Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002530

Physical Location & Seq

Genomic Coordinates Reverse (-)

34916181 .. 34926927

Gene Structure 10747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033976

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

ATGGAGGAGGAAATGGACGAAAACGAAGCTCTACCTCAGGTGTACATGGCATGCATTCGACAAGGTCATCGAGTGGGAGTTTCTTATTATGATTCCAGTATTCGCCAACTTCACGTGATGGAAGTTTGGGAAGATGGCAGCATGGACTTCCCGCTAATTGATATGGTGAAATATCAAGCTAAGCCACTGATCATCTACACAAGCACAAAAAGCGAGGAAGCTTTCTTGTCTGCTTTACAACGAAGTGATGGAACAACAGAGGCTTTTACTGTGAAGCTTGTGAAAAGTTCAGTATTTAGCTATGAGCAAGCATGGCACAGATTGATATACCTTCGAGTAACAGGAATGAATGATGGGTTAGACATCAAGGAGAGAATTTGTTATTTGAGTTCTATGATGGACTTGGGAAGTGATGTTCAAGTTCGTACCAGTGGAGGCCTTCTTGCCATATTAGAGAATGAAAGGATTGTAGACACACTTGAACAACTGGAATGCGGCAATGCATCTATTGCAATCGATTCTGTTATAGAAGTCTCATTAAACAAGTTTCTAAAACTTGATGCTGCAGCTCATGAGGCGTTGCAGATATTCCAAACAGATAAGCATCCTAGCCATATGGGCATTGGTAGAGCAAAAGAAGGGTTTTCTGTATTTGGCATGTTGAATAAGTGTGTAACTCCTATTGGGAGGCGCCTCTTGAGGAACTGGTTCCTAAGGCCAATAATTGACCTTGAAATTTTGAACAGTCGTCTTGATACCATATCATTCTTTATATCTTCAGAAGAACTAATTATGTCTTTACGGTCAACTCTGAAATCTGTTAAGGATATTCCTCACATACTCAAGAAATTCAACTCCCCAAGCTCTGTATGTACCAGTACCGATTGGACAGCTTTTTTAAAGAGTGTTTGCTCACTCTTGCACATGAACAAGGTATTTGAAGTGGGTGTTTCTGAGAGTCTTCAAGAGCATGCCAAGTACCAGAATTTGGACATTGTTGAGAAGGTAATTGGTGTTCTTGATGTAAACAGAAGTAAAGAGAAGGGATATGAGACAATTGTAAAAGATGATTTCTGCACTGAGTTAGATGAGCTGAGGCAAATATATGAGGAATTGCCCGAATTTCTGGAAGAGGTTTCAAAGATGGAACTTGGAAGACTTCCTCAGCTGTGCAAAGACAAACTTGTTCCTTGTATCGTGTATATACACCAGATAGGATACTTGATGTGCATTTTTGAAGAAAAACTTGATGAAGCTACCCTGGAGACACTTCAAGATTTTGAGTTTGCTTTCTCTGATGCAGAAGGAGAAACAAAAAGATTCTTTTATCGTAATCCAAAGACACGAGAGTTGGATAATCTTCTGGGAGATATTTATCACAAAATACTAGATATGGAGAGGGCGATCACTCGAGATCTGGTGTCACATATACTTCTATTTTCAACGCATCTGCTTAAAGCTGTAAATTTTGCAGCTGAACTTGATTGCTTTTTGTCATTGGCGCTGGTTGCCCGTCAAAACAATTATGTAAGGCCTACTTTGACCACGGACTGCTTGCTTGATATACAAAATGGAAGACATGTTTTGCAGGAAATGACGGTAGACACTTTTGTTCCCAATGATACAAAGATTCAAAATGATGGGAGAATTAATATCATCACTGGTCCCAACTATTCAGGGAAAAGCATCTACATAAAGCAGGTAGCTTTGATTGTTTTCCTAGCCCATATAGGAAGTTTTGTTCCAGCAGATGCTGCAACTGTGGGTTTGACTGATAGAATATTCTGCGCAATGGGAAGCAAGCTCATGGCTGCAGAACAATCAACATTCATGATTGATCTGCATCAAGTAGGGATGATGCTAAGGCAGGCAACTTCACGGTCTTTGTGTCTCTTGGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGCGTTGGTCTGCTTGGTGGAACCATAAACTACTTGGTGTCCTATGATGAACCCCCAAAGGTTCTAGTGTGCACACATTTGACTGAGTTATTCAGCGAGAGTTGCTTACCTAAATCCAAGAAGATCACATTTTACACTATGAGTGTGCTGAGGCCTGACAACTCGACAGATATTGAGGATATTGTTTTCCTATATAGGCTAGTTCCTGGGCATGCACTACGTAGTTATGGTCTGCATTGTGCACTACTTGCTGGTGTCCCTGAGGAAGTTATCAAGAGAGCAGCATTTGTATTGGAAGCTATTGGAAATAATCAGCATGTCGAGCGATTGTGCAATGAAAATTTATCAGTTCAGGATCAGCAATACCAGACAGTAGTGGACAAAATAAAAGCACCAGAGGTAACTTTGCCAGTATGTCGTTGTGAACTCAGAAGGTTGCCAGTCGGTCTGGATGGCAATGCGCAAGGCATTATCTCCATCATCAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000710 GO:0000712 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0010777 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

807

Amino Acids

90.89

Weight (kDa)

5.22

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_III	PF05192	190 - 501	1.1e-31	MutS domain III
MutS_V	PF00488	552 - 743	9.9e-49	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20475 AT3G20475 AT3G20475
fragaria_vesca	FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000
malus_domestica	MD11G1214700.v1.1
prunus_persica	Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0040391 RchiOBHm_Chr5g0040451
rosa_laevigata	RLG00000033976
rosa_multiflora	Rmu_sc0004516.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040210 Rroxscaffold_1G00040250 Rroxscaffold_1G00040300 Rroxscaffold_1G00040940
rosa_rugosa	Rorug05G0184700
rosa_samantha	Rh5AG272000 Rh5BG275900 Rh5CG308000 Rh5DG284100
rosa_wichuraiana	Rw5G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1789, 2391
Acc36I	ACCTGC	1 cut(s)	1690
AccB1I	GGYRCC	1 cut(s)	690
AccB7I	CCANNNNNTGG	1 cut(s)	988
AccI	GTMKAC	2 cut(s)	471, 1602
AciI	CCGC	2 cut(s)	152, 495
AclWI	GGATC	1 cut(s)	2292
AcsI	RAATTY	8 cut(s)	375, 735, 848, 985, 1121, 1465, 1901, 2269
AcuI	CTGAAG	1 cut(s)	762
AcvI	CACGTG	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	691
AfaI	GTAC	6 cut(s)	44, 427, 874, 880, 980, 1915
AfiI	CCNNNNNNNGG	1 cut(s)	988
AflIII	ACRYGT	1 cut(s)	1579
AjnI	CCWGG	2 cut(s)	1260, 2134
AjuI	GAANNNNNNNTTGG	2 cut(s)	1917, 1949
AloI	GAACNNNNNNTCC	4 cut(s)	399, 431, 1725, 1757
Alw21I	GWGCWC	2 cut(s)	2003, 2173
Alw26I	GTCTC	4 cut(s)	538, 1046, 1259, 1895
Alw44I	GTGCAC	2 cut(s)	1999, 2169
AlwI	GGATC	1 cut(s)	2292
AlwNI	CAGNNNCTG	1 cut(s)	1754
Ama87I	CYCGRG	1 cut(s)	1410
AoxI	GGCC	4 cut(s)	436, 716, 1532, 2081
ApaLI	GTGCAC	2 cut(s)	1999, 2169
ApeKI	GCWGC	7 cut(s)	138, 563, 566, 1472, 1754, 1811, 2210
ApoI	RAATTY	8 cut(s)	375, 735, 848, 985, 1121, 1465, 1901, 2269
AseI	ATTAAT	1 cut(s)	1650
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	4 cut(s)	693, 1504, 1790, 2392
AspS9I	GGNCC	1 cut(s)	1664
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	1410
AvaII	GGWCC	1 cut(s)	1664
AxyI	CCTNAGG	3 cut(s)	36, 713, 2190
BaeGI	GKGCMC	2 cut(s)	2003, 2173
BanI	GGYRCC	1 cut(s)	690
BauI	CACGAG	1 cut(s)	1344
BbrPI	CACGTG	1 cut(s)	115
BbsI	GAAGAC	3 cut(s)	953, 1162, 1582
Bbv12I	GWGCWC	2 cut(s)	2003, 2173
BbvCI	CCTCAGC	3 cut(s)	1094, 1164, 2078
BbvI	GCAGC	7 cut(s)	150, 550, 578, 1484, 1741, 1798, 2222
BciT130I	CCWGG	2 cut(s)	1262, 2136
BciVI	GTATCC	1 cut(s)	1211
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	4 cut(s)	538, 1046, 1259, 1895
BfaI	CTAG	5 cut(s)	609, 1388, 1721, 1994, 2129
BfmI	CTRYAG	2 cut(s)	564, 1812
BfoI	RGCGCY	2 cut(s)	694, 1505
BfuAI	ACCTGC	1 cut(s)	1690
BfuI	GTATCC	1 cut(s)	1211
BglI	GCCNNNNNGGC	1 cut(s)	618
BglII	AGATCT	1 cut(s)	1414
BisI	GCNGC	8 cut(s)	139, 496, 564, 567, 1473, 1755, 1812, 2211
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	8 cut(s)	140, 497, 565, 568, 1474, 1756, 1813, 2212
Bme1390I	CCNGG	2 cut(s)	1262, 2136
Bme18I	GGWCC	1 cut(s)	1664
BmeT110I	CYCGRG	1 cut(s)	1410
BmgT120I	GGNCC	1 cut(s)	1664
BmiI	GGNNCC	4 cut(s)	692, 710, 1666, 1951
BmrFI	CCNGG	2 cut(s)	1262, 2136
BmsI	GCATC	9 cut(s)	512, 550, 613, 1288, 1456, 1695, 1741, 1848, 1852
BpiI	GAAGAC	3 cut(s)	953, 1162, 1582
BpmI	CTGGAG	1 cut(s)	1283
Bpu10I	CCTNAGC	4 cut(s)	1094, 1164, 1862, 2078
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	718, 827
Bsa29I	ATCGAT	1 cut(s)	516
BsaAI	YACGTR	2 cut(s)	115, 2150
BsaBI	GATNNNNATC	3 cut(s)	603, 1374, 1842
BsaHI	GRCGYC	1 cut(s)	691
BsaJI	CCNNGG	3 cut(s)	1260, 1545, 2135
Bsc4I	CCNNNNNNNGG	1 cut(s)	988
Bse1I	ACTGG	8 cut(s)	96, 429, 492, 710, 876, 1666, 2339, 2369
Bse21I	CCTNAGG	3 cut(s)	36, 713, 2190
Bse3DI	GCAATG	4 cut(s)	505, 1797, 2269, 2392
Bse8I	GATNNNNATC	3 cut(s)	603, 1374, 1842
BseBI	CCWGG	2 cut(s)	1262, 2136
BseCI	ATCGAT	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	1260, 1545, 2135
BseGI	GGATG	4 cut(s)	604, 1860, 1903, 2386
BseJI	GATNNNNATC	3 cut(s)	603, 1374, 1842
BseLI	CCNNNNNNNGG	1 cut(s)	988
BseMI	GCAATG	4 cut(s)	505, 1797, 2269, 2392
BseMII	CTCAG	9 cut(s)	50, 945, 1071, 1085, 1178, 2004, 2069, 2181, 2371
BseNI	ACTGG	8 cut(s)	96, 429, 492, 710, 876, 1666, 2339, 2369
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	2 cut(s)	2003, 2173
BseXI	GCAGC	7 cut(s)	150, 550, 578, 1484, 1741, 1798, 2222
BsgI	GTGCAG	1 cut(s)	1060
BshFI	GGCC	4 cut(s)	438, 718, 1534, 2083
BshNI	GGYRCC	1 cut(s)	690
BshVI	ATCGAT	1 cut(s)	516
BsiHKAI	GWGCWC	2 cut(s)	2003, 2173
BsiHKCI	CYCGRG	1 cut(s)	1410
BslFI	GGGAC	2 cut(s)	1650, 2171
BslI	CCNNNNNNNGG	1 cut(s)	988
BsmAI	GTCTC	4 cut(s)	538, 1046, 1259, 1895
BsmFI	GGGAC	2 cut(s)	1650, 2171
BsmI	GAATGC	2 cut(s)	54, 497
BsnI	GGCC	4 cut(s)	438, 718, 1534, 2083
BsoBI	CYCGRG	1 cut(s)	1410
Bsp1286I	GDGCHC	2 cut(s)	2003, 2173
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	6 cut(s)	189, 1404, 1414, 1837, 2052, 2284
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	2 cut(s)	152, 495
BspANI	GGCC	4 cut(s)	438, 718, 1534, 2083
BspCNI	CTCAG	9 cut(s)	49, 946, 1072, 1086, 1177, 2005, 2070, 2182, 2370
BspDI	ATCGAT	1 cut(s)	516
BspHI	TCATGA	2 cut(s)	571, 1830
BspLI	GGNNCC	4 cut(s)	692, 710, 1666, 1951
BspMAI	CTGCAG	2 cut(s)	568, 1816
BspMI	ACCTGC	1 cut(s)	1690
BspPI	GGATC	1 cut(s)	2292
BspT107I	GGYRCC	1 cut(s)	690
BsrDI	GCAATG	4 cut(s)	505, 1797, 2269, 2392
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	8 cut(s)	96, 429, 492, 710, 876, 1666, 2339, 2369
BssECI	CCNNGG	3 cut(s)	1260, 1545, 2135
BssMI	GATC	6 cut(s)	189, 1404, 1414, 1837, 2052, 2284
BssNI	GRCGYC	1 cut(s)	691
BssSI	CACGAG	1 cut(s)	1344
Bst2BI	CACGAG	1 cut(s)	1344
Bst2UI	CCWGG	2 cut(s)	1262, 2136
Bst4CI	ACNGT	7 cut(s)	271, 746, 804, 1600, 1762, 1881, 2302
Bst6I	CTCTTC	1 cut(s)	1125
BstACI	GRCGYC	1 cut(s)	691
BstAPI	GCANNNNNTGC	3 cut(s)	509, 1754, 2177
BstAUI	TGTACA	1 cut(s)	42
BstBAI	YACGTR	2 cut(s)	115, 2150
BstC8I	GCNNGC	7 cut(s)	52, 309, 972, 1556, 1802, 1869, 2142
BstDSI	CCRYGG	1 cut(s)	1545
BstF5I	GGATG	4 cut(s)	604, 1860, 1903, 2386
BstH2I	RGCGCY	2 cut(s)	694, 1505
BstHHI	GCGC	4 cut(s)	693, 1504, 1790, 2392
BstKTI	GATC	6 cut(s)	192, 1407, 1417, 1840, 2055, 2287
BstMAI	GTCTC	4 cut(s)	538, 1046, 1259, 1895
BstMBI	GATC	6 cut(s)	189, 1404, 1414, 1837, 2052, 2284
BstNI	CCWGG	2 cut(s)	1262, 2136
BstNSI	RCATGY	6 cut(s)	54, 661, 974, 1583, 2144, 2249
BstSCI	CCNGG	2 cut(s)	1260, 2134
BstSFI	CTRYAG	2 cut(s)	564, 1812
BstSLI	GKGCMC	2 cut(s)	2003, 2173
BstSNI	TACGTA	1 cut(s)	2150
BstV1I	GCAGC	7 cut(s)	150, 550, 578, 1484, 1741, 1798, 2222
BstV2I	GAAGAC	3 cut(s)	953, 1162, 1582
BstX2I	RGATCY	1 cut(s)	1414
BstYI	RGATCY	1 cut(s)	1414
Bsu15I	ATCGAT	1 cut(s)	516
Bsu36I	CCTNAGG	3 cut(s)	36, 713, 2190
BsuI	GTATCC	1 cut(s)	1211
BsuRI	GGCC	4 cut(s)	438, 718, 1534, 2083
BsuTUI	ATCGAT	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	1545
BtsCI	GGATG	4 cut(s)	604, 1860, 1903, 2386
BtsIMutI	CAGTG	5 cut(s)	185, 436, 1077, 1659, 2419
BveI	ACCTGC	1 cut(s)	1690
Cac8I	GCNNGC	7 cut(s)	52, 309, 972, 1556, 1802, 1869, 2142
CaiI	CAGNNNCTG	1 cut(s)	1754
CciI	TCATGA	2 cut(s)	571, 1830
CfoI	GCGC	4 cut(s)	693, 1504, 1790, 2392
Cfr13I	GGNCC	1 cut(s)	1664
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	6 cut(s)	43, 426, 873, 879, 979, 1914
CviQI	GTAC	6 cut(s)	43, 426, 873, 879, 979, 1914
DinI	GGCGCC	1 cut(s)	692
DpnI	GATC	6 cut(s)	191, 1406, 1416, 1839, 2054, 2286
DpnII	GATC	6 cut(s)	189, 1404, 1414, 1837, 2052, 2284
DraI	TTTAAA	1 cut(s)	900
Eam1104I	CTCTTC	1 cut(s)	1125
EarI	CTCTTC	1 cut(s)	1125
Eco105I	TACGTA	1 cut(s)	2150
Eco147I	AGGCCT	3 cut(s)	438, 1534, 2083
Eco47I	GGWCC	1 cut(s)	1664
Eco57I	CTGAAG	1 cut(s)	762
Eco72I	CACGTG	1 cut(s)	115
Eco81I	CCTNAGG	3 cut(s)	36, 713, 2190
Eco88I	CYCGRG	1 cut(s)	1410
EcoRII	CCWGG	2 cut(s)	1260, 2134
EcoT22I	ATGCAT	2 cut(s)	56, 505
EgeI	GGCGCC	1 cut(s)	692
EheI	GGCGCC	1 cut(s)	692
FalI	AAGNNNNNCTT	8 cut(s)	1167, 1199, 1230, 1262, 1522, 1554, 1902, 1934
FaqI	GGGAC	2 cut(s)	1650, 2171
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	615
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	2 cut(s)	471, 1602
Fnu4HI	GCNGC	8 cut(s)	139, 496, 564, 567, 1473, 1755, 1812, 2211
FokI	GGATG	4 cut(s)	591, 1867, 1910, 2393
Fsp4HI	GCNGC	8 cut(s)	139, 496, 564, 567, 1473, 1755, 1812, 2211
FspBI	CTAG	5 cut(s)	609, 1388, 1721, 1994, 2129
FspI	TGCGCA	2 cut(s)	1789, 2391
GlaI	GCGC	4 cut(s)	692, 1503, 1789, 2391
GluI	GCNGC	8 cut(s)	139, 496, 564, 567, 1473, 1755, 1812, 2211
GsuI	CTGGAG	1 cut(s)	1283
HaeII	RGCGCY	2 cut(s)	694, 1505
HaeIII	GGCC	4 cut(s)	438, 718, 1534, 2083
HhaI	GCGC	4 cut(s)	693, 1504, 1790, 2392
Hin1I	GRCGYC	1 cut(s)	691
Hin6I	GCGC	4 cut(s)	691, 1502, 1788, 2390
HinP1I	GCGC	4 cut(s)	691, 1502, 1788, 2390
HincII	GTYRAC	1 cut(s)	807
HindII	GTYRAC	1 cut(s)	807
HindIII	AAGCTT	2 cut(s)	219, 275
HinfI	GANTC	5 cut(s)	92, 518, 958, 1320, 1630
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	9 cut(s)	43, 472, 807, 1027, 1603, 2001, 2171, 2308, 2354
Hpy188I	TCNGA	5 cut(s)	781, 813, 955, 1297, 2360
Hpy8I	GTNNAC	9 cut(s)	43, 472, 807, 1027, 1603, 2001, 2171, 2308, 2354
HpyAV	CCTTC	7 cut(s)	341, 449, 632, 997, 1036, 1298, 2355
HpyCH4III	ACNGT	7 cut(s)	271, 746, 804, 1600, 1762, 1881, 2302
HpyCH4IV	ACGT	2 cut(s)	114, 2149
HpySE526I	ACGT	2 cut(s)	114, 2149
Hsp92I	GRCGYC	1 cut(s)	691
HspAI	GCGC	4 cut(s)	691, 1502, 1788, 2390
KasI	GGCGCC	1 cut(s)	690
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	6 cut(s)	189, 1404, 1414, 1837, 2052, 2284
Lsp1109I	GCAGC	7 cut(s)	150, 550, 578, 1484, 1741, 1798, 2222
LweI	GCATC	9 cut(s)	512, 550, 613, 1288, 1456, 1695, 1741, 1848, 1852
MaeI	CTAG	5 cut(s)	609, 1388, 1721, 1994, 2129
MaeII	ACGT	2 cut(s)	114, 2149
MaeIII	GTNAC	4 cut(s)	337, 673, 1422, 2329
MalI	GATC	6 cut(s)	191, 1406, 1416, 1839, 2054, 2286
MboI	GATC	6 cut(s)	189, 1404, 1414, 1837, 2052, 2284
MfeI	CAATTG	1 cut(s)	1056
MflI	RGATCY	1 cut(s)	1414
MhlI	GDGCHC	2 cut(s)	2003, 2173
Mly113I	GGCGCC	1 cut(s)	691
MlyI	GAGTC	1 cut(s)	967
MmeI	TCCRAC	1 cut(s)	1332
Mph1103I	ATGCAT	2 cut(s)	56, 505
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	5 cut(s)	539, 822, 899, 1455, 1650
MspA1I	CMGCKG	2 cut(s)	1168, 1475
MspR9I	CCNGG	2 cut(s)	1262, 2136
MunI	CAATTG	1 cut(s)	1056
Mva1269I	GAATGC	2 cut(s)	54, 497
MvaI	CCWGG	2 cut(s)	1262, 2136
NarI	GGCGCC	1 cut(s)	691
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	6 cut(s)	189, 1404, 1414, 1837, 2052, 2284
NlaIV	GGNNCC	4 cut(s)	692, 710, 1666, 1951
NmuCI	GTSAC	1 cut(s)	1422
NsbI	TGCGCA	2 cut(s)	1789, 2391
NsiI	ATGCAT	2 cut(s)	56, 505
NspI	RCATGY	6 cut(s)	54, 661, 974, 1583, 2144, 2249
PaeI	GCATGC	3 cut(s)	54, 974, 2144
PaeR7I	CTCGAG	1 cut(s)	1410
PagI	TCATGA	2 cut(s)	571, 1830
PceI	AGGCCT	3 cut(s)	438, 1534, 2083
PciI	ACATGT	1 cut(s)	1579
PctI	GAATGC	2 cut(s)	54, 497
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	4 cut(s)	92, 518, 1320, 1630
PflFI	GACNNNGTC	1 cut(s)	63
PflMI	CCANNNNNTGG	1 cut(s)	988
PkrI	GCNGC	8 cut(s)	140, 497, 565, 568, 1474, 1756, 1813, 2212
PleI	GAGTC	1 cut(s)	966
PluTI	GGCGCC	1 cut(s)	694
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	966
Ppu21I	YACGTR	2 cut(s)	115, 2150
PscI	ACATGT	1 cut(s)	1579
PshBI	ATTAAT	1 cut(s)	1650
Psp6I	CCWGG	2 cut(s)	1260, 2134
PspCI	CACGTG	1 cut(s)	115
PspGI	CCWGG	2 cut(s)	1260, 2134
PspN4I	GGNNCC	4 cut(s)	692, 710, 1666, 1951
PspPI	GGNCC	1 cut(s)	1664
PsrI	GAACNNNNNNTAC	2 cut(s)	999, 1031
PstI	CTGCAG	2 cut(s)	568, 1816
PstNI	CAGNNNCTG	1 cut(s)	1754
PsuI	RGATCY	1 cut(s)	1414
PsyI	GACNNNGTC	1 cut(s)	63
PvuII	CAGCTG	2 cut(s)	1168, 1475
RsaI	GTAC	6 cut(s)	44, 427, 874, 880, 980, 1915
RsaNI	GTAC	6 cut(s)	43, 426, 873, 879, 979, 1914
SaqAI	TTAA	5 cut(s)	539, 822, 899, 1455, 1650
SatI	GCNGC	8 cut(s)	139, 496, 564, 567, 1473, 1755, 1812, 2211
Sau3AI	GATC	6 cut(s)	189, 1404, 1414, 1837, 2052, 2284
Sau96I	GGNCC	1 cut(s)	1664
SchI	GAGTC	1 cut(s)	967
ScrFI	CCNGG	2 cut(s)	1262, 2136
SduI	GDGCHC	2 cut(s)	2003, 2173
SfaNI	GCATC	9 cut(s)	512, 550, 613, 1288, 1456, 1695, 1741, 1848, 1852
SfcI	CTRYAG	2 cut(s)	564, 1812
SfoI	GGCGCC	1 cut(s)	692
Sfr274I	CTCGAG	1 cut(s)	1410
SinI	GGWCC	1 cut(s)	1664
SlaI	CTCGAG	1 cut(s)	1410
SmlI	CTYRAG	3 cut(s)	697, 842, 1410
SmoI	CTYRAG	3 cut(s)	697, 842, 1410
SnaBI	TACGTA	1 cut(s)	2150
SphI	GCATGC	3 cut(s)	54, 974, 2144
SseBI	AGGCCT	3 cut(s)	438, 1534, 2083
SsiI	CCGC	2 cut(s)	152, 495
SspDI	GGCGCC	1 cut(s)	690
SspI	AATATT	1 cut(s)	1782
SspMI	CTAG	5 cut(s)	609, 1388, 1721, 1994, 2129
StuI	AGGCCT	3 cut(s)	438, 1534, 2083
StyD4I	CCNGG	2 cut(s)	1260, 2134
TaaI	ACNGT	7 cut(s)	271, 746, 804, 1600, 1762, 1881, 2302
TaiI	ACGT	2 cut(s)	117, 2152
TaqI	TCGA	7 cut(s)	58, 70, 334, 516, 1411, 2093, 2250
TaqII	GACCGA	1 cut(s)	2363
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	4 cut(s)	92, 518, 1320, 1630
Tru1I	TTAA	5 cut(s)	539, 822, 899, 1455, 1650
Tru9I	TTAA	5 cut(s)	539, 822, 899, 1455, 1650
TscAI	CASTG	5 cut(s)	192, 436, 1084, 1666, 2419
TseFI	GTSAC	1 cut(s)	1422
TseI	GCWGC	7 cut(s)	138, 563, 566, 1472, 1754, 1811, 2210
Tsp45I	GTSAC	1 cut(s)	1422
TspDTI	ATGAA	8 cut(s)	362, 474, 941, 1266, 1819, 1914, 1992, 2280
TspGWI	ACGGA	1 cut(s)	1562
TspRI	CASTG	5 cut(s)	192, 436, 1084, 1666, 2419
Tth111I	GACNNNGTC	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	988
VneI	GTGCAC	2 cut(s)	1999, 2169
VpaK11BI	GGWCC	1 cut(s)	1664
VspI	ATTAAT	1 cut(s)	1650
XapI	RAATTY	8 cut(s)	375, 735, 848, 985, 1121, 1465, 1901, 2269
XceI	RCATGY	6 cut(s)	54, 661, 974, 1583, 2144, 2249
XcmI	CCANNNNNNNNNTGG	2 cut(s)	620, 1960
XhoI	CTCGAG	1 cut(s)	1410
XmiI	GTMKAC	2 cut(s)	471, 1602
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	5 cut(s)	609, 1388, 1721, 1994, 2129
Zsp2I	ATGCAT	2 cut(s)	56, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.