Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002530

Physical Location & Seq

Genomic Coordinates Forward (+)

58670496 .. 58681952

Gene Structure 11457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGGAGGAGGAAATGGACGAAACCGAAGCTCTACCTCAGGTGTACATGGCATGCATTCGACAAGGTCATCGAGTGGGAGTTTCTTATTATGATTCCAGTATTCGCCAACTTCACGTGATGGAAGTTTGGGAAGATGGCAGCATGGACTTCCCCCTAATTGATATGGTGAAATATCAAGCTAAGCCACTGATCATCTACACAAGCACAAAAAGCGAGGAAGCTTTCTTGTCTGCTTTACAACGAAGTGATGGAACAACAGAGGCTTTTACTGTCAAGCTTGTGAAAAGTTCAGTATTTAGCTATGAGCAAGCATGGCACAGATTGATATATCTTCGAGTAACAGGAATGGATGATGGGTTAGACATCAAGGAAAGAATTTGTTATTTGAGTTCTATGATGGACATGGGAAGTGATGTTCAAGTTCGTACCAGTGGAGGCCTTCTTGCCATATTAGAGAATGAAAGGATTGTAGACACACTTGAACAAATGGAATGCGGCAATGCATCTATTGCAATCGATTCAGTTATAGAAGTTTCATTGTATCTTTTTATTTGTCTTTTGACTCATGAGGCGTTGCAGATATTCCAAACAGATAAGCATCCCAGCCATATGGGCATTGGTAGAGCAAAAGAAGGGTTTTCTGTGTTTGGCATGTTGAATAAGTGTGTAACTCCTATTGGGAGGCGCCTCTTGAGGAGCTGGTTCCTAAGGCCAATAATTGACCTTGAAATTTTGAACAGTCGTCTTGATGCCATATCATTCTTTATATCTTCAGAAGAACTAATTATGTCTTTACAGTCAACTCTGAAATCTGTTAAGGATATTCCTCACATACTCAAGAAATTCAACTCCCCAAGCTCCGTATGTACCAGTACTGATTGGACAGCTTTTCTAAAGAGTGTTTGCTCACTCTTGCACGTGAACAAGATATTTGAAGTGGGTGTTTCTGAGAGTCTTCAAGAGCATGCCAAGTACCTGAATTTGGACATTGTTGAGAAGGCTGCTTCATGCATTACAACTGAGCTTGCTTATGTATATGAATTGGTAATTGGTGTTCTTGACATAAACAGAAGTAAAGAGAAGGGATATGAGACAATTGTAAAAGATGACTTCTGTACTGAGTTAGATGAGCTGAGGCAAATATATGAGGAATTGCCTGAATTTCTGGAAGAGGTTTCAAAAATGGAACTTGGAAGACTTCCACAGCTGTGCAAAGACAAGCTTGTTCCTTGTATTGTTTATATACACCAGATAGGATACTTGATGTGCATTTTTGAAGAAAAACTTGATGAAGCTACCCTGGAGACACTTCAAGATTTTGAGTTTGCTCTGAACTTGATTGGTGAGAATCATTTTAATGCCAGTGCTCTCACCCTAGCTTCCTCCTTCCCCCACCCCATTCTTTTGATAAGTCTGTGCATTTCTTTTTGGAGAATTAATATCATCACTGGTCCCAACTATTCAGGGAAAAGCATCTACATAAAGCAGGTAGCTTTGATTGTTTTCCTAGCCCATATAGGAAGTTTTGTTCCGGCAGATGCTGCAACTGTGGGTTTGACTGATAGAATATTCTGCGCAATGGGAAGCAAGCTCATGGCTGCAGAACAATCAACGTTCATGATTGATCTGCATCAAGTAGGGATGATGCTAAGGCAGGCAACTTCACGGTCTTTGTGTCTCTTGGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGCGTTGGTCTGCTTGGTGGAACCATAAACTACTTGGTGTCCTATGATGACCCCCCAAAGGTTCTAGTGTGCACCCACTTGACTGAGTTATTCAGCGAGAGTTGCTTACCTGAATCCAAGAAGATCACATTTTACACTATGAGTGTGCTGAGGCCTGACAACTTGACAGATATTGAGGATATTGTTTTCCTATATAGGCTAGTTCCTGGGCATGCACTACGTAGTTATGGTCTTCATTGTGCTCTACTTGCTGGTGTCCCGGAGGAAGTTATCAAGAGAGCAGCATTTGTATTGGAAGCCATTGGAAATAATCAGCATGTCGAGCGATTGTGCAATGAGAATTTATCAGTTCAGGATCAGCAATACCAGGTTGCCAGTTGGATCTGGATGGCAATGCGCAAGGCATTAACTCCATCTTCAGTTGATGATAACCAGACCTTCACTGATCCATTCATTAGAGATGTTGATGAATGTATAGGATGGACTCGATCCCAGAAGACATGCCCCCTCTGTTGGAGCAGTAAGATGAAAGGGGCAGACAAGCAGCCTGAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000710 GO:0000712 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0010777 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042623 GO:0043073 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MutS_III MutS_IV MutS_V

Protein Analysis

757

Amino Acids

85.42

Weight (kDa)

5.01

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_III	PF05192	188 - 393	5.2e-25	MutS domain III
MutS_V	PF00488	481 - 672	2.1e-48	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20475 AT3G20475 AT3G20475
fragaria_vesca	FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000 FvH4_3g23000
malus_domestica	MD11G1214700.v1.1
prunus_persica	Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1 Prupe.4G216500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0040391 RchiOBHm_Chr5g0040451
rosa_laevigata	RLG00000033976
rosa_multiflora	Rmu_sc0004516.1_g000007
rosa_roxburghii	Rroxscaffold_1G00040210 Rroxscaffold_1G00040250 Rroxscaffold_1G00040300 Rroxscaffold_1G00040940
rosa_rugosa	Rorug05G0184700
rosa_samantha	Rh5AG272000 Rh5BG275900 Rh5CG308000 Rh5DG284100
rosa_wichuraiana	Rw5G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1576, 2114
Acc36I	ACCTGC	1 cut(s)	1477
AccB1I	GGYRCC	1 cut(s)	684
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	1 cut(s)	495
AclI	AACGTT	1 cut(s)	1613
AclWI	GGATC	4 cut(s)	2079, 2105, 2156, 2199
AcsI	RAATTY	7 cut(s)	375, 729, 842, 979, 1160, 1688, 2056
AcuI	CTGAAG	2 cut(s)	756, 2118
AcvI	CACGTG	2 cut(s)	115, 919
AcyI	GRCGYC	1 cut(s)	685
AfaI	GTAC	7 cut(s)	44, 427, 868, 874, 974, 1117, 1702
AfiI	CCNNNNNNNGG	3 cut(s)	982, 1774, 2229
AjnI	CCWGG	3 cut(s)	1299, 1921, 2082
AjuI	GAANNNNNNNTTGG	4 cut(s)	1032, 1064, 1704, 1736
AleI	CACNNNNGTG	1 cut(s)	1207
AloI	GAACNNNNNNTCC	4 cut(s)	399, 431, 1512, 1544
Alw21I	GWGCWC	3 cut(s)	1369, 1790, 1960
Alw26I	GTCTC	3 cut(s)	1085, 1298, 1682
Alw44I	GTGCAC	1 cut(s)	1786
AlwI	GGATC	4 cut(s)	2079, 2105, 2156, 2199
AlwNI	CAGNNNCTG	1 cut(s)	1541
AoxI	GGCC	3 cut(s)	436, 710, 1868
ApaLI	GTGCAC	1 cut(s)	1786
ApeKI	GCWGC	6 cut(s)	138, 1001, 1541, 1598, 1997, 2260
ApoI	RAATTY	7 cut(s)	375, 729, 842, 979, 1160, 1688, 2056
AseI	ATTAAT	1 cut(s)	1437
AspLEI	GCGC	3 cut(s)	687, 1577, 2115
AspS9I	GGNCC	1 cut(s)	1451
AsuC2I	CCSGG	1 cut(s)	1976
AsuHPI	GGTGA	3 cut(s)	178, 1355, 1363
AvaII	GGWCC	1 cut(s)	1451
AxyI	CCTNAGG	2 cut(s)	36, 707
BaeGI	GKGCMC	1 cut(s)	1790
BanI	GGYRCC	1 cut(s)	684
BbrPI	CACGTG	2 cut(s)	115, 919
BbsI	GAAGAC	4 cut(s)	947, 1201, 1940, 2219
Bbv12I	GWGCWC	3 cut(s)	1369, 1790, 1960
BbvCI	CCTCAGC	2 cut(s)	1133, 1865
BbvI	GCAGC	5 cut(s)	150, 988, 1528, 1585, 2009
BccI	CCATC	9 cut(s)	112, 128, 242, 347, 391, 1709, 2098, 2137, 2190
BciT130I	CCWGG	3 cut(s)	1301, 1923, 2084
BciVI	GTATCC	1 cut(s)	1250
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	1976
BcoDI	GTCTC	3 cut(s)	1085, 1298, 1682
BfaI	CTAG	4 cut(s)	1376, 1508, 1781, 1916
BfmI	CTRYAG	1 cut(s)	1599
BfoI	RGCGCY	1 cut(s)	688
BfuAI	ACCTGC	1 cut(s)	1477
BfuI	GTATCC	1 cut(s)	1250
BglI	GCCNNNNNGGC	1 cut(s)	612
BisI	GCNGC	7 cut(s)	139, 496, 1002, 1542, 1599, 1998, 2261
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	7 cut(s)	140, 497, 1003, 1543, 1600, 1999, 2262
BmcAI	AGTACT	1 cut(s)	874
Bme1390I	CCNGG	4 cut(s)	1301, 1923, 1976, 2084
Bme18I	GGWCC	1 cut(s)	1451
BmgT120I	GGNCC	1 cut(s)	1451
BmiI	GGNNCC	4 cut(s)	686, 704, 1453, 1738
BmrFI	CCNGG	4 cut(s)	1301, 1923, 1976, 2084
BmsI	GCATC	7 cut(s)	512, 607, 739, 1482, 1528, 1635, 1639
BpiI	GAAGAC	4 cut(s)	947, 1201, 1940, 2219
BpmI	CTGGAG	1 cut(s)	1322
Bpu10I	CCTNAGC	4 cut(s)	1133, 1649, 1865, 2265
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	712, 821
BpuMI	CCSGG	1 cut(s)	1976
Bsa29I	ATCGAT	1 cut(s)	516
BsaAI	YACGTR	3 cut(s)	115, 919, 1937
BsaBI	GATNNNNATC	2 cut(s)	597, 1629
BsaHI	GRCGYC	1 cut(s)	685
BsaJI	CCNNGG	2 cut(s)	1299, 1922
Bsc4I	CCNNNNNNNGG	3 cut(s)	982, 1774, 2229
Bse1I	ACTGG	6 cut(s)	96, 429, 870, 1362, 1453, 2091
Bse21I	CCTNAGG	2 cut(s)	36, 707
Bse3DI	GCAATG	4 cut(s)	505, 1584, 2056, 2115
Bse8I	GATNNNNATC	2 cut(s)	597, 1629
BseBI	CCWGG	3 cut(s)	1301, 1923, 2084
BseCI	ATCGAT	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	1299, 1922
BseGI	GGATG	6 cut(s)	355, 598, 1647, 1690, 2109, 2201
BseJI	GATNNNNATC	2 cut(s)	597, 1629
BseLI	CCNNNNNNNGG	3 cut(s)	982, 1774, 2229
BseMI	GCAATG	4 cut(s)	505, 1584, 2056, 2115
BseMII	CTCAG	8 cut(s)	50, 939, 1011, 1110, 1124, 1791, 1856, 2256
BseNI	ACTGG	6 cut(s)	96, 429, 870, 1362, 1453, 2091
BseRI	GAGGAG	2 cut(s)	20, 709
BseSI	GKGCMC	1 cut(s)	1790
BseXI	GCAGC	5 cut(s)	150, 988, 1528, 1585, 2009
BseYI	CCCAGC	1 cut(s)	602
BshFI	GGCC	3 cut(s)	438, 712, 1870
BshNI	GGYRCC	1 cut(s)	684
BshVI	ATCGAT	1 cut(s)	516
BsiHKAI	GWGCWC	3 cut(s)	1369, 1790, 1960
BsiSI	CCGG	2 cut(s)	1532, 1976
BslFI	GGGAC	2 cut(s)	1437, 1958
BslI	CCNNNNNNNGG	3 cut(s)	982, 1774, 2229
BsmAI	GTCTC	3 cut(s)	1085, 1298, 1682
BsmFI	GGGAC	2 cut(s)	1437, 1958
BsmI	GAATGC	2 cut(s)	54, 497
BsnI	GGCC	3 cut(s)	438, 712, 1870
Bsp1286I	GDGCHC	3 cut(s)	1369, 1790, 1960
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	7 cut(s)	189, 1624, 1839, 2071, 2097, 2161, 2204
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	3 cut(s)	438, 712, 1870
BspCNI	CTCAG	8 cut(s)	49, 940, 1012, 1111, 1125, 1792, 1857, 2257
BspDI	ATCGAT	1 cut(s)	516
BspHI	TCATGA	2 cut(s)	565, 1617
BspLI	GGNNCC	4 cut(s)	686, 704, 1453, 1738
BspMAI	CTGCAG	1 cut(s)	1603
BspMI	ACCTGC	1 cut(s)	1477
BspPI	GGATC	4 cut(s)	2079, 2105, 2156, 2199
BspT107I	GGYRCC	1 cut(s)	684
BsrDI	GCAATG	4 cut(s)	505, 1584, 2056, 2115
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	6 cut(s)	96, 429, 870, 1362, 1453, 2091
BssECI	CCNNGG	2 cut(s)	1299, 1922
BssMI	GATC	7 cut(s)	189, 1624, 1839, 2071, 2097, 2161, 2204
BssNI	GRCGYC	1 cut(s)	685
Bst2UI	CCWGG	3 cut(s)	1301, 1923, 2084
Bst4CI	ACNGT	5 cut(s)	271, 740, 798, 1549, 1668
Bst6I	CTCTTC	1 cut(s)	1164
BstACI	GRCGYC	1 cut(s)	685
BstAPI	GCANNNNNTGC	2 cut(s)	509, 1541
BstAUI	TGTACA	1 cut(s)	42
BstBAI	YACGTR	3 cut(s)	115, 919, 1937
BstC8I	GCNNGC	7 cut(s)	52, 309, 966, 1026, 1589, 1656, 1929
BstF5I	GGATG	6 cut(s)	355, 598, 1647, 1690, 2109, 2201
BstH2I	RGCGCY	1 cut(s)	688
BstHHI	GCGC	3 cut(s)	687, 1577, 2115
BstKTI	GATC	7 cut(s)	192, 1627, 1842, 2074, 2100, 2164, 2207
BstMAI	GTCTC	3 cut(s)	1085, 1298, 1682
BstMBI	GATC	7 cut(s)	189, 1624, 1839, 2071, 2097, 2161, 2204
BstMWI	GCNNNNNNNGC	9 cut(s)	210, 313, 509, 612, 1541, 1818, 1964, 2038, 2266
BstNI	CCWGG	3 cut(s)	1301, 1923, 2084
BstNSI	RCATGY	6 cut(s)	54, 655, 968, 1931, 2036, 2220
BstSCI	CCNGG	4 cut(s)	1299, 1921, 1974, 2082
BstSFI	CTRYAG	1 cut(s)	1599
BstSLI	GKGCMC	1 cut(s)	1790
BstSNI	TACGTA	1 cut(s)	1937
BstV1I	GCAGC	5 cut(s)	150, 988, 1528, 1585, 2009
BstV2I	GAAGAC	4 cut(s)	947, 1201, 1940, 2219
BstX2I	RGATCY	1 cut(s)	2097
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	2097
Bsu15I	ATCGAT	1 cut(s)	516
Bsu36I	CCTNAGG	2 cut(s)	36, 707
BsuI	GTATCC	1 cut(s)	1250
BsuRI	GGCC	3 cut(s)	438, 712, 1870
BsuTUI	ATCGAT	1 cut(s)	516
BtsCI	GGATG	6 cut(s)	355, 598, 1647, 1690, 2109, 2201
BtsIMutI	CAGTG	5 cut(s)	185, 436, 1369, 1446, 2157
BveI	ACCTGC	1 cut(s)	1477
Cac8I	GCNNGC	7 cut(s)	52, 309, 966, 1026, 1589, 1656, 1929
CaiI	CAGNNNCTG	1 cut(s)	1541
CciI	TCATGA	2 cut(s)	565, 1617
CfoI	GCGC	3 cut(s)	687, 1577, 2115
Cfr13I	GGNCC	1 cut(s)	1451
ClaI	ATCGAT	1 cut(s)	516
CsiI	ACCWGGT	1 cut(s)	2082
Csp6I	GTAC	7 cut(s)	43, 426, 867, 873, 973, 1116, 1701
CviQI	GTAC	7 cut(s)	43, 426, 867, 873, 973, 1116, 1701
DinI	GGCGCC	1 cut(s)	686
DpnI	GATC	7 cut(s)	191, 1626, 1841, 2073, 2099, 2163, 2206
DpnII	GATC	7 cut(s)	189, 1624, 1839, 2071, 2097, 2161, 2204
Eam1104I	CTCTTC	1 cut(s)	1164
EarI	CTCTTC	1 cut(s)	1164
Eco105I	TACGTA	1 cut(s)	1937
Eco147I	AGGCCT	2 cut(s)	438, 1870
Eco47I	GGWCC	1 cut(s)	1451
Eco57I	CTGAAG	2 cut(s)	756, 2118
Eco72I	CACGTG	2 cut(s)	115, 919
Eco81I	CCTNAGG	2 cut(s)	36, 707
EcoRII	CCWGG	3 cut(s)	1299, 1921, 2082
EcoT22I	ATGCAT	3 cut(s)	56, 505, 1013
EgeI	GGCGCC	1 cut(s)	686
EheI	GGCGCC	1 cut(s)	686
FalI	AAGNNNNNCTT	6 cut(s)	1206, 1238, 1269, 1301, 1689, 1721
FaqI	GGGAC	2 cut(s)	1437, 1958
FauNDI	CATATG	1 cut(s)	609
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	7 cut(s)	139, 496, 1002, 1542, 1599, 1998, 2261
FokI	GGATG	6 cut(s)	362, 585, 1654, 1697, 2116, 2208
Fsp4HI	GCNGC	7 cut(s)	139, 496, 1002, 1542, 1599, 1998, 2261
FspBI	CTAG	4 cut(s)	1376, 1508, 1781, 1916
FspI	TGCGCA	2 cut(s)	1576, 2114
GlaI	GCGC	3 cut(s)	686, 1576, 2114
GluI	GCNGC	7 cut(s)	139, 496, 1002, 1542, 1599, 1998, 2261
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	1322
HaeII	RGCGCY	1 cut(s)	688
HaeIII	GGCC	3 cut(s)	438, 712, 1870
HapII	CCGG	2 cut(s)	1532, 1976
HhaI	GCGC	3 cut(s)	687, 1577, 2115
Hin1I	GRCGYC	1 cut(s)	685
Hin6I	GCGC	3 cut(s)	685, 1575, 2113
HinP1I	GCGC	3 cut(s)	685, 1575, 2113
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	3 cut(s)	219, 275, 1220
HinfI	GANTC	7 cut(s)	92, 518, 562, 952, 1348, 1829, 2200
HpaII	CCGG	2 cut(s)	1532, 1976
HphI	GGTGA	3 cut(s)	178, 1355, 1363
Hpy166II	GTNNAC	5 cut(s)	43, 472, 801, 922, 1788
Hpy188I	TCNGA	4 cut(s)	775, 807, 949, 1332
Hpy8I	GTNNAC	5 cut(s)	43, 472, 801, 922, 1788
HpyAV	CCTTC	6 cut(s)	449, 626, 991, 1075, 1396, 2164
HpyCH4III	ACNGT	5 cut(s)	271, 740, 798, 1549, 1668
HpyCH4IV	ACGT	4 cut(s)	114, 918, 1613, 1936
HpyF10VI	GCNNNNNNNGC	9 cut(s)	210, 313, 509, 612, 1541, 1818, 1964, 2038, 2266
HpySE526I	ACGT	4 cut(s)	114, 918, 1613, 1936
Hsp92I	GRCGYC	1 cut(s)	685
HspAI	GCGC	3 cut(s)	685, 1575, 2113
KasI	GGCGCC	1 cut(s)	684
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	7 cut(s)	189, 1624, 1839, 2071, 2097, 2161, 2204
LmnI	GCTCC	3 cut(s)	696, 863, 2232
Lsp1109I	GCAGC	5 cut(s)	150, 988, 1528, 1585, 2009
LweI	GCATC	7 cut(s)	512, 607, 739, 1482, 1528, 1635, 1639
MabI	ACCWGGT	1 cut(s)	2082
MaeI	CTAG	4 cut(s)	1376, 1508, 1781, 1916
MaeII	ACGT	4 cut(s)	114, 918, 1613, 1936
MaeIII	GTNAC	2 cut(s)	337, 667
MalI	GATC	7 cut(s)	191, 1626, 1841, 2073, 2099, 2163, 2206
MboI	GATC	7 cut(s)	189, 1624, 1839, 2071, 2097, 2161, 2204
MfeI	CAATTG	1 cut(s)	1095
MflI	RGATCY	1 cut(s)	2097
MhlI	GDGCHC	3 cut(s)	1369, 1790, 1960
Mly113I	GGCGCC	1 cut(s)	685
MlyI	GAGTC	3 cut(s)	556, 961, 2194
MmeI	TCCRAC	2 cut(s)	2075, 2210
Mph1103I	ATGCAT	3 cut(s)	56, 505, 1013
MseI	TTAA	4 cut(s)	816, 1356, 1437, 2123
MslI	CAYNNNNRTG	2 cut(s)	1207, 1356
MspA1I	CMGCKG	1 cut(s)	1207
MspI	CCGG	2 cut(s)	1532, 1976
MspR9I	CCNGG	4 cut(s)	1301, 1923, 1976, 2084
MunI	CAATTG	1 cut(s)	1095
Mva1269I	GAATGC	2 cut(s)	54, 497
MvaI	CCWGG	3 cut(s)	1301, 1923, 2084
MwoI	GCNNNNNNNGC	9 cut(s)	210, 313, 509, 612, 1541, 1818, 1964, 2038, 2266
NarI	GGCGCC	1 cut(s)	685
NciI	CCSGG	1 cut(s)	1976
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	7 cut(s)	189, 1624, 1839, 2071, 2097, 2161, 2204
NlaIV	GGNNCC	4 cut(s)	686, 704, 1453, 1738
NsbI	TGCGCA	2 cut(s)	1576, 2114
NsiI	ATGCAT	3 cut(s)	56, 505, 1013
NspI	RCATGY	6 cut(s)	54, 655, 968, 1931, 2036, 2220
OliI	CACNNNNGTG	1 cut(s)	1207
PaeI	GCATGC	3 cut(s)	54, 968, 1931
PagI	TCATGA	2 cut(s)	565, 1617
PceI	AGGCCT	2 cut(s)	438, 1870
PctI	GAATGC	2 cut(s)	54, 497
PfeI	GAWTC	4 cut(s)	92, 518, 1348, 1829
PflFI	GACNNNGTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	1974
PkrI	GCNGC	7 cut(s)	140, 497, 1003, 1543, 1600, 1999, 2262
PleI	GAGTC	3 cut(s)	556, 960, 2194
PluTI	GGCGCC	1 cut(s)	688
PmaCI	CACGTG	2 cut(s)	115, 919
PmlI	CACGTG	2 cut(s)	115, 919
PpsI	GAGTC	3 cut(s)	556, 960, 2194
Ppu21I	YACGTR	3 cut(s)	115, 919, 1937
PshBI	ATTAAT	1 cut(s)	1437
Psp1406I	AACGTT	1 cut(s)	1613
Psp6I	CCWGG	3 cut(s)	1299, 1921, 2082
PspCI	CACGTG	2 cut(s)	115, 919
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	3 cut(s)	1299, 1921, 2082
PspN4I	GGNNCC	4 cut(s)	686, 704, 1453, 1738
PspPI	GGNCC	1 cut(s)	1451
PsrI	GAACNNNNNNTAC	2 cut(s)	1038, 1070
PstI	CTGCAG	1 cut(s)	1603
PstNI	CAGNNNCTG	1 cut(s)	1541
PsuI	RGATCY	1 cut(s)	2097
PsyI	GACNNNGTC	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	1207
RsaI	GTAC	7 cut(s)	44, 427, 868, 874, 974, 1117, 1702
RsaNI	GTAC	7 cut(s)	43, 426, 867, 873, 973, 1116, 1701
RseI	CAYNNNNRTG	2 cut(s)	1207, 1356
SaqAI	TTAA	4 cut(s)	816, 1356, 1437, 2123
SatI	GCNGC	7 cut(s)	139, 496, 1002, 1542, 1599, 1998, 2261
Sau3AI	GATC	7 cut(s)	189, 1624, 1839, 2071, 2097, 2161, 2204
Sau96I	GGNCC	1 cut(s)	1451
ScaI	AGTACT	1 cut(s)	874
SchI	GAGTC	3 cut(s)	556, 961, 2194
ScrFI	CCNGG	4 cut(s)	1301, 1923, 1976, 2084
SduI	GDGCHC	3 cut(s)	1369, 1790, 1960
SexAI	ACCWGGT	1 cut(s)	2082
SfaNI	GCATC	7 cut(s)	512, 607, 739, 1482, 1528, 1635, 1639
SfcI	CTRYAG	1 cut(s)	1599
SfoI	GGCGCC	1 cut(s)	686
SinI	GGWCC	1 cut(s)	1451
SmiMI	CAYNNNNRTG	2 cut(s)	1207, 1356
SmlI	CTYRAG	2 cut(s)	691, 836
SmoI	CTYRAG	2 cut(s)	691, 836
SnaBI	TACGTA	1 cut(s)	1937
SphI	GCATGC	3 cut(s)	54, 968, 1931
SseBI	AGGCCT	2 cut(s)	438, 1870
SsiI	CCGC	1 cut(s)	495
SspDI	GGCGCC	1 cut(s)	684
SspI	AATATT	1 cut(s)	1569
SspMI	CTAG	4 cut(s)	1376, 1508, 1781, 1916
StuI	AGGCCT	2 cut(s)	438, 1870
StyD4I	CCNGG	4 cut(s)	1299, 1921, 1974, 2082
TaaI	ACNGT	5 cut(s)	271, 740, 798, 1549, 1668
TaiI	ACGT	4 cut(s)	117, 921, 1616, 1939
TaqI	TCGA	6 cut(s)	58, 70, 334, 516, 2037, 2203
TatI	WGTACW	3 cut(s)	42, 872, 1115
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	4 cut(s)	92, 518, 1348, 1829
Tru1I	TTAA	4 cut(s)	816, 1356, 1437, 2123
Tru9I	TTAA	4 cut(s)	816, 1356, 1437, 2123
TscAI	CASTG	5 cut(s)	192, 436, 1369, 1453, 2164
TseI	GCWGC	6 cut(s)	138, 1001, 1541, 1598, 1997, 2260
TspGWI	ACGGA	1 cut(s)	850
TspRI	CASTG	5 cut(s)	192, 436, 1369, 1453, 2164
Tth111I	GACNNNGTC	1 cut(s)	63
VneI	GTGCAC	1 cut(s)	1786
VpaK11BI	GGWCC	1 cut(s)	1451
VspI	ATTAAT	1 cut(s)	1437
XapI	RAATTY	7 cut(s)	375, 729, 842, 979, 1160, 1688, 2056
XceI	RCATGY	6 cut(s)	54, 655, 968, 1931, 2036, 2220
XcmI	CCANNNNNNNNNTGG	2 cut(s)	614, 1747
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	4 cut(s)	1376, 1508, 1781, 1916
ZrmI	AGTACT	1 cut(s)	874
Zsp2I	ATGCAT	3 cut(s)	56, 505, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.