Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002530

Physical Location & Seq

Genomic Coordinates Forward (+)

57873553 .. 57875707

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGGAGGAAATGGACGAAACCGAAGCTCTACCTCAGGTCAGTTTTTCCATTTCTGTCCCTTCCGTTCTGGTTTGCCTGGAAATCGCAGCTGAGCATAAGAGTCTAATCGAGTTTGTAGTCCAGGTGTACATGGCATGCATTCGACAAGGTCATCGAGTGGGAGTTTCTTATTATGATTCCAGTATTCGCCAACTTCACGTGATGGAAGTTTGGGAAGATGGCAGCATGGACTTCCCCCTAATTGATATGGTGAAATATCAAGCTAAGCCACTGATCATCTACACAAGCACAAAAAGCGAGGAAGCTTTCTTGTCTGCTTTACAACGAAGTGATGGAACAACAGAGGCTTTTACTGTCAAGCTTGTGAAAAGTTCAGTATTTAGCTATGAGCAAGCATGGCACAGATTGATATACCTTCGACTAACAGGAATGGATGATGGGTTAGACATCAAGGAAAGAATTTGTTATTTGAGTTCTATGATGGACATGGGAAGTGATGTTCAAGTTCGTACCAGTGGAGGTCTTCTTGCCATATTAGAGAATGAAAGGATTGTAGACACACTTGAACAAATGGAATGCGGCAATGCATCTATTGCAATCGATTCTGTTATAGAAGTTTCATTGTATCTTTTTATGTGTCTTTGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000710 GO:0000712 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0010777 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

217

Amino Acids

24.53

Weight (kDa)

4.49

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20475 AT3G20475 AT3G20475
fragaria_vesca	FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000
malus_domestica	MD11G1214700.v1.1
prunus_persica	Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0040391 RchiOBHm_Chr5g0040451
rosa_laevigata	RLG00000033976
rosa_multiflora	Rmu_sc0004516.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040210 Rroxscaffold_1G00040250 Rroxscaffold_1G00040300 Rroxscaffold_1G00040940
rosa_rugosa	Rorug05G0184700
rosa_samantha	Rh5AG272000 Rh5BG275900 Rh5CG308000 Rh5DG284100
rosa_wichuraiana	Rw5G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	558
AciI	CCGC	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	462
AcvI	CACGTG	1 cut(s)	202
AfaI	GTAC	2 cut(s)	131, 514
AgsI	TTSAA	2 cut(s)	506, 569
AjnI	CCWGG	2 cut(s)	78, 123
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
AluBI	AGCT	6 cut(s)	29, 92, 266, 308, 364, 387
AluI	AGCT	6 cut(s)	29, 92, 266, 308, 364, 387
ApeKI	GCWGC	2 cut(s)	89, 225
ApoI	RAATTY	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	518
BbvI	GCAGC	2 cut(s)	101, 237
BccI	CCATC	5 cut(s)	199, 215, 329, 434, 478
BciT130I	CCWGG	2 cut(s)	80, 125
BclI	TGATCA	1 cut(s)	276
BisI	GCNGC	3 cut(s)	90, 226, 583
BlpI	GCTNAGC	2 cut(s)	93, 267
BlsI	GCNGC	3 cut(s)	91, 227, 584
Bme1390I	CCNGG	2 cut(s)	80, 125
BmrFI	CCNGG	2 cut(s)	80, 125
BmsI	GCATC	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	518
Bpu1102I	GCTNAGC	2 cut(s)	93, 267
Bsa29I	ATCGAT	1 cut(s)	603
BsaAI	YACGTR	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	183, 516
Bse21I	CCTNAGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	80, 125
BseCI	ATCGAT	1 cut(s)	603
BseGI	GGATG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	2 cut(s)	50, 84
BseNI	ACTGG	2 cut(s)	183, 516
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	101, 237
BshVI	ATCGAT	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	2 cut(s)	141, 584
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	276
Bsp1720I	GCTNAGC	2 cut(s)	93, 267
BspACI	CCGC	1 cut(s)	582
BspCNI	CTCAG	2 cut(s)	49, 85
BspDI	ATCGAT	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	592
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	183, 516
BssMI	GATC	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	80, 125
Bst4CI	ACNGT	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	139, 396
BstDEI	CTNAG	3 cut(s)	36, 93, 267
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 400, 596
BstNI	CCWGG	2 cut(s)	80, 125
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	78, 123
BstV1I	GCAGC	2 cut(s)	101, 237
BstV2I	GAAGAC	1 cut(s)	518
Bsu15I	ATCGAT	1 cut(s)	603
Bsu36I	CCTNAGG	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	2 cut(s)	272, 523
Cac8I	GCNNGC	2 cut(s)	139, 396
ClaI	ATCGAT	1 cut(s)	603
Csp6I	GTAC	2 cut(s)	130, 513
CviAII	CATG	5 cut(s)	133, 138, 229, 399, 490
CviJI	RGCY	8 cut(s)	29, 92, 266, 271, 308, 350, 364, 387
CviKI_1	RGCY	8 cut(s)	29, 92, 266, 271, 308, 350, 364, 387
CviQI	GTAC	2 cut(s)	130, 513
DdeI	CTNAG	3 cut(s)	36, 93, 267
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eco72I	CACGTG	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	78, 123
EcoT22I	ATGCAT	2 cut(s)	143, 592
FaeI	CATG	5 cut(s)	136, 141, 232, 402, 493
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	5 cut(s)	132, 137, 228, 398, 489
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	90, 226, 583
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	3 cut(s)	90, 226, 583
GluI	GCNGC	3 cut(s)	90, 226, 583
Hin1II	CATG	5 cut(s)	136, 141, 232, 402, 493
HindIII	AAGCTT	2 cut(s)	306, 362
HinfI	GANTC	3 cut(s)	103, 179, 605
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	130, 559
Hpy8I	GTNNAC	2 cut(s)	130, 559
HpyAV	CCTTC	2 cut(s)	72, 428
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	141, 590, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 400, 596
HpyF3I	CTNAG	3 cut(s)	36, 93, 267
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	136, 141, 232, 402, 493
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	9 cut(s)	23, 56, 65, 92, 110, 137, 196, 414, 529
Lsp1109I	GCAGC	2 cut(s)	101, 237
LweI	GCATC	1 cut(s)	599
MaeII	ACGT	1 cut(s)	201
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	2 cut(s)	230, 518
MluCI	AATT	2 cut(s)	243, 462
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	4 cut(s)	45, 295, 340, 515
Mph1103I	ATGCAT	2 cut(s)	143, 592
MspA1I	CMGCKG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	80, 125
Mva1269I	GAATGC	2 cut(s)	141, 584
MvaI	CCWGG	2 cut(s)	80, 125
MwoI	GCNNNNNNNGC	3 cut(s)	297, 400, 596
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	5 cut(s)	136, 141, 232, 402, 493
NsiI	ATGCAT	2 cut(s)	143, 592
NspI	RCATGY	1 cut(s)	141
PaeI	GCATGC	1 cut(s)	141
PctI	GAATGC	2 cut(s)	141, 584
PfeI	GAWTC	2 cut(s)	179, 605
PflFI	GACNNNGTC	1 cut(s)	150
PkrI	GCNGC	3 cut(s)	91, 227, 584
PleI	GAGTC	1 cut(s)	111
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	111
Ppu21I	YACGTR	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	78, 123
PspCI	CACGTG	1 cut(s)	202
PspGI	CCWGG	2 cut(s)	78, 123
PsyI	GACNNNGTC	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	2 cut(s)	131, 514
RsaNI	GTAC	2 cut(s)	130, 513
SatI	GCNGC	3 cut(s)	90, 226, 583
Sau3AI	GATC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	80, 125
SfaNI	GCATC	1 cut(s)	599
SphI	GCATGC	1 cut(s)	141
Sse9I	AATT	2 cut(s)	243, 462
SsiI	CCGC	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	78, 123
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	5 cut(s)	111, 145, 157, 421, 603
TasI	AATT	2 cut(s)	243, 462
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	2 cut(s)	179, 605
TscAI	CASTG	2 cut(s)	279, 523
TseI	GCWGC	2 cut(s)	89, 225
TspDTI	ATGAA	2 cut(s)	561, 612
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	279, 523
Tth111I	GACNNNGTC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	462
XceI	RCATGY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	558
Zsp2I	ATGCAT	2 cut(s)	143, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.