Rroxscaffold_1G00037190

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015576
Physical Location & Seq
Reverse (-)
54270673 .. 54272775
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00037190.1

Sequence Viewer

Length: 1107 bp
ATGAGGCGCTCGAGGTGGTGCTGTTGCGGCCAGCACTTTCACCGCCAGCTGAGTTCATACCGGATTAATTACACTATTACCACTCATGAAATGCCGCAACACCGGAATCCAATGCCCGATTTCGGCAAGTTTTCACTTATAAGGCATCGTTCGGAGAGCATTATTGACGATACCTTATTTGTGAAGGAGGACTTCTGCCGGCTCGAACTTCTAGGTGGACAGCCTATGCATTTCTTTGCTGTCTTTGATGCTCAAGGAGACCCTCATGTGTCCACGCTGTGCAAACAATTGATGCACCAATGCGTGGCGGAGGAGCTGCGGCGCGTGTGCAGCACTCCAGGGCTTGGTGAGAACTTGAGCTTGGGTTTGGAAATGGGAAGTCAGCAGCAGGAAGGGGAGGAGGCCAAGTGGCATGATTTGGTGCGAACAGCCCTAGAGAGGAGCTTTCAGAGGATGAACCCTTTCAGGCAACACACTTGCACGTGTGGGAACATTACTGATGATTGCAGGTGTGGATTCATGATCCTCACGCCGCCAGTTGCGGCTGTTGTGGCAATCTTAACAGCTCGGAAAATTGTCATTGCCAACTCCGGTACCTCACGCGCCGTCCTTGGCAGTGCCGGGAGTTCTTTACCACTTTTGGATAATTCCAAGCCTGAAAGACTAGATGCACAAGAAAGGCTTCGGGCAGTAGATGGTCGGGTTTTCCATCACAACGGCATGCGTGTATATGGAATTCTTAACATGTCTCATTCTGTAGTGCAAACAGGGGATCACCACCTTTTGAATATTTCCATCACAGAAAGAGAGGAAAATGAAGATGAATGCTTAATTCTAGCCAATCATGGTATTTGGGATACTATATCAGATGACATGGCTTGCAGGGTAGCTAGAACATGTCTCACATTTGAAGATGGGGAAGCTGCTAGAGCTCCAGCCAACAATGGTCATCTTTATGGTCCAGACACATGCGATGATGAGACAAACATGTTTTTCTCTTCCAAAACCAACAGTGCAGCTGCAATACTCTGCCGCCTCGCTTTGGGCCGTGGAAGTCAAGGCGATATAAGTGTCATAGTTGTTGATTTAATGGTTAGGTCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

368

Amino Acids

41.15

Weight (kDa)

6.18

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 58 - 307 1.4e-19 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24380
malus_domestica MD01G1191100.v1.1
prunus_persica Prupe.2G285600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043861 RchiOBHm_Chr5g0043871
rosa_laevigata RLG00000034220
rosa_multiflora Rmu_co8273823.1_g000001 Rmu_sc0009227.1_g000016 Rmu_sc0010851.1_g000002
rosa_roxburghii Rroxscaffold_1G00037190
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292900 Rh5BG301000 Rh5CG328600 Rh5DG309900
rosa_wichuraiana Rw5G027160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AarI CACCTGC 1 cut(s) 498
Acc36I ACCTGC 1 cut(s) 498
Acc65I GGTACC 1 cut(s) 593
AccB1I GGYRCC 1 cut(s) 593
AccB7I CCANNNNNTGG 2 cut(s) 304, 344
AccII CGCG 2 cut(s) 324, 603
AciI CCGC 8 cut(s) 27, 43, 95, 308, 319, 533, 542, 1033
AclWI GGATC 2 cut(s) 517, 780
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 1 cut(s) 735
AcvI CACGTG 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 279
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 5 cut(s) 122, 304, 344, 438, 1042
AflIII ACRYGT 4 cut(s) 482, 744, 896, 987
AgsI TTSAA 2 cut(s) 787, 911
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 9 cut(s) 49, 316, 360, 444, 566, 890, 923, 932, 1019
AluI AGCT 9 cut(s) 49, 316, 360, 444, 566, 890, 923, 932, 1019
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 4 cut(s) 252, 753, 905, 974
AlwI GGATC 2 cut(s) 517, 780
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 3 cut(s) 28, 402, 1045
ApeKI GCWGC 6 cut(s) 316, 330, 385, 923, 1016, 1019
ApoI RAATTY 1 cut(s) 735
AseI ATTAAT 1 cut(s) 66
Asp700I GAANNNNTTC 2 cut(s) 461, 681
Asp718I GGTACC 1 cut(s) 593
AspLEI GCGC 3 cut(s) 9, 324, 605
AspS9I GGNCC 2 cut(s) 959, 1045
AsuC2I CCSGG 1 cut(s) 622
AsuHPI GGTGA 3 cut(s) 32, 359, 767
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 959
BaeI ACNNNNGTAYC 2 cut(s) 577, 610
BanI GGYRCC 1 cut(s) 593
BanII GRGCYC 1 cut(s) 934
BbrPI CACGTG 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 6 cut(s) 303, 342, 397, 910, 1006, 1028
BccI CCATC 4 cut(s) 689, 717, 803, 908
BceAI ACGGC 3 cut(s) 590, 733, 1032
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 850
BcnI CCSGG 1 cut(s) 622
BcoDI GTCTC 4 cut(s) 252, 753, 905, 974
BfaI CTAG 6 cut(s) 212, 434, 665, 836, 891, 927
BfmI CTRYAG 1 cut(s) 756
BfoI RGCGCY 1 cut(s) 10
BfuAI ACCTGC 1 cut(s) 498
BfuI GTATCC 1 cut(s) 850
Bme1390I CCNGG 2 cut(s) 339, 622
Bme18I GGWCC 1 cut(s) 959
BmeT110I CYCGRG 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 959, 1045
BmiI GGNNCC 1 cut(s) 595
BmrFI CCNGG 2 cut(s) 339, 622
BmsI GCATC 4 cut(s) 154, 238, 282, 658
BpmI CTGGAG 2 cut(s) 321, 918
BpuEI CTTGAG 2 cut(s) 237, 376
BpuMI CCSGG 1 cut(s) 622
BsaAI YACGTR 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 338, 610, 1048
BsaWI WCCGGW 3 cut(s) 60, 102, 590
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 5 cut(s) 122, 304, 344, 438, 1042
Bse118I RCCGGY 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 338, 610, 1048
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 5 cut(s) 122, 304, 344, 438, 1042
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 536
BseRI GAGGAG 3 cut(s) 326, 413, 454
BseXI GCAGC 6 cut(s) 303, 342, 397, 910, 1006, 1028
BsgI GTGCAG 2 cut(s) 349, 1035
Bsh1236I CGCG 2 cut(s) 324, 603
BshFI GGCC 3 cut(s) 30, 404, 1047
BshNI GGYRCC 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 934
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 5 cut(s) 61, 103, 199, 591, 621
BslI CCNNNNNNNGG 5 cut(s) 122, 304, 344, 438, 1042
BsmAI GTCTC 4 cut(s) 252, 753, 905, 974
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 3 cut(s) 30, 404, 1047
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 934
Bsp143I GATC 2 cut(s) 522, 772
BspACI CCGC 8 cut(s) 27, 43, 95, 308, 319, 533, 542, 1033
BspANI GGCC 3 cut(s) 30, 404, 1047
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 2 cut(s) 324, 603
BspHI TCATGA 2 cut(s) 85, 519
BspLI GGNNCC 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 498
BspPI GGATC 2 cut(s) 517, 780
BspT107I GGYRCC 1 cut(s) 593
BspTNI GGTCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 1 cut(s) 198
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 3 cut(s) 338, 610, 1048
BssMI GATC 2 cut(s) 522, 772
BssT1I CCWWGG 1 cut(s) 610
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 1013
Bst6I CTCTTC 1 cut(s) 1003
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 5 cut(s) 32, 47, 200, 722, 880
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 1048
BstF5I GGATG 1 cut(s) 459
BstFNI CGCG 2 cut(s) 324, 603
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 3 cut(s) 9, 324, 605
BstKTI GATC 2 cut(s) 525, 775
BstMAI GTCTC 4 cut(s) 252, 753, 905, 974
BstMBI GATC 2 cut(s) 522, 772
BstMWI GCNNNNNNNGC 4 cut(s) 27, 330, 551, 929
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 5 cut(s) 724, 748, 900, 972, 991
BstSCI CCNGG 2 cut(s) 337, 620
BstSFI CTRYAG 1 cut(s) 756
BstUI CGCG 2 cut(s) 324, 603
BstV1I GCAGC 6 cut(s) 303, 342, 397, 910, 1006, 1028
BsuI GTATCC 1 cut(s) 850
BsuRI GGCC 3 cut(s) 30, 404, 1047
BtgI CCRYGG 1 cut(s) 1048
BtgZI GCGATG 1 cut(s) 987
BtsCI GGATG 1 cut(s) 459
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 2 cut(s) 622, 1018
BveI ACCTGC 1 cut(s) 498
Cac8I GCNNGC 5 cut(s) 32, 47, 200, 722, 880
CciI TCATGA 2 cut(s) 85, 519
CfoI GCGC 3 cut(s) 9, 324, 605
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 959, 1045
Csp6I GTAC 1 cut(s) 594
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 1 cut(s) 50
DpnI GATC 2 cut(s) 524, 774
DpnII GATC 2 cut(s) 522, 772
DraIII CACNNNGTG 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 1003
EarI CTCTTC 1 cut(s) 1003
EciI GGCGGA 1 cut(s) 323
Ecl136II GAGCTC 1 cut(s) 932
Eco130I CCWWGG 1 cut(s) 610
Eco24I GRGCYC 1 cut(s) 934
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 959
Eco53kI GAGCTC 1 cut(s) 932
Eco72I CACGTG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 932
EcoRI GAATTC 1 cut(s) 735
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 610
EcoT22I ATGCAT 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 934
ErhI CCWWGG 1 cut(s) 610
FalI AAGNNNNNCTT 4 cut(s) 176, 208, 666, 698
FokI GGATG 1 cut(s) 466
FriOI GRGCYC 1 cut(s) 934
FspBI CTAG 6 cut(s) 212, 434, 665, 836, 891, 927
GlaI GCGC 3 cut(s) 8, 323, 604
GsuI CTGGAG 2 cut(s) 321, 918
HaeII RGCGCY 1 cut(s) 10
HaeIII GGCC 3 cut(s) 30, 404, 1047
HapII CCGG 5 cut(s) 61, 103, 199, 591, 621
HhaI GCGC 3 cut(s) 9, 324, 605
Hin6I GCGC 3 cut(s) 7, 322, 603
HinP1I GCGC 3 cut(s) 7, 322, 603
HinfI GANTC 2 cut(s) 106, 516
HpaII CCGG 5 cut(s) 61, 103, 199, 591, 621
HphI GGTGA 3 cut(s) 32, 359, 767
Hpy166II GTNNAC 2 cut(s) 218, 273
Hpy188I TCNGA 4 cut(s) 154, 450, 570, 868
Hpy188III TCNNGA 3 cut(s) 86, 520, 962
Hpy8I GTNNAC 2 cut(s) 218, 273
HpyAV CCTTC 2 cut(s) 178, 386
HpyCH4III ACNGT 1 cut(s) 1013
HpyCH4IV ACGT 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 330, 551, 929
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 482
HspAI GCGC 3 cut(s) 7, 322, 603
KpnI GGTACC 1 cut(s) 597
KroI GCCGGC 1 cut(s) 198
KroNI GCCGGC 1 cut(s) 200
Kzo9I GATC 2 cut(s) 522, 772
LmnI GCTCC 3 cut(s) 313, 441, 937
Lsp1109I GCAGC 6 cut(s) 303, 342, 397, 910, 1006, 1028
LweI GCATC 4 cut(s) 154, 238, 282, 658
MaeI CTAG 6 cut(s) 212, 434, 665, 836, 891, 927
MaeII ACGT 1 cut(s) 482
MalI GATC 2 cut(s) 524, 774
MboI GATC 2 cut(s) 522, 772
MboII GAAGA 3 cut(s) 830, 923, 990
MfeI CAATTG 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 934
MluCI AATT 6 cut(s) 67, 287, 573, 646, 735, 831
Mph1103I ATGCAT 1 cut(s) 231
MroNI GCCGGC 1 cut(s) 198
MroXI GAANNNNTTC 2 cut(s) 461, 681
MseI TTAA 5 cut(s) 66, 560, 741, 830, 1088
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 2 cut(s) 49, 1019
MspI CCGG 5 cut(s) 61, 103, 199, 591, 621
MspR9I CCNGG 2 cut(s) 339, 622
MunI CAATTG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 2 cut(s) 324, 603
MwoI GCNNNNNNNGC 4 cut(s) 27, 330, 551, 929
NaeI GCCGGC 1 cut(s) 200
NciI CCSGG 1 cut(s) 622
NdeII GATC 2 cut(s) 522, 772
NgoMIV GCCGGC 1 cut(s) 198
NlaIV GGNNCC 1 cut(s) 595
NsiI ATGCAT 1 cut(s) 231
NspI RCATGY 5 cut(s) 724, 748, 900, 972, 991
PaeI GCATGC 1 cut(s) 724
PaeR7I CTCGAG 1 cut(s) 10
PagI TCATGA 2 cut(s) 85, 519
PaqCI CACCTGC 1 cut(s) 498
PciI ACATGT 3 cut(s) 744, 896, 987
PctI GAATGC 1 cut(s) 830
PdiI GCCGGC 1 cut(s) 200
PdmI GAANNNNTTC 2 cut(s) 461, 681
PfeI GAWTC 2 cut(s) 106, 516
PflMI CCANNNNNTGG 2 cut(s) 304, 344
PmaCI CACGTG 1 cut(s) 483
PmlI CACGTG 1 cut(s) 483
Ppu21I YACGTR 1 cut(s) 483
PscI ACATGT 3 cut(s) 744, 896, 987
PshBI ATTAAT 1 cut(s) 66
PsiI TTATAA 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 934
Psp6I CCWGG 1 cut(s) 337
PspCI CACGTG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 595
PspPI GGNCC 2 cut(s) 959, 1045
PspXI VCTCGAGB 1 cut(s) 10
PvuII CAGCTG 2 cut(s) 49, 1019
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 1 cut(s) 954
SacI GAGCTC 1 cut(s) 934
SaqAI TTAA 5 cut(s) 66, 560, 741, 830, 1088
Sau3AI GATC 2 cut(s) 522, 772
Sau96I GGNCC 2 cut(s) 959, 1045
ScrFI CCNGG 2 cut(s) 339, 622
SduI GDGCHC 1 cut(s) 934
SfaNI GCATC 4 cut(s) 154, 238, 282, 658
SfcI CTRYAG 1 cut(s) 756
Sfr274I CTCGAG 1 cut(s) 10
SinI GGWCC 1 cut(s) 959
SlaI CTCGAG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 3 cut(s) 10, 252, 355
SmoI CTYRAG 3 cut(s) 10, 252, 355
SphI GCATGC 1 cut(s) 724
Sse9I AATT 6 cut(s) 67, 287, 573, 646, 735, 831
SsiI CCGC 8 cut(s) 27, 43, 95, 308, 319, 533, 542, 1033
SspI AATATT 1 cut(s) 790
SspMI CTAG 6 cut(s) 212, 434, 665, 836, 891, 927
SstI GAGCTC 1 cut(s) 934
StyD4I CCNGG 2 cut(s) 337, 620
StyI CCWWGG 1 cut(s) 610
TaaI ACNGT 1 cut(s) 1013
TaiI ACGT 1 cut(s) 485
TaqI TCGA 3 cut(s) 11, 204, 1100
TasI AATT 6 cut(s) 67, 287, 573, 646, 735, 831
TauI GCSGC 6 cut(s) 30, 97, 322, 535, 545, 1035
TfiI GAWTC 2 cut(s) 106, 516
Tru1I TTAA 5 cut(s) 66, 560, 741, 830, 1088
Tru9I TTAA 5 cut(s) 66, 560, 741, 830, 1088
TscAI CASTG 2 cut(s) 622, 1018
TseI GCWGC 6 cut(s) 316, 330, 385, 923, 1016, 1019
TspDTI ATGAA 6 cut(s) 45, 102, 470, 508, 831, 837
TspRI CASTG 2 cut(s) 622, 1018
Van91I CCANNNNNTGG 2 cut(s) 304, 344
VpaK11BI GGWCC 1 cut(s) 959
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 735
XceI RCATGY 5 cut(s) 724, 748, 900, 972, 991
XhoI CTCGAG 1 cut(s) 10
XmnI GAANNNNTTC 2 cut(s) 461, 681
XspI CTAG 6 cut(s) 212, 434, 665, 836, 891, 927
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.