATGCTGCAGCTCATGAGGCGTTGCAGATATTCCAAACAGATAAGCATCCCAGCCATATGGGCATTGGTAGAGCAAAAGAAGGGTTTTCTGTGTTTGGCATGTTGAATAAGTGTGTAACTCCTATTGGGAGGCGCCTCTTGAGGAGCTGGTTCCTAAGGCCAATAATTGACCTTGAAATTTTGAACAGTCGTCTTGATGCCATATCATTCTTTATATCTTCAGAAGAACTAATTATGTCTTTACAGTCAACTCTGAAATCTGTTAAGGATATTCCTCACATACTCAAGAAATTCAACTCCCCAAGCTCCGTATGTACCAGTACTGATTGGACAGCTTTTCTAAAGAGTGTTTGCTCACTCTTGCACGTGAACAAGATATTTGAAGTGGGTGTTTCTGAGAGTCTTCAAGAGCATGCCAAGTACCTGAATTTGGACATTGTTGAGAAGGCTGCTTCATGCATTACAACTGAGCTTGCTTATGTATATGAATTGGTAATTGGTGTTCTTGACATAAACAGAAGTAAAGAGAAGGGATATGAGACAATTGTAAAAGATGACTTCTGTACTGAGTTAGATGAGCTGAGGCAAATATATGAGGAATTGCCTGAATTTCTGGAAGAGGTTTCAAAAATGGAACTTGGAAGACTTCCACAGCTGTGCAAAGACAAGCTTGTTCCTTGTATTGTTTATATACACCAGATAGGATACTTGATGTGCATTTTTGAAGAAAAACTTGATGAAGCTACCCTGGAGACACTTCAAGATTTTGAGTTTGCTTTCTCTGATGCAGAAGGAGAAACAAAAAGATTCTTTTATCGTACTCCAAAGACACGAGAGTTGGATAATCTTCTGGGAGATATCTATCATAAAATACTAGATATGGAGAGGGCGATCACTCGAGATCTGGTGTCACATATACTTCTATTTTCAATGCATCTGCTTAAAGCTGTAAATTTTGCAGCTGAACTTGATTGCTTTTTGTCATTGGCACTGGTTGCCCGTCAAAACAATTATGTAAGGCCTACTTTGACCACGGACTGCTTGCTTGATATACAAAATGGAAGACATGTTTTGCAGGAAATGACGGTAGATACTTTTGTTCCCAATGATACAACGATTCAAAATGATGGGAGAATTAATATCATCACTGGTCCCAACTATTCAGGGAAAAGCATCTACATAAAGCAGGTAGCTTTGATTGTTTTCCTAGCCCATATAGGAAGTTTTGTTCCGGCAGATGCTGCAACTGTGGGTTTGACTGATAGAATATTCTGCGCAATGGGAAGCAAGCTCATGGCTGCAGAACAATCAACGTTCATGATTGATCTGCATCAAGTAGGGATGATGCTTAGGCAGGCAACTTCACGGTCTTTGTGTCTCTTGGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGCGTTGGTCTGCTTGGTGGAACCATAAACTACTTGGTGTCCTATGATGACCCCCCAAAGGTTCTAGTGTGCACCCACTTGACTGAGTTATTCAGCGAGAGTTGCTTACCTGAATCCAAGAAGATCACATTTTACACTATGAGTGTGCTGAGGCCTGACAACTTGACAGATATTGAGGATATTGTTTTCCTATATAGGCTAGTTCCTGGGCATGCACTACGTAGTTATGGTCTTCATTGTGCTCTACTTGCTGGTGTCCCGGAGGAAGTTATCAAGAGAGCAGCATTTGTATTGGAAGCCATTGGAAATAATCAGCATGTCGAGCGATTGTGCAATGAGAATTTATCAGTTCAGGATCAGCAATACCAGAGAGTAGTGGACAAAATGTTGGCATTTGATGTTCACAATGGCGATTTAGGCCTGTTCTTTCAGGACTTATTTTCTCCTGCGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000710 GO:0000712 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0010777 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

841

Amino Acids

94.56

Weight (kDa)

5.22

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_III	PF05192	222 - 548	1.5e-31	MutS domain III
MutS_V	PF00488	599 - 790	2.6e-48	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20475 AT3G20475 AT3G20475
fragaria_vesca	FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000
malus_domestica	MD11G1214700.v1.1
prunus_persica	Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0040391 RchiOBHm_Chr5g0040451
rosa_laevigata	RLG00000033976
rosa_multiflora	Rmu_sc0004516.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040210 Rroxscaffold_1G00040250 Rroxscaffold_1G00040300 Rroxscaffold_1G00040940
rosa_rugosa	Rorug05G0184700
rosa_samantha	Rh5AG272000 Rh5BG275900 Rh5CG308000 Rh5DG284100
rosa_wichuraiana	Rw5G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1930
Acc36I	ACCTGC	1 cut(s)	1831
AccB1I	GGYRCC	1 cut(s)	786
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	3 cut(s)	40, 80, 543
AclI	AACGTT	1 cut(s)	1967
AclWI	GGATC	1 cut(s)	2433
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	8 cut(s)	423, 831, 944, 1081, 1262, 1606, 2042, 2410
AcuI	CTGAAG	1 cut(s)	858
AcvI	CACGTG	1 cut(s)	1021
AcyI	GRCGYC	1 cut(s)	787
AfaI	GTAC	7 cut(s)	475, 970, 976, 1076, 1219, 1474, 2056
AfiI	CCNNNNNNNGG	4 cut(s)	117, 123, 1084, 2128
AflIII	ACRYGT	1 cut(s)	1720
AhdI	GACNNNNNGTC	1 cut(s)	147
AjnI	CCWGG	3 cut(s)	168, 1401, 2275
AjuI	GAANNNNNNNTTGG	4 cut(s)	1134, 1166, 2058, 2090
AleI	CACNNNNGTG	1 cut(s)	1309
AloI	GAACNNNNNNTCC	4 cut(s)	447, 479, 1866, 1898
Alw21I	GWGCWC	3 cut(s)	618, 2144, 2314
Alw26I	GTCTC	3 cut(s)	1187, 1400, 2036
Alw44I	GTGCAC	1 cut(s)	2140
AlwI	GGATC	1 cut(s)	2433
AlwNI	CAGNNNCTG	1 cut(s)	1895
Ama87I	CYCGRG	1 cut(s)	1551
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	8 cut(s)	76, 98, 114, 484, 812, 1673, 2222, 2488
ApaLI	GTGCAC	1 cut(s)	2140
ApeKI	GCWGC	8 cut(s)	48, 659, 662, 1103, 1613, 1895, 1952, 2351
ApoI	RAATTY	8 cut(s)	423, 831, 944, 1081, 1262, 1606, 2042, 2410
AseI	ATTAAT	1 cut(s)	1791
AspLEI	GCGC	3 cut(s)	44, 789, 1931
AspS9I	GGNCC	2 cut(s)	77, 1805
AsuC2I	CCSGG	2 cut(s)	118, 2330
AsuHPI	GGTGA	2 cut(s)	191, 226
AvaI	CYCGRG	1 cut(s)	1551
AvaII	GGWCC	1 cut(s)	1805
AxyI	CCTNAGG	1 cut(s)	809
BaeGI	GKGCMC	1 cut(s)	2144
BaeI	ACNNNNGTAYC	2 cut(s)	1737, 1770
BanI	GGYRCC	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	618
BauI	CACGAG	1 cut(s)	1485
BbrPI	CACGTG	1 cut(s)	1021
BbsI	GAAGAC	4 cut(s)	1049, 1303, 1723, 2294
Bbv12I	GWGCWC	3 cut(s)	618, 2144, 2314
BbvCI	CCTCAGC	2 cut(s)	1235, 2219
BbvI	GCAGC	8 cut(s)	60, 646, 674, 1090, 1625, 1882, 1939, 2363
BccI	CCATC	5 cut(s)	290, 395, 439, 1775, 2063
BciT130I	CCWGG	3 cut(s)	170, 1403, 2277
BciVI	GTATCC	1 cut(s)	1352
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	118, 2330
BcoDI	GTCTC	3 cut(s)	1187, 1400, 2036
BfaI	CTAG	5 cut(s)	1529, 1862, 2135, 2270, 2524
BfmI	CTRYAG	2 cut(s)	660, 1953
BfoI	RGCGCY	1 cut(s)	790
BfuAI	ACCTGC	1 cut(s)	1831
BfuI	GTATCC	1 cut(s)	1352
BglI	GCCNNNNNGGC	1 cut(s)	714
BglII	AGATCT	1 cut(s)	1555
BisI	GCNGC	9 cut(s)	49, 544, 660, 663, 1104, 1614, 1896, 1953, 2352
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	9 cut(s)	50, 545, 661, 664, 1105, 1615, 1897, 1954, 2353
BmcAI	AGTACT	1 cut(s)	976
Bme1390I	CCNGG	5 cut(s)	118, 170, 1403, 2277, 2330
Bme18I	GGWCC	1 cut(s)	1805
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	1551
BmgT120I	GGNCC	2 cut(s)	77, 1805
BmiI	GGNNCC	5 cut(s)	109, 788, 806, 1807, 2092
BmrFI	CCNGG	5 cut(s)	118, 170, 1403, 2277, 2330
BpiI	GAAGAC	4 cut(s)	1049, 1303, 1723, 2294
BpmI	CTGGAG	1 cut(s)	1424
Bpu10I	CCTNAGC	3 cut(s)	1235, 2003, 2219
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	3 cut(s)	57, 814, 923
BpuMI	CCSGG	2 cut(s)	118, 2330
Bsa29I	ATCGAT	1 cut(s)	564
BsaAI	YACGTR	2 cut(s)	1021, 2291
BsaBI	GATNNNNATC	3 cut(s)	699, 1515, 1983
BsaHI	GRCGYC	1 cut(s)	787
BsaJI	CCNNGG	5 cut(s)	83, 111, 1401, 1686, 2276
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 123, 1084, 2128
Bse1I	ACTGG	4 cut(s)	477, 972, 1650, 1807
Bse21I	CCTNAGG	1 cut(s)	809
Bse3DI	GCAATG	3 cut(s)	553, 1938, 2410
Bse8I	GATNNNNATC	3 cut(s)	699, 1515, 1983
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	3 cut(s)	170, 1403, 2277
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	5 cut(s)	83, 111, 1401, 1686, 2276
BseGI	GGATG	5 cut(s)	19, 403, 700, 2001, 2044
BseJI	GATNNNNATC	3 cut(s)	699, 1515, 1983
BseLI	CCNNNNNNNGG	4 cut(s)	117, 123, 1084, 2128
BseMI	GCAATG	3 cut(s)	553, 1938, 2410
BseMII	CTCAG	6 cut(s)	1041, 1113, 1212, 1226, 2145, 2210
BseNI	ACTGG	4 cut(s)	477, 972, 1650, 1807
BseRI	GAGGAG	2 cut(s)	60, 811
BseSI	GKGCMC	1 cut(s)	2144
BseXI	GCAGC	8 cut(s)	60, 646, 674, 1090, 1625, 1882, 1939, 2363
BseYI	CCCAGC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	8 cut(s)	78, 100, 116, 486, 814, 1675, 2224, 2490
BshNI	GGYRCC	1 cut(s)	786
BshVI	ATCGAT	1 cut(s)	564
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	3 cut(s)	618, 2144, 2314
BsiHKCI	CYCGRG	1 cut(s)	1551
BsiSI	CCGG	4 cut(s)	117, 139, 1886, 2330
BslFI	GGGAC	2 cut(s)	1791, 2312
BslI	CCNNNNNNNGG	4 cut(s)	117, 123, 1084, 2128
BsmAI	GTCTC	3 cut(s)	1187, 1400, 2036
BsmFI	GGGAC	2 cut(s)	1791, 2312
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	8 cut(s)	78, 100, 116, 486, 814, 1675, 2224, 2490
BsoBI	CYCGRG	1 cut(s)	1551
Bsp1286I	GDGCHC	3 cut(s)	618, 2144, 2314
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	7 cut(s)	102, 237, 1545, 1555, 1978, 2193, 2425
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	3 cut(s)	40, 80, 543
BspANI	GGCC	8 cut(s)	78, 100, 116, 486, 814, 1675, 2224, 2490
BspCNI	CTCAG	6 cut(s)	1042, 1114, 1213, 1227, 2146, 2211
BspDI	ATCGAT	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	2 cut(s)	667, 1971
BspLI	GGNNCC	5 cut(s)	109, 788, 806, 1807, 2092
BspMAI	CTGCAG	2 cut(s)	664, 1957
BspMI	ACCTGC	1 cut(s)	1831
BspPI	GGATC	1 cut(s)	2433
BspT107I	GGYRCC	1 cut(s)	786
BsrDI	GCAATG	3 cut(s)	553, 1938, 2410
BsrI	ACTGG	4 cut(s)	477, 972, 1650, 1807
BssECI	CCNNGG	5 cut(s)	83, 111, 1401, 1686, 2276
BssMI	GATC	7 cut(s)	102, 237, 1545, 1555, 1978, 2193, 2425
BssNI	GRCGYC	1 cut(s)	787
BssSI	CACGAG	1 cut(s)	1485
Bst2BI	CACGAG	1 cut(s)	1485
Bst2UI	CCWGG	3 cut(s)	170, 1403, 2277
Bst4CI	ACNGT	6 cut(s)	319, 842, 900, 1741, 1903, 2022
Bst6I	CTCTTC	1 cut(s)	1266
BstACI	GRCGYC	1 cut(s)	787
BstAPI	GCANNNNNTGC	3 cut(s)	557, 1649, 1895
BstBAI	YACGTR	2 cut(s)	1021, 2291
BstC8I	GCNNGC	9 cut(s)	46, 80, 357, 1068, 1128, 1697, 1943, 2010, 2283
BstDEI	CTNAG	9 cut(s)	228, 809, 1050, 1122, 1221, 1235, 2003, 2154, 2219
BstDSI	CCRYGG	1 cut(s)	1686
BstF5I	GGATG	5 cut(s)	19, 403, 700, 2001, 2044
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	790
BstHHI	GCGC	3 cut(s)	44, 789, 1931
BstKTI	GATC	7 cut(s)	105, 240, 1548, 1558, 1981, 2196, 2428
BstMAI	GTCTC	3 cut(s)	1187, 1400, 2036
BstMBI	GATC	7 cut(s)	102, 237, 1545, 1555, 1978, 2193, 2425
BstMCI	CGRYCG	1 cut(s)	105
BstNI	CCWGG	3 cut(s)	170, 1403, 2277
BstNSI	RCATGY	6 cut(s)	48, 757, 1070, 1724, 2285, 2390
BstSCI	CCNGG	5 cut(s)	116, 168, 1401, 2275, 2328
BstSFI	CTRYAG	2 cut(s)	660, 1953
BstSLI	GKGCMC	1 cut(s)	2144
BstSNI	TACGTA	1 cut(s)	2291
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	8 cut(s)	60, 646, 674, 1090, 1625, 1882, 1939, 2363
BstV2I	GAAGAC	4 cut(s)	1049, 1303, 1723, 2294
BstX2I	RGATCY	1 cut(s)	1555
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	1555
Bsu15I	ATCGAT	1 cut(s)	564
Bsu36I	CCTNAGG	1 cut(s)	809
BsuI	GTATCC	1 cut(s)	1352
BsuRI	GGCC	8 cut(s)	78, 100, 116, 486, 814, 1675, 2224, 2490
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	1686
BtsCI	GGATG	5 cut(s)	19, 403, 700, 2001, 2044
BtsIMutI	CAGTG	4 cut(s)	233, 484, 1643, 1800
BveI	ACCTGC	1 cut(s)	1831
Cac8I	GCNNGC	9 cut(s)	46, 80, 357, 1068, 1128, 1697, 1943, 2010, 2283
CaiI	CAGNNNCTG	1 cut(s)	1895
CciI	TCATGA	2 cut(s)	667, 1971
CfoI	GCGC	3 cut(s)	44, 789, 1931
Cfr13I	GGNCC	2 cut(s)	77, 1805
ClaI	ATCGAT	1 cut(s)	564
CseI	GACGC	1 cut(s)	2508
Csp6I	GTAC	7 cut(s)	474, 969, 975, 1075, 1218, 1473, 2055
CviQI	GTAC	7 cut(s)	474, 969, 975, 1075, 1218, 1473, 2055
DdeI	CTNAG	9 cut(s)	228, 809, 1050, 1122, 1221, 1235, 2003, 2154, 2219
DinI	GGCGCC	1 cut(s)	788
DpnI	GATC	7 cut(s)	104, 239, 1547, 1557, 1980, 2195, 2427
DpnII	GATC	7 cut(s)	102, 237, 1545, 1555, 1978, 2193, 2425
DriI	GACNNNNNGTC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	1266
Eam1105I	GACNNNNNGTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	1266
Ecl136II	GAGCTC	1 cut(s)	616
Eco105I	TACGTA	1 cut(s)	2291
Eco147I	AGGCCT	4 cut(s)	486, 1675, 2224, 2490
Eco24I	GRGCYC	1 cut(s)	618
Eco32I	GATATC	1 cut(s)	1513
Eco47I	GGWCC	1 cut(s)	1805
Eco53kI	GAGCTC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	858
Eco72I	CACGTG	1 cut(s)	1021
Eco81I	CCTNAGG	1 cut(s)	809
Eco88I	CYCGRG	1 cut(s)	1551
EcoICRI	GAGCTC	1 cut(s)	616
EcoRII	CCWGG	3 cut(s)	168, 1401, 2275
EcoRV	GATATC	1 cut(s)	1513
EcoT22I	ATGCAT	4 cut(s)	6, 553, 1115, 1590
EcoT38I	GRGCYC	1 cut(s)	618
EgeI	GGCGCC	1 cut(s)	788
EheI	GGCGCC	1 cut(s)	788
FalI	AAGNNNNNCTT	9 cut(s)	32, 1308, 1340, 1371, 1403, 1663, 1695, 2043, 2075
FaqI	GGGAC	2 cut(s)	1791, 2312
FauI	CCCGC	2 cut(s)	47, 87
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	9 cut(s)	49, 544, 660, 663, 1104, 1614, 1896, 1953, 2352
FokI	GGATG	5 cut(s)	6, 410, 687, 2008, 2051
FriOI	GRGCYC	1 cut(s)	618
Fsp4HI	GCNGC	9 cut(s)	49, 544, 660, 663, 1104, 1614, 1896, 1953, 2352
FspBI	CTAG	5 cut(s)	1529, 1862, 2135, 2270, 2524
FspI	TGCGCA	1 cut(s)	1930
GlaI	GCGC	3 cut(s)	43, 788, 1930
GluI	GCNGC	9 cut(s)	49, 544, 660, 663, 1104, 1614, 1896, 1953, 2352
GsaI	CCCAGC	1 cut(s)	708
GsuI	CTGGAG	1 cut(s)	1424
HaeII	RGCGCY	1 cut(s)	790
HaeIII	GGCC	8 cut(s)	78, 100, 116, 486, 814, 1675, 2224, 2490
HapII	CCGG	4 cut(s)	117, 139, 1886, 2330
HgaI	GACGC	1 cut(s)	2508
HhaI	GCGC	3 cut(s)	44, 789, 1931
Hin1I	GRCGYC	1 cut(s)	787
Hin6I	GCGC	3 cut(s)	42, 787, 1929
HinP1I	GCGC	3 cut(s)	42, 787, 1929
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HindIII	AAGCTT	3 cut(s)	267, 323, 1322
HinfI	GANTC	6 cut(s)	182, 566, 1054, 1461, 1771, 2183
HpaII	CCGG	4 cut(s)	117, 139, 1886, 2330
HphI	GGTGA	2 cut(s)	191, 226
Hpy166II	GTNNAC	6 cut(s)	520, 903, 1024, 2142, 2449, 2473
Hpy188I	TCNGA	5 cut(s)	112, 877, 909, 1051, 1438
Hpy8I	GTNNAC	6 cut(s)	520, 903, 1024, 2142, 2449, 2473
HpyAV	CCTTC	6 cut(s)	26, 497, 728, 1093, 1177, 1439
HpyCH4III	ACNGT	6 cut(s)	319, 842, 900, 1741, 1903, 2022
HpyCH4IV	ACGT	3 cut(s)	1020, 1967, 2290
HpyF3I	CTNAG	9 cut(s)	228, 809, 1050, 1122, 1221, 1235, 2003, 2154, 2219
HpySE526I	ACGT	3 cut(s)	1020, 1967, 2290
Hsp92I	GRCGYC	1 cut(s)	787
HspAI	GCGC	3 cut(s)	42, 787, 1929
KasI	GGCGCC	1 cut(s)	786
Kpn2I	TCCGGA	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	7 cut(s)	102, 237, 1545, 1555, 1978, 2193, 2425
LmnI	GCTCC	2 cut(s)	798, 965
Lsp1109I	GCAGC	8 cut(s)	60, 646, 674, 1090, 1625, 1882, 1939, 2363
MaeI	CTAG	5 cut(s)	1529, 1862, 2135, 2270, 2524
MaeII	ACGT	3 cut(s)	1020, 1967, 2290
MaeIII	GTNAC	3 cut(s)	385, 769, 1563
MalI	GATC	7 cut(s)	104, 239, 1547, 1557, 1980, 2195, 2427
MboI	GATC	7 cut(s)	102, 237, 1545, 1555, 1978, 2193, 2425
MfeI	CAATTG	1 cut(s)	1197
MflI	RGATCY	1 cut(s)	1555
MhlI	GDGCHC	3 cut(s)	618, 2144, 2314
Mly113I	GGCGCC	1 cut(s)	787
MlyI	GAGTC	2 cut(s)	191, 1063
MmeI	TCCRAC	1 cut(s)	1473
Mph1103I	ATGCAT	4 cut(s)	6, 553, 1115, 1590
MroI	TCCGGA	1 cut(s)	138
MseI	TTAA	4 cut(s)	89, 918, 1596, 1791
MslI	CAYNNNNRTG	1 cut(s)	1309
MspA1I	CMGCKG	2 cut(s)	1309, 1616
MspI	CCGG	4 cut(s)	117, 139, 1886, 2330
MspR9I	CCNGG	5 cut(s)	118, 170, 1403, 2277, 2330
MunI	CAATTG	1 cut(s)	1197
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	3 cut(s)	170, 1403, 2277
MvnI	CGCG	1 cut(s)	42
NarI	GGCGCC	1 cut(s)	787
NciI	CCSGG	2 cut(s)	118, 2330
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	7 cut(s)	102, 237, 1545, 1555, 1978, 2193, 2425
NlaIV	GGNNCC	5 cut(s)	109, 788, 806, 1807, 2092
NmuCI	GTSAC	1 cut(s)	1563
NsbI	TGCGCA	1 cut(s)	1930
NsiI	ATGCAT	4 cut(s)	6, 553, 1115, 1590
NspI	RCATGY	6 cut(s)	48, 757, 1070, 1724, 2285, 2390
OliI	CACNNNNGTG	1 cut(s)	1309
PaeI	GCATGC	3 cut(s)	48, 1070, 2285
PaeR7I	CTCGAG	1 cut(s)	1551
PagI	TCATGA	2 cut(s)	667, 1971
PceI	AGGCCT	4 cut(s)	486, 1675, 2224, 2490
PciI	ACATGT	1 cut(s)	1720
PctI	GAATGC	1 cut(s)	545
PfeI	GAWTC	4 cut(s)	566, 1461, 1771, 2183
PfoI	TCCNGGA	1 cut(s)	2328
PkrI	GCNGC	9 cut(s)	50, 545, 661, 664, 1105, 1615, 1897, 1954, 2353
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	2 cut(s)	190, 1062
PluTI	GGCGCC	1 cut(s)	790
PmaCI	CACGTG	1 cut(s)	1021
PmlI	CACGTG	1 cut(s)	1021
PpsI	GAGTC	2 cut(s)	190, 1062
Ppu21I	YACGTR	2 cut(s)	1021, 2291
PscI	ACATGT	1 cut(s)	1720
PshBI	ATTAAT	1 cut(s)	1791
Psp124BI	GAGCTC	1 cut(s)	618
Psp1406I	AACGTT	1 cut(s)	1967
Psp6I	CCWGG	3 cut(s)	168, 1401, 2275
PspCI	CACGTG	1 cut(s)	1021
PspFI	CCCAGC	1 cut(s)	704
PspGI	CCWGG	3 cut(s)	168, 1401, 2275
PspN4I	GGNNCC	5 cut(s)	109, 788, 806, 1807, 2092
PspPI	GGNCC	2 cut(s)	77, 1805
PsrI	GAACNNNNNNTAC	2 cut(s)	1140, 1172
PstI	CTGCAG	2 cut(s)	664, 1957
PstNI	CAGNNNCTG	1 cut(s)	1895
PsuI	RGATCY	1 cut(s)	1555
PvuI	CGATCG	1 cut(s)	105
PvuII	CAGCTG	2 cut(s)	1309, 1616
RsaI	GTAC	7 cut(s)	475, 970, 976, 1076, 1219, 1474, 2056
RsaNI	GTAC	7 cut(s)	474, 969, 975, 1075, 1218, 1473, 2055
RseI	CAYNNNNRTG	1 cut(s)	1309
SacI	GAGCTC	1 cut(s)	618
SaqAI	TTAA	4 cut(s)	89, 918, 1596, 1791
SatI	GCNGC	9 cut(s)	49, 544, 660, 663, 1104, 1614, 1896, 1953, 2352
Sau3AI	GATC	7 cut(s)	102, 237, 1545, 1555, 1978, 2193, 2425
Sau96I	GGNCC	2 cut(s)	77, 1805
ScaI	AGTACT	1 cut(s)	976
SchI	GAGTC	2 cut(s)	191, 1063
ScrFI	CCNGG	5 cut(s)	118, 170, 1403, 2277, 2330
SduI	GDGCHC	3 cut(s)	618, 2144, 2314
SfcI	CTRYAG	2 cut(s)	660, 1953
SfoI	GGCGCC	1 cut(s)	788
Sfr274I	CTCGAG	1 cut(s)	1551
SinI	GGWCC	1 cut(s)	1805
SlaI	CTCGAG	1 cut(s)	1551
SmiMI	CAYNNNNRTG	1 cut(s)	1309
SmlI	CTYRAG	4 cut(s)	72, 793, 938, 1551
SmoI	CTYRAG	4 cut(s)	72, 793, 938, 1551
SnaBI	TACGTA	1 cut(s)	2291
SphI	GCATGC	3 cut(s)	48, 1070, 2285
SseBI	AGGCCT	4 cut(s)	486, 1675, 2224, 2490
SsiI	CCGC	3 cut(s)	40, 80, 543
SspDI	GGCGCC	1 cut(s)	786
SspI	AATATT	1 cut(s)	1923
SspMI	CTAG	5 cut(s)	1529, 1862, 2135, 2270, 2524
SstI	GAGCTC	1 cut(s)	618
StuI	AGGCCT	4 cut(s)	486, 1675, 2224, 2490
StyD4I	CCNGG	5 cut(s)	116, 168, 1401, 2275, 2328
TaaI	ACNGT	6 cut(s)	319, 842, 900, 1741, 1903, 2022
TaiI	ACGT	3 cut(s)	1023, 1970, 2293
TaqI	TCGA	4 cut(s)	382, 564, 1552, 2391
TatI	WGTACW	2 cut(s)	974, 1217
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	4 cut(s)	566, 1461, 1771, 2183
Tru1I	TTAA	4 cut(s)	89, 918, 1596, 1791
Tru9I	TTAA	4 cut(s)	89, 918, 1596, 1791
TscAI	CASTG	4 cut(s)	240, 484, 1650, 1807
TseFI	GTSAC	1 cut(s)	1563
TseI	GCWGC	8 cut(s)	48, 659, 662, 1103, 1613, 1895, 1952, 2351
Tsp45I	GTSAC	1 cut(s)	1563
TspGWI	ACGGA	2 cut(s)	952, 1703
TspRI	CASTG	4 cut(s)	240, 484, 1650, 1807
VneI	GTGCAC	1 cut(s)	2140
VpaK11BI	GGWCC	1 cut(s)	1805
VspI	ATTAAT	1 cut(s)	1791
XapI	RAATTY	8 cut(s)	423, 831, 944, 1081, 1262, 1606, 2042, 2410
XceI	RCATGY	6 cut(s)	48, 757, 1070, 1724, 2285, 2390
XcmI	CCANNNNNNNNNTGG	2 cut(s)	716, 2101
XhoI	CTCGAG	1 cut(s)	1551
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	5 cut(s)	1529, 1862, 2135, 2270, 2524
ZrmI	AGTACT	1 cut(s)	976
Zsp2I	ATGCAT	4 cut(s)	6, 553, 1115, 1590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.