Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002530

Physical Location & Seq

Genomic Coordinates Forward (+)

57798393 .. 57800833

Gene Structure 2441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGGAGGAAATGGACGAAACCGAAGCTCTACCTCAGGTGTACATGGCATGCATTCGACAAGGTCATCGAGTGGGAGTTTCTTATTATGATTCCAGTATTCGCCAACTTCACGTGATGGAAGTTTGGGAAGATGGCAGCATGGACTTCCCCCTAATTGATATGGTGAAATATCAAGCTAAGCCACTGATCATCTACACAAGCACAAAAAGCGAGGAAGCTTTCTTGTCTGCTTTACAACGAAGTGATGGAACAACAGAGGCTTTTACTGTCAAGCTTGTGAAAAGTTCAGTATTTAGCTATGAGCAAGCATGGCACAGATTGATATACCTTCGACTAACAGGAATGGATGATGGGTTAGACATCAAGGAAAGAATTTGTTATTTGAGTTCTATGATGGACATGGGAAGTGATGTTCAAGTTCGTACCAGTGGAGGTCTTCTTGCCATATTAGAGAATGAAAGGATTGTAGACACACTTGAACAAATGGAATGCGGCAATGCATCTATTGCAATCGATTCTGTTATAGAAGTTTCATTAAACAATTTTCTAAAACTTGATGCTGCAGCTCATGAGGCGTTGCAGATATTCCAAACAGATAAGCATCCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000710 GO:0000712 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0010777 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

204

Amino Acids

23.09

Weight (kDa)

4.58

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20475 AT3G20475 AT3G20475
fragaria_vesca	FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000
malus_domestica	MD11G1214700.v1.1
prunus_persica	Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0040391 RchiOBHm_Chr5g0040451
rosa_laevigata	RLG00000033976
rosa_multiflora	Rmu_sc0004516.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040210 Rroxscaffold_1G00040250 Rroxscaffold_1G00040300 Rroxscaffold_1G00040940
rosa_rugosa	Rorug05G0184700
rosa_samantha	Rh5AG272000 Rh5BG275900 Rh5CG308000 Rh5DG284100
rosa_wichuraiana	Rw5G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	375
AcvI	CACGTG	1 cut(s)	115
AfaI	GTAC	2 cut(s)	44, 427
AgsI	TTSAA	2 cut(s)	419, 482
AloI	GAACNNNNNNTCC	2 cut(s)	399, 431
AluBI	AGCT	7 cut(s)	29, 179, 221, 277, 300, 569, 612
AluI	AGCT	7 cut(s)	29, 179, 221, 277, 300, 569, 612
ApeKI	GCWGC	3 cut(s)	138, 563, 566
ApoI	RAATTY	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	150, 550, 578
BccI	CCATC	5 cut(s)	112, 128, 242, 347, 391
BclI	TGATCA	1 cut(s)	189
BfaI	CTAG	2 cut(s)	609, 613
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	4 cut(s)	139, 496, 564, 567
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	4 cut(s)	140, 497, 565, 568
BmsI	GCATC	2 cut(s)	512, 550
BpiI	GAAGAC	1 cut(s)	431
Bpu1102I	GCTNAGC	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	516
BsaAI	YACGTR	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	603
Bse1I	ACTGG	2 cut(s)	96, 429
Bse21I	CCTNAGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	505
Bse8I	GATNNNNATC	1 cut(s)	603
BseCI	ATCGAT	1 cut(s)	516
BseGI	GGATG	2 cut(s)	355, 604
BseJI	GATNNNNATC	1 cut(s)	603
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	96, 429
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	150, 550, 578
BshVI	ATCGAT	1 cut(s)	516
BsmI	GAATGC	2 cut(s)	54, 497
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	189
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	516
BspHI	TCATGA	1 cut(s)	571
BspMAI	CTGCAG	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	96, 429
BssMI	GATC	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	52, 309
BstDEI	CTNAG	2 cut(s)	36, 180
BstF5I	GGATG	2 cut(s)	355, 604
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 313, 509, 575
BstNSI	RCATGY	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	3 cut(s)	150, 550, 578
BstV2I	GAAGAC	1 cut(s)	431
Bsu15I	ATCGAT	1 cut(s)	516
Bsu36I	CCTNAGG	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	355, 604
BtsIMutI	CAGTG	2 cut(s)	185, 436
Cac8I	GCNNGC	2 cut(s)	52, 309
CciI	TCATGA	1 cut(s)	571
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	43, 426
CviAII	CATG	6 cut(s)	46, 51, 142, 312, 403, 572
CviJI	RGCY	9 cut(s)	29, 179, 184, 221, 263, 277, 300, 569, 612
CviKI_1	RGCY	9 cut(s)	29, 179, 184, 221, 263, 277, 300, 569, 612
CviQI	GTAC	2 cut(s)	43, 426
DdeI	CTNAG	2 cut(s)	36, 180
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eco72I	CACGTG	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	36
EcoT22I	ATGCAT	2 cut(s)	56, 505
FaeI	CATG	6 cut(s)	49, 54, 145, 315, 406, 575
FatI	CATG	6 cut(s)	45, 50, 141, 311, 402, 571
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	4 cut(s)	139, 496, 564, 567
FokI	GGATG	2 cut(s)	362, 591
Fsp4HI	GCNGC	4 cut(s)	139, 496, 564, 567
FspBI	CTAG	2 cut(s)	609, 613
GluI	GCNGC	4 cut(s)	139, 496, 564, 567
Hin1II	CATG	6 cut(s)	49, 54, 145, 315, 406, 575
HindIII	AAGCTT	2 cut(s)	219, 275
HinfI	GANTC	2 cut(s)	92, 518
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	43, 472
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	2 cut(s)	43, 472
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	54, 503, 512, 566, 583
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 313, 509, 575
HpyF3I	CTNAG	2 cut(s)	36, 180
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	49, 54, 145, 315, 406, 575
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	189
LpnPI	CCDG	4 cut(s)	23, 109, 327, 442
Lsp1109I	GCAGC	3 cut(s)	150, 550, 578
LweI	GCATC	2 cut(s)	512, 550
MaeI	CTAG	2 cut(s)	609, 613
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	2 cut(s)	143, 431
MluCI	AATT	3 cut(s)	156, 375, 544
MnlI	CCTC	5 cut(s)	45, 208, 253, 428, 568
Mph1103I	ATGCAT	2 cut(s)	56, 505
MseI	TTAA	1 cut(s)	539
Mva1269I	GAATGC	2 cut(s)	54, 497
MwoI	GCNNNNNNNGC	4 cut(s)	210, 313, 509, 575
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	6 cut(s)	49, 54, 145, 315, 406, 575
NsiI	ATGCAT	2 cut(s)	56, 505
NspI	RCATGY	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	54
PagI	TCATGA	1 cut(s)	571
PctI	GAATGC	2 cut(s)	54, 497
PfeI	GAWTC	2 cut(s)	92, 518
PflFI	GACNNNGTC	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	140, 497, 565, 568
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	115
PspCI	CACGTG	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	568
PsyI	GACNNNGTC	1 cut(s)	63
RsaI	GTAC	2 cut(s)	44, 427
RsaNI	GTAC	2 cut(s)	43, 426
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	4 cut(s)	139, 496, 564, 567
Sau3AI	GATC	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	512, 550
SfcI	CTRYAG	1 cut(s)	564
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	3 cut(s)	156, 375, 544
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	2 cut(s)	609, 613
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	58, 70, 334, 516
TasI	AATT	3 cut(s)	156, 375, 544
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	2 cut(s)	92, 518
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	2 cut(s)	192, 436
TseI	GCWGC	3 cut(s)	138, 563, 566
TspDTI	ATGAA	2 cut(s)	474, 525
TspRI	CASTG	2 cut(s)	192, 436
Tth111I	GACNNNGTC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	375
XceI	RCATGY	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	2 cut(s)	609, 613
Zsp2I	ATGCAT	2 cut(s)	56, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.