Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009227.1

Orthogroup ID

OG0015576

Physical Location & Seq

Genomic Coordinates Reverse (-)

58889 .. 59266

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009227.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgctaaatttgattgcagtgcaaacaggggatcactaccttctgaatatttccatcacagaaagagagggaaatgaagatgaatgcttgattctagccaatcatggtatttgggatgctatatcagatgacatggcttgcagggtagctagaacatgtctcacatttgaagatggggaagctgctagagctcctgccaaagatggtcgtctttatggtccagacacatgtgatcatgagacgaacatgtttttctcttccaaaaccaacagtgcagctgcaatactctgccgcctcgctttgggccgtggcagtcgaggcgatataagtgtcattgttgtcgatttaatggttaggtcgaagtcaaggcaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

125

Amino Acids

13.7

Weight (kDa)

5.28

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24380
malus_domestica	MD01G1191100.v1.1
prunus_persica	Prupe.2G285600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0043861 RchiOBHm_Chr5g0043871
rosa_laevigata	RLG00000034220
rosa_multiflora	Rmu_co8273823.1_g000001 Rmu_sc0009227.1_g000016 Rmu_sc0010851.1_g000002
rosa_roxburghii	Rroxscaffold_1G00037190
rosa_rugosa	Rorug05G0208900
rosa_samantha	Rh5AG292900 Rh5BG301000 Rh5CG328600 Rh5DG309900
rosa_wichuraiana	Rw5G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	3 cut(s)	155, 227, 246
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	4 cut(s)	149, 182, 191, 278
AluI	AGCT	4 cut(s)	149, 182, 191, 278
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	164, 233
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	3 cut(s)	182, 275, 278
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	218, 304
AvaII	GGWCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	169, 265, 287
BccI	CCATC	3 cut(s)	62, 167, 197
BceAI	ACGGC	1 cut(s)	291
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	164, 233
BfaI	CTAG	3 cut(s)	95, 150, 186
BisI	GCNGC	4 cut(s)	183, 276, 279, 292
BlsI	GCNGC	4 cut(s)	184, 277, 280, 293
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	218, 304
BmsI	GCATC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	169, 265, 287
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	164, 233
BsmBI	CGTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	31, 232
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	235
BspPI	GGATC	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	2 cut(s)	31, 232
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	34, 235
BstMAI	GTCTC	2 cut(s)	164, 233
BstMBI	GATC	2 cut(s)	31, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 318
BstNSI	RCATGY	3 cut(s)	159, 231, 250
BstV1I	GCAGC	3 cut(s)	169, 265, 287
BsuRI	GGCC	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 277
Cac8I	GCNNGC	1 cut(s)	139
CciI	TCATGA	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	218, 304
CviAII	CATG	6 cut(s)	104, 133, 156, 228, 236, 247
CviJI	RGCY	7 cut(s)	98, 137, 149, 182, 191, 278, 306
CviKI_1	RGCY	7 cut(s)	98, 137, 149, 182, 191, 278, 306
DpnI	GATC	2 cut(s)	33, 234
DpnII	GATC	2 cut(s)	31, 232
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	6 cut(s)	107, 136, 159, 231, 239, 250
FaiI	YATR	9 cut(s)	105, 122, 134, 157, 216, 229, 237, 248, 326
FatI	CATG	6 cut(s)	103, 132, 155, 227, 235, 246
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	183, 276, 279, 292
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	4 cut(s)	183, 276, 279, 292
FspBI	CTAG	3 cut(s)	95, 150, 186
GluI	GCNGC	4 cut(s)	183, 276, 279, 292
HaeIII	GGCC	1 cut(s)	306
Hin1II	CATG	6 cut(s)	107, 136, 159, 231, 239, 250
HinfI	GANTC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	45, 127
Hpy188III	TCNNGA	2 cut(s)	221, 236
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	5 cut(s)	17, 22, 141, 275, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 318
Hsp92II	CATG	6 cut(s)	107, 136, 159, 231, 239, 250
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	31, 232
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	12, 127, 207, 234
Lsp1109I	GCAGC	3 cut(s)	169, 265, 287
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	3 cut(s)	95, 150, 186
MalI	GATC	2 cut(s)	33, 234
MboI	GATC	2 cut(s)	31, 232
MboII	GAAGA	3 cut(s)	89, 182, 249
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	7
MnlI	CCTC	3 cut(s)	61, 305, 311
MseI	TTAA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	188, 318
NdeII	GATC	2 cut(s)	31, 232
NlaIII	CATG	6 cut(s)	107, 136, 159, 231, 239, 250
NspI	RCATGY	3 cut(s)	159, 231, 250
PagI	TCATGA	1 cut(s)	235
PciI	ACATGT	3 cut(s)	155, 227, 246
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	4 cut(s)	184, 277, 280, 293
PscI	ACATGT	3 cut(s)	155, 227, 246
Psp124BI	GAGCTC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	218, 304
PvuII	CAGCTG	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	4 cut(s)	183, 276, 279, 292
Sau3AI	GATC	2 cut(s)	31, 232
Sau96I	GGNCC	2 cut(s)	218, 304
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	6 cut(s)	42, 151, 184, 193, 280, 359
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	292
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	3 cut(s)	95, 150, 186
SstI	GAGCTC	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	3 cut(s)	316, 342, 359
TasI	AATT	1 cut(s)	7
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	2 cut(s)	24, 277
TseI	GCWGC	3 cut(s)	182, 275, 278
TspDTI	ATGAA	2 cut(s)	90, 96
TspRI	CASTG	2 cut(s)	24, 277
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	3 cut(s)	159, 231, 250
XspI	CTAG	3 cut(s)	95, 150, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.