FvH4_3g24380

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015576
Physical Location & Seq
Forward (+)
17449437 .. 17457590
8154 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24380.t1

Sequence Viewer

Length: 996 bp
ATGCCTGATTTCGGGAAGTTTTCGCTTATAAGGAGGCGTTCGGAGAGCATTACTGATGATACATTATTTGTGAAGGAGGACTTCTGCCGGCTTGAACTTCTAGGTGAAGAGCCTATGCATTTCTTTGCCGTCTTTGACGCTAATGGAGACTCTCATGTGTCTATGCTGTGCAAACAATTGATGCACCAATTCGTGGTGGAGGAACTGCGGCGCTTGTGCACCACTCCAGGGCTTGGTGACAACTTGAGCTTGGAGTTGGAAATGGGGAGCGAGCAGCAGCAGGAAGGAGAGGAGACCAAGTGGCATGATCTGGTGCGAGCAGCCCTAGAGAGGAGCTTTCAGAGGATGAACCGCCTCAGGCAACACACTTGCACGTGTGAGAACATCACTGATGGTTGCAGGTGTGGATTTATGATCCTCACGCCGCCGGTTGCGGCTGTAGTGGCAATCTTAACTGCTCGGAATGTTGTCATTGCCAACTCCGGTACCTCACGCGCCGTCCTTGGCCGCGCCGGTAGTTCTTTACCAGTCTTGGATAATTCCAAGCCTGAAAGACTAGATGAACAAGAAAGGCTTCGTGCAGTAGATGGTCGGGTTTTTCATCACAACGGCATGCGTGTTTATGGAATTCATAACATATCGCAGTCCCCAGCGCAAACAGGGGATCACCACCTTGTGAATACTTCTTTCACAGAAAGAGAGGGAAATGAAGATGAGTGCTTGATTCTAGCCAATCATGGTATTTGGGATGCTATATCAGATGACATGGCTTGCAGGGTAGCTACAACATGCCTCACACTTGAAGATGGGGAACCTGCTAGAGCTCCGGGTAACAATGGTCCTCTTTATGATCCAGACACGTGTGACGATGAGACGAACAGGTTTTTCTCTTCCAAAACCAGCAGTGCAGCTGCAATACTCTGCCGCCTCGCTTTGGGCCGTGGAAGTCGAGGTGACGCAAGTGCCATAGTTGTCGATTTAGTCGCTAGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

332

Amino Acids

36.62

Weight (kDa)

5.19

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 19 - 268 9.6e-18 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24380
malus_domestica MD01G1191100.v1.1
prunus_persica Prupe.2G285600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043861 RchiOBHm_Chr5g0043871
rosa_laevigata RLG00000034220
rosa_multiflora Rmu_co8273823.1_g000001 Rmu_sc0009227.1_g000016 Rmu_sc0010851.1_g000002
rosa_roxburghii Rroxscaffold_1G00037190
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292900 Rh5BG301000 Rh5CG328600 Rh5DG309900
rosa_wichuraiana Rw5G027160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 29
AarI CACCTGC 1 cut(s) 390
Acc36I ACCTGC 2 cut(s) 390, 823
Acc65I GGTACC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 485
AccB7I CCANNNNNTGG 2 cut(s) 193, 233
AccII CGCG 2 cut(s) 495, 510
AciI CCGC 6 cut(s) 208, 352, 425, 434, 508, 925
AclWI GGATC 3 cut(s) 409, 672, 845
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 627
AcvI CACGTG 2 cut(s) 375, 861
AdeI CACNNNGTG 1 cut(s) 676
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 6 cut(s) 11, 193, 228, 233, 330, 934
AflIII ACRYGT 3 cut(s) 374, 858, 860
AgsI TTSAA 2 cut(s) 95, 803
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 5 cut(s) 249, 336, 782, 824, 911
AluI AGCT 5 cut(s) 249, 336, 782, 824, 911
Alw21I GWGCWC 2 cut(s) 221, 826
Alw26I GTCTC 3 cut(s) 141, 287, 866
Alw44I GTGCAC 1 cut(s) 217
AlwI GGATC 3 cut(s) 409, 672, 845
AoxI GGCC 3 cut(s) 505, 937, 989
ApaLI GTGCAC 1 cut(s) 217
ApeKI GCWGC 5 cut(s) 274, 277, 320, 908, 911
ApoI RAATTY 1 cut(s) 627
Asp700I GAANNNNTTC 1 cut(s) 573
Asp718I GGTACC 1 cut(s) 485
AspLEI GCGC 4 cut(s) 213, 497, 512, 655
AspS9I GGNCC 3 cut(s) 839, 937, 990
AsuC2I CCSGG 1 cut(s) 828
AsuHPI GGTGA 4 cut(s) 116, 248, 659, 965
AvaII GGWCC 1 cut(s) 839
AxyI CCTNAGG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 221
BaeI ACNNNNGTAYC 2 cut(s) 469, 502
BanI GGYRCC 1 cut(s) 485
BanII GRGCYC 1 cut(s) 826
BbrPI CACGTG 2 cut(s) 375, 861
Bbv12I GWGCWC 2 cut(s) 221, 826
BbvI GCAGC 5 cut(s) 286, 289, 332, 898, 920
BccI CCATC 3 cut(s) 386, 581, 800
BceAI ACGGC 4 cut(s) 113, 482, 625, 924
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 1 cut(s) 828
BcoDI GTCTC 3 cut(s) 141, 287, 866
BfaI CTAG 6 cut(s) 101, 326, 557, 728, 819, 987
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 214
BfuAI ACCTGC 2 cut(s) 390, 823
Bme1390I CCNGG 2 cut(s) 228, 828
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 3 cut(s) 839, 937, 990
BmiI GGNNCC 2 cut(s) 487, 813
BmrFI CCNGG 2 cut(s) 228, 828
BmsI GCATC 2 cut(s) 171, 739
BpmI CTGGAG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 828
BsaAI YACGTR 2 cut(s) 375, 861
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 3 cut(s) 227, 502, 940
BsaWI WCCGGW 1 cut(s) 482
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 6 cut(s) 11, 193, 228, 233, 330, 934
Bse118I RCCGGY 3 cut(s) 87, 427, 512
Bse1I ACTGG 1 cut(s) 527
Bse21I CCTNAGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 227, 502, 940
BseGI GGATG 2 cut(s) 351, 754
BseLI CCNNNNNNNGG 6 cut(s) 11, 193, 228, 233, 330, 934
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 1 cut(s) 527
BseRI GAGGAG 2 cut(s) 305, 346
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 5 cut(s) 286, 289, 332, 898, 920
BseYI CCCAGC 1 cut(s) 649
BsgI GTGCAG 2 cut(s) 600, 927
Bsh1236I CGCG 2 cut(s) 495, 510
BshFI GGCC 3 cut(s) 507, 939, 991
BshNI GGYRCC 1 cut(s) 485
BsiHKAI GWGCWC 2 cut(s) 221, 826
BsiSI CCGG 5 cut(s) 88, 428, 483, 513, 827
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 6 cut(s) 11, 193, 228, 233, 330, 934
BsmAI GTCTC 3 cut(s) 141, 287, 866
BsmBI CGTCTC 1 cut(s) 866
BsmFI GGGAC 1 cut(s) 631
BsnI GGCC 3 cut(s) 507, 939, 991
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 221, 826
Bsp143I GATC 4 cut(s) 307, 414, 664, 850
BspACI CCGC 6 cut(s) 208, 352, 425, 434, 508, 925
BspANI GGCC 3 cut(s) 507, 939, 991
BspCNI CTCAG 1 cut(s) 369
BspFNI CGCG 2 cut(s) 495, 510
BspLI GGNNCC 2 cut(s) 487, 813
BspMI ACCTGC 2 cut(s) 390, 823
BspPI GGATC 3 cut(s) 409, 672, 845
BspQI GCTCTTC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 3 cut(s) 87, 427, 512
BsrI ACTGG 1 cut(s) 527
BssAI RCCGGY 3 cut(s) 87, 427, 512
BssECI CCNNGG 3 cut(s) 227, 502, 940
BssMI GATC 4 cut(s) 307, 414, 664, 850
BssT1I CCWWGG 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 102, 895
BstBAI YACGTR 2 cut(s) 375, 861
BstC8I GCNNGC 5 cut(s) 89, 272, 318, 614, 772
BstDEI CTNAG 1 cut(s) 356
BstDSI CCRYGG 1 cut(s) 940
BstF5I GGATG 2 cut(s) 351, 754
BstFNI CGCG 2 cut(s) 495, 510
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 4 cut(s) 213, 497, 512, 655
BstKTI GATC 4 cut(s) 310, 417, 667, 853
BstMAI GTCTC 3 cut(s) 141, 287, 866
BstMBI GATC 4 cut(s) 307, 414, 664, 850
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 2 cut(s) 616, 792
BstSCI CCNGG 2 cut(s) 226, 826
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 2 cut(s) 495, 510
BstV1I GCAGC 5 cut(s) 286, 289, 332, 898, 920
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 3 cut(s) 507, 939, 991
BtgI CCRYGG 1 cut(s) 940
BtsCI GGATG 2 cut(s) 351, 754
BtsI GCAGTG 1 cut(s) 910
BtsIMutI CAGTG 2 cut(s) 387, 910
BveI ACCTGC 2 cut(s) 390, 823
Cac8I GCNNGC 5 cut(s) 89, 272, 318, 614, 772
CfoI GCGC 4 cut(s) 213, 497, 512, 655
Cfr10I RCCGGY 3 cut(s) 87, 427, 512
Cfr13I GGNCC 3 cut(s) 839, 937, 990
CseI GACGC 2 cut(s) 146, 965
Csp6I GTAC 1 cut(s) 486
CviAII CATG 6 cut(s) 155, 305, 613, 737, 766, 789
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 1 cut(s) 356
DpnI GATC 4 cut(s) 309, 416, 666, 852
DpnII GATC 4 cut(s) 307, 414, 664, 850
DraIII CACNNNGTG 1 cut(s) 676
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 102, 895
EarI CTCTTC 2 cut(s) 102, 895
Ecl136II GAGCTC 1 cut(s) 824
Eco130I CCWWGG 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 826
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 839
Eco53kI GAGCTC 1 cut(s) 824
Eco72I CACGTG 2 cut(s) 375, 861
Eco81I CCTNAGG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 824
EcoO109I RGGNCCY 1 cut(s) 990
EcoRI GAATTC 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 502
EcoT22I ATGCAT 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 6 cut(s) 158, 308, 616, 740, 769, 792
FalI AAGNNNNNCTT 4 cut(s) 65, 97, 558, 590
FaqI GGGAC 1 cut(s) 631
FatI CATG 6 cut(s) 154, 304, 612, 736, 765, 788
FokI GGATG 2 cut(s) 358, 761
FriOI GRGCYC 1 cut(s) 826
FspBI CTAG 6 cut(s) 101, 326, 557, 728, 819, 987
GlaI GCGC 4 cut(s) 212, 496, 511, 654
GsaI CCCAGC 1 cut(s) 653
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 3 cut(s) 507, 939, 991
HapII CCGG 5 cut(s) 88, 428, 483, 513, 827
HgaI GACGC 2 cut(s) 146, 965
HhaI GCGC 4 cut(s) 213, 497, 512, 655
Hin1II CATG 6 cut(s) 158, 308, 616, 740, 769, 792
Hin6I GCGC 4 cut(s) 211, 495, 510, 653
HinP1I GCGC 4 cut(s) 211, 495, 510, 653
HinfI GANTC 2 cut(s) 149, 724
HpaII CCGG 5 cut(s) 88, 428, 483, 513, 827
HphI GGTGA 4 cut(s) 116, 248, 659, 965
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 4 cut(s) 43, 342, 462, 760
Hpy188III TCNNGA 2 cut(s) 13, 854
Hpy8I GTNNAC 1 cut(s) 219
HpyAV CCTTC 2 cut(s) 67, 278
HpyCH4IV ACGT 2 cut(s) 374, 860
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 2 cut(s) 374, 860
Hsp92II CATG 6 cut(s) 158, 308, 616, 740, 769, 792
HspAI GCGC 4 cut(s) 211, 495, 510, 653
KpnI GGTACC 1 cut(s) 489
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Kzo9I GATC 4 cut(s) 307, 414, 664, 850
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 3 cut(s) 267, 333, 829
Lsp1109I GCAGC 5 cut(s) 286, 289, 332, 898, 920
LweI GCATC 2 cut(s) 171, 739
MaeI CTAG 6 cut(s) 101, 326, 557, 728, 819, 987
MaeII ACGT 2 cut(s) 374, 860
MaeIII GTNAC 4 cut(s) 236, 830, 863, 953
MalI GATC 4 cut(s) 309, 416, 666, 852
MboI GATC 4 cut(s) 307, 414, 664, 850
MboII GAAGA 4 cut(s) 119, 722, 815, 882
MfeI CAATTG 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 221, 826
MluCI AATT 4 cut(s) 176, 188, 538, 627
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 911
MspI CCGG 5 cut(s) 88, 428, 483, 513, 827
MspR9I CCNGG 2 cut(s) 228, 828
MunI CAATTG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 2 cut(s) 495, 510
MwoI GCNNNNNNNGC 1 cut(s) 443
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 1 cut(s) 828
NdeII GATC 4 cut(s) 307, 414, 664, 850
NgoMIV GCCGGC 1 cut(s) 87
NlaIII CATG 6 cut(s) 158, 308, 616, 740, 769, 792
NlaIV GGNNCC 2 cut(s) 487, 813
NmuCI GTSAC 3 cut(s) 236, 863, 953
NsiI ATGCAT 1 cut(s) 120
NspI RCATGY 2 cut(s) 616, 792
PaeI GCATGC 1 cut(s) 616
PaqCI CACCTGC 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 102
PdiI GCCGGC 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 1 cut(s) 724
PflMI CCANNNNNTGG 2 cut(s) 193, 233
PleI GAGTC 1 cut(s) 143
PmaCI CACGTG 2 cut(s) 375, 861
PmlI CACGTG 2 cut(s) 375, 861
PpsI GAGTC 1 cut(s) 143
Ppu21I YACGTR 2 cut(s) 375, 861
PsiI TTATAA 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 826
Psp6I CCWGG 1 cut(s) 226
PspCI CACGTG 2 cut(s) 375, 861
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 487, 813
PspPI GGNCC 3 cut(s) 839, 937, 990
PvuII CAGCTG 1 cut(s) 911
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
SacI GAGCTC 1 cut(s) 826
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 452
Sau3AI GATC 4 cut(s) 307, 414, 664, 850
Sau96I GGNCC 3 cut(s) 839, 937, 990
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 228, 828
SduI GDGCHC 2 cut(s) 221, 826
SfaNI GCATC 2 cut(s) 171, 739
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 839
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SphI GCATGC 1 cut(s) 616
Sse9I AATT 4 cut(s) 176, 188, 538, 627
SsiI CCGC 6 cut(s) 208, 352, 425, 434, 508, 925
SspMI CTAG 6 cut(s) 101, 326, 557, 728, 819, 987
SstI GAGCTC 1 cut(s) 826
StyD4I CCNGG 2 cut(s) 226, 826
StyI CCWWGG 1 cut(s) 502
TaiI ACGT 2 cut(s) 377, 863
TaqI TCGA 2 cut(s) 949, 975
TasI AATT 4 cut(s) 176, 188, 538, 627
TauI GCSGC 5 cut(s) 211, 427, 437, 510, 927
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 2 cut(s) 394, 910
TseFI GTSAC 3 cut(s) 236, 863, 953
TseI GCWGC 5 cut(s) 274, 277, 320, 908, 911
Tsp45I GTSAC 3 cut(s) 236, 863, 953
TspDTI ATGAA 5 cut(s) 362, 576, 590, 620, 723
TspRI CASTG 2 cut(s) 394, 910
Van91I CCANNNNNTGG 2 cut(s) 193, 233
VneI GTGCAC 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 1 cut(s) 627
XceI RCATGY 2 cut(s) 616, 792
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 6 cut(s) 101, 326, 557, 728, 819, 987
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.