RchiOBHm_Chr5g0043861

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015576
Physical Location & Seq
Forward (+)
38931150 .. 38932538
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32209

Sequence Viewer

Length: 978 bp
ATGCAGTTGAATCCATCGGTTACACTTACACACCCAAAGCAAGAACCTAGCTCTCTGCCTCCCTCCCACGTAGTGGATTCATGGCGCATGCATACCTTTCTCTCCTTCCACGGGTCACCAAACAACTCATCCATCTACCACCTGCTACTCTATGACACAGATACGCCGGAGCAATGCCGGGAGCGCCGCCATCGAAGAATCCTGATGAGGCGCTCGAGGTGGTGCTGTTGCGGCCAGCACTTTCACCGCCAGCTGAGTTCATACCGGACTAATTACACTATGACCACTCATGAAATGCCGCAACACCGGAATCCAATGCCCGATTTCGGCAAGTTTTCACTTATAAGGCGTCGTTCGGAGAGCATTATTGACGATACCTTATTTGTGAAGGAGGACTTCTGCCGGCTCGAACTTCTAGGTGGACAGCCTATGCATTTCTTTGCTGTCTTTGATGCTCAAGGAGACCCTCATGTGTCCACGCTGTGCAAACAATTGATGCACCAATGCGTGGCGGCGGAGCTGCGGCGCGTGTGCAGCACTCCAGGGCTTGGTGAGAACTTGAGCTTGGGTTTGGAAACGGGAAGCGAGCAGCAGGAAGGGGAGGAGGCCAAGTGGCATGATCTGGTGCGAACAGCCCTAGAGAGGAGCTTTCAGAGGATGAACCGTCTCAGGCAACACACTTGCACGTGTGGGAACATTACTGATGATTGCAGGTGTGGATTCATGATCCTCACGCCGCCAGTTGCGGCTGTTGTGGCAATCTTAACAGCTCGGAATATTGTCATTGCTAACTCCGGTACCTCACGCGCCGTCCTTGGTCGTGCCGGGAGTTCTTTACCACTCTTTGATAATTCCAAGGTAACGTCAACTTTTTCTAGAAAAATTTGCTACTCTGAGAAGCATGACAGCTTCCAAGTCGGTCATTTTAACCTTTTATTAGATGCAATTGCTGAAATTTTCATTGCATCACATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

325

Amino Acids

37.0

Weight (kDa)

8.43

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24380
malus_domestica MD01G1191100.v1.1
prunus_persica Prupe.2G285600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043861 RchiOBHm_Chr5g0043871
rosa_laevigata RLG00000034220
rosa_multiflora Rmu_co8273823.1_g000001 Rmu_sc0009227.1_g000016 Rmu_sc0010851.1_g000002
rosa_roxburghii Rroxscaffold_1G00037190
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292900 Rh5BG301000 Rh5CG328600 Rh5DG309900
rosa_wichuraiana Rw5G027160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AarI CACCTGC 2 cut(s) 150, 702
Acc36I ACCTGC 2 cut(s) 150, 702
Acc65I GGTACC 1 cut(s) 797
AccB1I GGYRCC 1 cut(s) 797
AccB7I CCANNNNNTGG 3 cut(s) 73, 508, 548
AccII CGCG 2 cut(s) 528, 807
AciI CCGC 9 cut(s) 187, 231, 247, 299, 512, 515, 523, 737, 746
AclWI GGATC 1 cut(s) 721
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 2 cut(s) 882, 954
AcvI CACGTG 1 cut(s) 687
AcyI GRCGYC 1 cut(s) 349
AdeI CACNNNGTG 2 cut(s) 73, 483
AfaI GTAC 1 cut(s) 799
AfiI CCNNNNNNNGG 6 cut(s) 73, 111, 326, 508, 548, 642
AflIII ACRYGT 1 cut(s) 686
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 8 cut(s) 51, 253, 520, 564, 648, 770, 909, 975
AluI AGCT 8 cut(s) 51, 253, 520, 564, 648, 770, 909, 975
Alw26I GTCTC 2 cut(s) 456, 671
AlwI GGATC 1 cut(s) 721
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 2 cut(s) 232, 606
ApeKI GCWGC 3 cut(s) 520, 534, 589
ApoI RAATTY 2 cut(s) 882, 954
Asp718I GGTACC 1 cut(s) 797
AspLEI GCGC 5 cut(s) 87, 186, 213, 528, 809
AsuC2I CCSGG 2 cut(s) 179, 826
AsuHPI GGTGA 3 cut(s) 108, 236, 563
AvaI CYCGRG 1 cut(s) 214
BaeI ACNNNNGTAYC 2 cut(s) 781, 814
BanI GGYRCC 1 cut(s) 797
BbrPI CACGTG 1 cut(s) 687
BbvI GCAGC 3 cut(s) 507, 546, 601
BccI CCATC 3 cut(s) 22, 140, 198
BceAI ACGGC 1 cut(s) 794
BciT130I CCWGG 1 cut(s) 543
BcnI CCSGG 2 cut(s) 179, 826
BcoDI GTCTC 2 cut(s) 456, 671
BfaI CTAG 4 cut(s) 48, 416, 638, 876
BfoI RGCGCY 2 cut(s) 187, 214
BfuAI ACCTGC 2 cut(s) 150, 702
Bme1390I CCNGG 3 cut(s) 179, 543, 826
BmeT110I CYCGRG 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 799
BmrFI CCNGG 3 cut(s) 179, 543, 826
BmsI GCATC 4 cut(s) 442, 486, 931, 974
BpmI CTGGAG 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 441, 580
BpuMI CCSGG 2 cut(s) 179, 826
BsaAI YACGTR 2 cut(s) 70, 687
BsaHI GRCGYC 1 cut(s) 349
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 109, 542, 814, 855
BsaWI WCCGGW 3 cut(s) 264, 306, 794
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 6 cut(s) 73, 111, 326, 508, 548, 642
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 740
Bse3DI GCAATG 3 cut(s) 179, 783, 960
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 4 cut(s) 109, 542, 814, 855
BseGI GGATG 2 cut(s) 128, 663
BseLI CCNNNNNNNGG 6 cut(s) 73, 111, 326, 508, 548, 642
BseMI GCAATG 3 cut(s) 179, 783, 960
BseMII CTCAG 3 cut(s) 245, 682, 885
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 2 cut(s) 617, 658
BseXI GCAGC 3 cut(s) 507, 546, 601
BsgI GTGCAG 1 cut(s) 553
Bsh1236I CGCG 2 cut(s) 528, 807
BshFI GGCC 2 cut(s) 234, 608
BshNI GGYRCC 1 cut(s) 797
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 7 cut(s) 167, 178, 265, 307, 403, 795, 825
BslI CCNNNNNNNGG 6 cut(s) 73, 111, 326, 508, 548, 642
BsmAI GTCTC 2 cut(s) 456, 671
BsmBI CGTCTC 1 cut(s) 671
BsnI GGCC 2 cut(s) 234, 608
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 214
Bsp143I GATC 2 cut(s) 619, 726
BspACI CCGC 9 cut(s) 187, 231, 247, 299, 512, 515, 523, 737, 746
BspANI GGCC 2 cut(s) 234, 608
BspCNI CTCAG 3 cut(s) 246, 681, 886
BspFNI CGCG 2 cut(s) 528, 807
BspHI TCATGA 2 cut(s) 289, 723
BspLI GGNNCC 1 cut(s) 799
BspMI ACCTGC 2 cut(s) 150, 702
BspPI GGATC 1 cut(s) 721
BspT107I GGYRCC 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 456
BsrDI GCAATG 3 cut(s) 179, 783, 960
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 1 cut(s) 740
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 4 cut(s) 109, 542, 814, 855
BssMI GATC 2 cut(s) 619, 726
BssNI GRCGYC 1 cut(s) 349
BssT1I CCWWGG 2 cut(s) 814, 855
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 1 cut(s) 665
BstACI GRCGYC 1 cut(s) 349
BstBAI YACGTR 2 cut(s) 70, 687
BstC8I GCNNGC 5 cut(s) 89, 236, 251, 404, 587
BstDEI CTNAG 3 cut(s) 254, 668, 894
BstDSI CCRYGG 1 cut(s) 109
BstEII GGTNACC 1 cut(s) 114
BstF5I GGATG 2 cut(s) 128, 663
BstFNI CGCG 2 cut(s) 528, 807
BstH2I RGCGCY 2 cut(s) 187, 214
BstHHI GCGC 5 cut(s) 87, 186, 213, 528, 809
BstKTI GATC 2 cut(s) 622, 729
BstMAI GTCTC 2 cut(s) 456, 671
BstMBI GATC 2 cut(s) 619, 726
BstMWI GCNNNNNNNGC 4 cut(s) 183, 231, 534, 755
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 91
BstPI GGTNACC 1 cut(s) 114
BstSCI CCNGG 3 cut(s) 177, 541, 824
BstUI CGCG 2 cut(s) 528, 807
BstV1I GCAGC 3 cut(s) 507, 546, 601
BsuRI GGCC 2 cut(s) 234, 608
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 2 cut(s) 128, 663
BveI ACCTGC 2 cut(s) 150, 702
Cac8I GCNNGC 5 cut(s) 89, 236, 251, 404, 587
CciI TCATGA 2 cut(s) 289, 723
CfoI GCGC 5 cut(s) 87, 186, 213, 528, 809
Cfr10I RCCGGY 1 cut(s) 402
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 798
CviAII CATG 7 cut(s) 81, 88, 290, 470, 617, 724, 902
CviQI GTAC 1 cut(s) 798
DdeI CTNAG 3 cut(s) 254, 668, 894
DpnI GATC 2 cut(s) 621, 728
DpnII GATC 2 cut(s) 619, 726
DraIII CACNNNGTG 2 cut(s) 73, 483
EaeI YGGCCR 1 cut(s) 232
EciI GGCGGA 1 cut(s) 530
Eco130I CCWWGG 2 cut(s) 814, 855
Eco31I GGTCTC 1 cut(s) 456
Eco72I CACGTG 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 214
Eco91I GGTNACC 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 814, 855
EcoT22I ATGCAT 2 cut(s) 93, 435
ErhI CCWWGG 2 cut(s) 814, 855
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 7 cut(s) 84, 91, 293, 473, 620, 727, 905
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FatI CATG 7 cut(s) 80, 87, 289, 469, 616, 723, 901
FokI GGATG 2 cut(s) 115, 670
FspBI CTAG 4 cut(s) 48, 416, 638, 876
GlaI GCGC 5 cut(s) 86, 185, 212, 527, 808
GsuI CTGGAG 1 cut(s) 525
HaeII RGCGCY 2 cut(s) 187, 214
HaeIII GGCC 2 cut(s) 234, 608
HapII CCGG 7 cut(s) 167, 178, 265, 307, 403, 795, 825
HgaI GACGC 1 cut(s) 338
HhaI GCGC 5 cut(s) 87, 186, 213, 528, 809
Hin1I GRCGYC 1 cut(s) 349
Hin1II CATG 7 cut(s) 84, 91, 293, 473, 620, 727, 905
Hin6I GCGC 5 cut(s) 85, 184, 211, 526, 807
HinP1I GCGC 5 cut(s) 85, 184, 211, 526, 807
HincII GTYRAC 1 cut(s) 867
HindII GTYRAC 1 cut(s) 867
HinfI GANTC 5 cut(s) 10, 77, 198, 310, 720
HpaII CCGG 7 cut(s) 167, 178, 265, 307, 403, 795, 825
HphI GGTGA 3 cut(s) 108, 236, 563
Hpy166II GTNNAC 3 cut(s) 422, 477, 867
Hpy188I TCNGA 4 cut(s) 358, 654, 774, 895
Hpy188III TCNNGA 4 cut(s) 202, 290, 724, 876
Hpy8I GTNNAC 3 cut(s) 422, 477, 867
Hpy99I CGWCG 1 cut(s) 354
HpyAV CCTTC 3 cut(s) 115, 382, 590
HpyCH4III ACNGT 1 cut(s) 665
HpyCH4IV ACGT 3 cut(s) 69, 686, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 231, 534, 755
HpyF3I CTNAG 3 cut(s) 254, 668, 894
HpySE526I ACGT 3 cut(s) 69, 686, 863
Hsp92I GRCGYC 1 cut(s) 349
Hsp92II CATG 7 cut(s) 84, 91, 293, 473, 620, 727, 905
HspAI GCGC 5 cut(s) 85, 184, 211, 526, 807
KpnI GGTACC 1 cut(s) 801
KroI GCCGGC 1 cut(s) 402
KroNI GCCGGC 1 cut(s) 404
Kzo9I GATC 2 cut(s) 619, 726
LmnI GCTCC 4 cut(s) 169, 181, 517, 645
Lsp1109I GCAGC 3 cut(s) 507, 546, 601
LweI GCATC 4 cut(s) 442, 486, 931, 974
MaeI CTAG 4 cut(s) 48, 416, 638, 876
MaeII ACGT 3 cut(s) 69, 686, 863
MaeIII GTNAC 3 cut(s) 19, 114, 859
MalI GATC 2 cut(s) 621, 728
MboI GATC 2 cut(s) 619, 726
MboII GAAGA 1 cut(s) 207
MfeI CAATTG 2 cut(s) 491, 945
MluCI AATT 6 cut(s) 271, 491, 850, 882, 945, 954
Mph1103I ATGCAT 2 cut(s) 93, 435
MroNI GCCGGC 1 cut(s) 402
MseI TTAA 2 cut(s) 764, 927
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 7 cut(s) 167, 178, 265, 307, 403, 795, 825
MspR9I CCNGG 3 cut(s) 179, 543, 826
MunI CAATTG 2 cut(s) 491, 945
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 2 cut(s) 528, 807
MwoI GCNNNNNNNGC 4 cut(s) 183, 231, 534, 755
NaeI GCCGGC 1 cut(s) 404
NciI CCSGG 2 cut(s) 179, 826
NdeII GATC 2 cut(s) 619, 726
NgoMIV GCCGGC 1 cut(s) 402
NlaIII CATG 7 cut(s) 84, 91, 293, 473, 620, 727, 905
NlaIV GGNNCC 1 cut(s) 799
NmuCI GTSAC 1 cut(s) 114
NsiI ATGCAT 2 cut(s) 93, 435
NspI RCATGY 1 cut(s) 91
PaeI GCATGC 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 214
PagI TCATGA 2 cut(s) 289, 723
PaqCI CACCTGC 2 cut(s) 150, 702
PdiI GCCGGC 1 cut(s) 404
PfeI GAWTC 5 cut(s) 10, 77, 198, 310, 720
PflMI CCANNNNNTGG 3 cut(s) 73, 508, 548
PmaCI CACGTG 1 cut(s) 687
PmlI CACGTG 1 cut(s) 687
Ppu21I YACGTR 2 cut(s) 70, 687
PsiI TTATAA 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 541
PspCI CACGTG 1 cut(s) 687
PspEI GGTNACC 1 cut(s) 114
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 1 cut(s) 799
PspXI VCTCGAGB 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 253
RsaI GTAC 1 cut(s) 799
RsaNI GTAC 1 cut(s) 798
SaqAI TTAA 2 cut(s) 764, 927
Sau3AI GATC 2 cut(s) 619, 726
ScrFI CCNGG 3 cut(s) 179, 543, 826
SfaNI GCATC 4 cut(s) 442, 486, 931, 974
Sfr274I CTCGAG 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 214
SmlI CTYRAG 3 cut(s) 214, 456, 559
SmoI CTYRAG 3 cut(s) 214, 456, 559
SphI GCATGC 1 cut(s) 91
Sse9I AATT 6 cut(s) 271, 491, 850, 882, 945, 954
SsiI CCGC 9 cut(s) 187, 231, 247, 299, 512, 515, 523, 737, 746
SspI AATATT 1 cut(s) 778
SspMI CTAG 4 cut(s) 48, 416, 638, 876
StyD4I CCNGG 3 cut(s) 177, 541, 824
StyI CCWWGG 2 cut(s) 814, 855
TaaI ACNGT 1 cut(s) 665
TaiI ACGT 3 cut(s) 72, 689, 866
TaqI TCGA 3 cut(s) 193, 215, 408
TaqII GACCGA 1 cut(s) 908
TasI AATT 6 cut(s) 271, 491, 850, 882, 945, 954
TauI GCSGC 7 cut(s) 189, 234, 301, 515, 526, 739, 749
TfiI GAWTC 5 cut(s) 10, 77, 198, 310, 720
Tru1I TTAA 2 cut(s) 764, 927
Tru9I TTAA 2 cut(s) 764, 927
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 3 cut(s) 520, 534, 589
Tsp45I GTSAC 1 cut(s) 114
TspDTI ATGAA 6 cut(s) 69, 249, 306, 674, 712, 949
Van91I CCANNNNNTGG 3 cut(s) 73, 508, 548
XapI RAATTY 2 cut(s) 882, 954
XbaI TCTAGA 1 cut(s) 875
XceI RCATGY 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 214
XspI CTAG 4 cut(s) 48, 416, 638, 876
Zsp2I ATGCAT 2 cut(s) 93, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.