Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004516.1

Orthogroup ID

OG0002530

Physical Location & Seq

Genomic Coordinates Forward (+)

31048 .. 33335

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004516.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggaggaggaaatggacgaaaccgaagctctacctcaggtcattttttccatttctgtcccttccgttctggtttgcctggaaatcgtagctgagcgtaagagtctattcgatattcgccaacttcacgtgatggaagtttgggaagatggcagcatggacttccccctaattgatatggtgaaatatcaagctaagccactgatcatctacacaagcacaaaaagcgaggaagctttcttgtctgctttacaacgaaatgatggaacaacagaggcttttactgtgaagcttgtgaaaagttcagtatttagctatgagcaagcatggcatagattgatataccttcgagtaacaggaatggatgatgggttagacatcaaggagagaatttgttatttgaattctatgatggacatgggaagtgatgttcaagttcgtaccagtggaggccttcttgccatattagagaatgaaaggattgtagacacccttgaacaaatggaatgcggcaatgcatctattgcaattgattctgttatagaagtttcattgtatctttttatgtgtctttctcatgaggcgttgcagatattccaaacagataagcatcctagccatatgggcattggtagagcaaaagaagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000710 GO:0000712 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0010777 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

216

Amino Acids

24.44

Weight (kDa)

4.58

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20475 AT3G20475 AT3G20475
fragaria_vesca	FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000
malus_domestica	MD11G1214700.v1.1
prunus_persica	Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0040391 RchiOBHm_Chr5g0040451
rosa_laevigata	RLG00000033976
rosa_multiflora	Rmu_sc0004516.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040210 Rroxscaffold_1G00040250 Rroxscaffold_1G00040300 Rroxscaffold_1G00040940
rosa_rugosa	Rorug05G0184700
rosa_samantha	Rh5AG272000 Rh5BG275900 Rh5CG308000 Rh5DG284100
rosa_wichuraiana	Rw5G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	1 cut(s)	510
AcsI	RAATTY	2 cut(s)	390, 403
AcvI	CACGTG	1 cut(s)	130
AfaI	GTAC	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	403, 434, 497
AjnI	CCWGG	1 cut(s)	78
AloI	GAACNNNNNNTCC	2 cut(s)	414, 446
AluBI	AGCT	6 cut(s)	29, 92, 194, 236, 292, 315
AluI	AGCT	6 cut(s)	29, 92, 194, 236, 292, 315
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	390, 403
AsuHPI	GGTGA	1 cut(s)	193
AxyI	CCTNAGG	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	5 cut(s)	127, 143, 257, 362, 406
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	1 cut(s)	615
BglI	GCCNNNNNGGC	1 cut(s)	624
BisI	GCNGC	2 cut(s)	154, 511
BlpI	GCTNAGC	2 cut(s)	93, 195
BlsI	GCNGC	2 cut(s)	155, 512
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	527, 619
Bpu1102I	GCTNAGC	2 cut(s)	93, 195
BsaAI	YACGTR	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	609
Bse1I	ACTGG	1 cut(s)	444
Bse21I	CCTNAGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	80
BseGI	GGATG	2 cut(s)	370, 610
BseJI	GATNNNNATC	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	2 cut(s)	50, 84
BseNI	ACTGG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	204
Bsp1720I	GCTNAGC	2 cut(s)	93, 195
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	2 cut(s)	49, 85
BspHI	TCATGA	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	444
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	3 cut(s)	36, 93, 195
BstF5I	GGATG	2 cut(s)	370, 610
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 328, 524, 624
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	370, 610
BtsIMutI	CAGTG	2 cut(s)	200, 451
Cac8I	GCNNGC	1 cut(s)	324
CciI	TCATGA	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	4 cut(s)	157, 327, 418, 578
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	3 cut(s)	36, 93, 195
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	453
Eco72I	CACGTG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	520
FaeI	CATG	4 cut(s)	160, 330, 421, 581
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	4 cut(s)	156, 326, 417, 577
FauNDI	CATATG	1 cut(s)	621
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	154, 511
FokI	GGATG	2 cut(s)	377, 597
Fsp4HI	GCNGC	2 cut(s)	154, 511
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	2 cut(s)	154, 511
HaeIII	GGCC	1 cut(s)	453
Hin1II	CATG	4 cut(s)	160, 330, 421, 581
HindIII	AAGCTT	2 cut(s)	234, 290
HinfI	GANTC	2 cut(s)	103, 533
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	4 cut(s)	72, 356, 464, 638
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	518, 527, 589
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 328, 524, 624
HpyF3I	CTNAG	3 cut(s)	36, 93, 195
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	160, 330, 421, 581
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	6 cut(s)	23, 56, 65, 92, 342, 457
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	527, 619
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	528
MluCI	AATT	4 cut(s)	171, 390, 403, 528
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	45, 223, 268, 443, 574
Mph1103I	ATGCAT	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	225, 328, 524, 624
NdeI	CATATG	1 cut(s)	621
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	4 cut(s)	160, 330, 421, 581
NsiI	ATGCAT	1 cut(s)	520
PagI	TCATGA	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	453
PctI	GAATGC	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	155, 512
PleI	GAGTC	1 cut(s)	111
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	111
Ppu21I	YACGTR	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	78
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SatI	GCNGC	2 cut(s)	154, 511
Sau3AI	GATC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	527, 619
Sse9I	AATT	4 cut(s)	171, 390, 403, 528
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	1 cut(s)	615
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	111, 349
TasI	AATT	4 cut(s)	171, 390, 403, 528
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	533
TscAI	CASTG	2 cut(s)	207, 451
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	489, 540
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	207, 451
XapI	RAATTY	2 cut(s)	390, 403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	1 cut(s)	615
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.