Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8273823.1

Orthogroup ID

OG0015576

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 820

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8273823.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgccgcaacaccggaatccattgcccgatttcggcaagttttcacttataaggcgtcgttcggagagcattattgacgataccttatttgtgaaggaggacttctgccggctcgaacttctaggtggacagcctatgcatttctttgctgtctttgatgctcaaggagaccctcatgtgtccacgctgtgcaaacaattgatgcaccaatgcgtggcggcggagctgcggcgcgtgtgcagcactccagggcttggtgagaacttgagcttgggtttggaaacgggaagcgagcagcaggaaggggaggaggccaagtggcatgatctggtgcgaacagccctagagaggagctttcagaggatgaaccgtctcaggcaacacacttgcacgtgtgggaacattactgatgattgcaggtgtggattcatgatcctcacgccgccagttgcggctgttgtggcaatcttaacagctcggaatattgtcattgctaactccggtacctcacgcgccgtccttggccgtgccgggagttctttaccactctttgataatgccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

188

Amino Acids

20.84

Weight (kDa)

6.99

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24380
malus_domestica	MD01G1191100.v1.1
prunus_persica	Prupe.2G285600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0043861 RchiOBHm_Chr5g0043871
rosa_laevigata	RLG00000034220
rosa_multiflora	Rmu_co8273823.1_g000001 Rmu_sc0009227.1_g000016 Rmu_sc0010851.1_g000002
rosa_roxburghii	Rroxscaffold_1G00037190
rosa_rugosa	Rorug05G0208900
rosa_samantha	Rh5AG292900 Rh5BG301000 Rh5CG328600 Rh5DG309900
rosa_wichuraiana	Rw5G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AarI	CACCTGC	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	408
Acc65I	GGTACC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	503
AccB7I	CCANNNNNTGG	2 cut(s)	214, 254
AccII	CGCG	2 cut(s)	234, 513
AciI	CCGC	6 cut(s)	5, 218, 221, 229, 443, 452
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	523
AcvI	CACGTG	1 cut(s)	393
AcyI	GRCGYC	1 cut(s)	55
AdeI	CACNNNGTG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	4 cut(s)	32, 214, 254, 348
AflIII	ACRYGT	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	4 cut(s)	226, 270, 354, 476
AluI	AGCT	4 cut(s)	226, 270, 354, 476
Alw26I	GTCTC	2 cut(s)	162, 377
AlwI	GGATC	1 cut(s)	427
AoxI	GGCC	2 cut(s)	312, 523
ApeKI	GCWGC	3 cut(s)	226, 240, 295
Asp718I	GGTACC	1 cut(s)	503
AspLEI	GCGC	2 cut(s)	234, 515
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	269
BaeI	ACNNNNGTAYC	2 cut(s)	487, 520
BanI	GGYRCC	1 cut(s)	503
BbrPI	CACGTG	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	213, 252, 307
BceAI	ACGGC	2 cut(s)	500, 510
BciT130I	CCWGG	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	2 cut(s)	162, 377
BfaI	CTAG	2 cut(s)	122, 344
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	8 cut(s)	5, 219, 227, 230, 241, 296, 443, 453
BlsI	GCNGC	8 cut(s)	6, 220, 228, 231, 242, 297, 444, 454
Bme1390I	CCNGG	2 cut(s)	249, 532
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	2 cut(s)	249, 532
BmsI	GCATC	2 cut(s)	148, 192
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	147, 286
BpuMI	CCSGG	1 cut(s)	532
BsaAI	YACGTR	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	248, 520
BsaWI	WCCGGW	2 cut(s)	12, 500
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 214, 254, 348
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	446
Bse3DI	GCAATG	2 cut(s)	20, 489
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	248, 520
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	32, 214, 254, 348
BseMI	GCAATG	2 cut(s)	20, 489
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	2 cut(s)	323, 364
BseXI	GCAGC	3 cut(s)	213, 252, 307
BsgI	GTGCAG	1 cut(s)	259
Bsh1236I	CGCG	2 cut(s)	234, 513
BshFI	GGCC	2 cut(s)	314, 525
BshNI	GGYRCC	1 cut(s)	503
BsiSI	CCGG	4 cut(s)	13, 109, 501, 531
BslI	CCNNNNNNNGG	4 cut(s)	32, 214, 254, 348
BsmAI	GTCTC	2 cut(s)	162, 377
BsmBI	CGTCTC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	314, 525
Bso31I	GGTCTC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	325, 432
BspACI	CCGC	6 cut(s)	5, 218, 221, 229, 443, 452
BspANI	GGCC	2 cut(s)	314, 525
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	2 cut(s)	234, 513
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	162
BsrDI	GCAATG	2 cut(s)	20, 489
BsrFI	RCCGGY	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	446
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	248, 520
BssMI	GATC	2 cut(s)	325, 432
BssNI	GRCGYC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	110, 293
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	2 cut(s)	234, 513
BstHHI	GCGC	2 cut(s)	234, 515
BstKTI	GATC	2 cut(s)	328, 435
BstMAI	GTCTC	2 cut(s)	162, 377
BstMBI	GATC	2 cut(s)	325, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 461
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	247, 530
BstUI	CGCG	2 cut(s)	234, 513
BstV1I	GCAGC	3 cut(s)	213, 252, 307
BsuRI	GGCC	2 cut(s)	314, 525
BtsCI	GGATG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	110, 293
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	2 cut(s)	234, 515
Cfr10I	RCCGGY	1 cut(s)	108
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	3 cut(s)	176, 323, 430
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	2 cut(s)	327, 434
DpnII	GATC	2 cut(s)	325, 432
DraIII	CACNNNGTG	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	162
Eco72I	CACGTG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	3 cut(s)	179, 326, 433
FaiI	YATR	5 cut(s)	50, 137, 177, 324, 431
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	3 cut(s)	175, 322, 429
Fnu4HI	GCNGC	8 cut(s)	5, 219, 227, 230, 241, 296, 443, 453
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	8 cut(s)	5, 219, 227, 230, 241, 296, 443, 453
FspBI	CTAG	2 cut(s)	122, 344
GlaI	GCGC	2 cut(s)	233, 514
GluI	GCNGC	8 cut(s)	5, 219, 227, 230, 241, 296, 443, 453
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	314, 525
HapII	CCGG	4 cut(s)	13, 109, 501, 531
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	234, 515
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	3 cut(s)	179, 326, 433
Hin6I	GCGC	2 cut(s)	232, 513
HinP1I	GCGC	2 cut(s)	232, 513
HinfI	GANTC	2 cut(s)	16, 426
HpaII	CCGG	4 cut(s)	13, 109, 501, 531
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	128, 183
Hpy188I	TCNGA	3 cut(s)	64, 360, 480
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	2 cut(s)	128, 183
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	88, 296
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	6 cut(s)	139, 192, 205, 240, 390, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 461
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	3 cut(s)	179, 326, 433
HspAI	GCGC	2 cut(s)	232, 513
KpnI	GGTACC	1 cut(s)	507
KroI	GCCGGC	1 cut(s)	108
KroNI	GCCGGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	325, 432
LmnI	GCTCC	2 cut(s)	223, 351
Lsp1109I	GCAGC	3 cut(s)	213, 252, 307
LweI	GCATC	2 cut(s)	148, 192
MaeI	CTAG	2 cut(s)	122, 344
MaeII	ACGT	1 cut(s)	392
MalI	GATC	2 cut(s)	327, 434
MboI	GATC	2 cut(s)	325, 432
MfeI	CAATTG	1 cut(s)	197
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	8 cut(s)	91, 183, 301, 304, 342, 354, 446, 517
Mph1103I	ATGCAT	1 cut(s)	141
MroNI	GCCGGC	1 cut(s)	108
MseI	TTAA	1 cut(s)	470
MspI	CCGG	4 cut(s)	13, 109, 501, 531
MspR9I	CCNGG	2 cut(s)	249, 532
MunI	CAATTG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	2 cut(s)	234, 513
MwoI	GCNNNNNNNGC	2 cut(s)	240, 461
NaeI	GCCGGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	2 cut(s)	325, 432
NgoMIV	GCCGGC	1 cut(s)	108
NlaIII	CATG	3 cut(s)	179, 326, 433
NlaIV	GGNNCC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	141
PagI	TCATGA	1 cut(s)	429
PaqCI	CACCTGC	1 cut(s)	408
PdiI	GCCGGC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	16, 426
PflMI	CCANNNNNTGG	2 cut(s)	214, 254
PkrI	GCNGC	8 cut(s)	6, 220, 228, 231, 242, 297, 444, 454
PmaCI	CACGTG	1 cut(s)	393
PmlI	CACGTG	1 cut(s)	393
Ppu21I	YACGTR	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	247
PspCI	CACGTG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	505
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	8 cut(s)	5, 219, 227, 230, 241, 296, 443, 453
Sau3AI	GATC	2 cut(s)	325, 432
ScrFI	CCNGG	2 cut(s)	249, 532
SetI	ASST	9 cut(s)	86, 127, 228, 272, 356, 395, 422, 478, 509
SfaNI	GCATC	2 cut(s)	148, 192
SmlI	CTYRAG	2 cut(s)	162, 265
SmoI	CTYRAG	2 cut(s)	162, 265
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	6 cut(s)	5, 218, 221, 229, 443, 452
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	2 cut(s)	122, 344
StyD4I	CCNGG	2 cut(s)	247, 530
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	197
TauI	GCSGC	5 cut(s)	7, 221, 232, 445, 455
TfiI	GAWTC	2 cut(s)	16, 426
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TseI	GCWGC	3 cut(s)	226, 240, 295
TspDTI	ATGAA	2 cut(s)	380, 418
Van91I	CCANNNNNTGG	2 cut(s)	214, 254
XspI	CTAG	2 cut(s)	122, 344
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.