Prupe.2G285600_v2.0.a1

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015576
Physical Location & Seq
Forward (+)
28229087 .. 28231534
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G285600.1

Sequence Viewer

Length: 1335 bp
ATGACAAGGCAGCGAGCTGAGCTTGTTTCGTCCAAGATGGTGCTGAGGAAGGAGTGGGAGTTTGACACACCGGAGCAATGCCGACAGCGCCGTCGCAGGAGAATCGATATCAGGCGGGCACGGTGGTCCTACTCCGGCCACTACTACCTCCCTGTACGCCATGATCAGAACAATTCAGACGACCATGAGCAGACTTGTCTGTTATCTGATTATGTACAACGGAGGCAAAATAATAATATCAATCTGAATTTTGAGGAGGAGGAGGATGGGACGGAGGCAGTGGAGCCAACTGATGATCACCATGCGGTGGTGCTGCGGCCAGCTGTACTGGTTCCGCGCTATTGGCTTCATCATAATCCGATGCCGGAGTTTGGAACCATTTGGCTGACTAGGCGTCCAGATCAGATTCAGATCAGTACGGATGACTACGATACGGTGTTCGTCAAGGAGGACTTTTGTCGGCTCGATTTCGATGATGTTCCCGGCAGTGGTCGGCCTATGCATTTCTTCGCTGTCTACGATGGTCATGGACACCCTCATGTCTCCGCGCTTTGCAAACAACAGATGCACGAATTCGTAGCAGAGGAGCTAAGGCGAGTGTTCTACGCGTCAGGGGGTGCCAATGGTGATAAAAACTTGGGCTTGGGTTCTTCGCAGGAGGAAGAGGCGAAGTGGCCTGTTCTGGTACGGACGGCCCTAGAGAGGAGCTTCGAGAGGATGCACCGGCTGGCCCAGGACGCCTGCTCTTGTGGGAATATCGGGCACACATGCGGGTGCAAGCCCAATATCAATGCGCTGCCAGTTGCGGGGTCCACTGCTGTCGTGGCCATTTTGACAGCTCAGCATATTGTGATTGCTAAGTCTGGTTCCACACACGCCGTTCTTGCCCGCGCCGGGAGTCCTTTCCCACTCTCCCATGATCACAAGCGTGAAAGGTTGTTCTATCACAATGGCGTGCGTGTATATGGAATTCTCAACATGTTTCATTATCTGAGTCCAAGTGATGAACGCCACATTTTGAAACCAGTGGTGACATTGGAACCTGAGATTTCCATCATAAAAAGAGAAGTAGAGCGAGATGAGTGCTTGATTTTGGCGAACGACGGTATTTGGAATGTGATGTCGGATGACATGGCTTGCAGAGTGGCTTGCAGGTGTCTTAGAGATGACAGCCATATTAGTCCTATTGTTGCTGTAGTTGATTCTCATATAAACGGCCCTGTGCTTCTATCTTCTAAAAGCCACCTAGCAGCTTCGCTGCTCTGCCGCCTCGCATTTGCTCGTGGAAGCCTTGACGATATGAGTGTCATGGTTGTCGATTTGAAAAGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

445

Amino Acids

50.46

Weight (kDa)

6.31

Isoelectric Point (pI)

73.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24380
malus_domestica MD01G1191100.v1.1
prunus_persica Prupe.2G285600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043861 RchiOBHm_Chr5g0043871
rosa_laevigata RLG00000034220
rosa_multiflora Rmu_co8273823.1_g000001 Rmu_sc0009227.1_g000016 Rmu_sc0010851.1_g000002
rosa_roxburghii Rroxscaffold_1G00037190
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292900 Rh5BG301000 Rh5CG328600 Rh5DG309900
rosa_wichuraiana Rw5G027160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1143
AasI GACNNNNNNGTC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 1143
AccB1I GGYRCC 1 cut(s) 617
AccB7I CCANNNNNTGG 1 cut(s) 307
AccI GTMKAC 1 cut(s) 516
AccII CGCG 4 cut(s) 337, 548, 608, 891
AciI CCGC 9 cut(s) 115, 305, 316, 335, 546, 771, 806, 889, 1267
AcoI YGGCCR 3 cut(s) 136, 317, 825
AcsI RAATTY 3 cut(s) 247, 572, 969
AcyI GRCGYC 2 cut(s) 394, 738
AfaI GTAC 5 cut(s) 156, 216, 327, 418, 687
AfiI CCNNNNNNNGG 6 cut(s) 307, 371, 488, 702, 806, 894
AflIII ACRYGT 2 cut(s) 606, 978
AgsI TTSAA 2 cut(s) 1021, 1324
AhdI GACNNNNNGTC 1 cut(s) 393
AjnI CCWGG 1 cut(s) 732
AleI CACNNNNGTG 1 cut(s) 927
AluBI AGCT 7 cut(s) 17, 22, 323, 589, 708, 839, 1253
AluI AGCT 7 cut(s) 17, 22, 323, 589, 708, 839, 1253
Alw26I GTCTC 1 cut(s) 547
AoxI GGCC 8 cut(s) 136, 317, 494, 674, 693, 729, 825, 1216
ApeKI GCWGC 5 cut(s) 10, 313, 796, 1250, 1258
ApoI RAATTY 3 cut(s) 247, 572, 969
AspLEI GCGC 5 cut(s) 90, 339, 550, 796, 893
AspS9I GGNCC 5 cut(s) 126, 694, 730, 810, 1217
AsuC2I CCSGG 2 cut(s) 483, 895
AsuHPI GGTGA 3 cut(s) 290, 638, 1042
AvaII GGWCC 2 cut(s) 126, 810
BaeGI GKGCMC 2 cut(s) 121, 765
BalI TGGCCA 1 cut(s) 827
BanI GGYRCC 1 cut(s) 617
BauI CACGAG 1 cut(s) 1281
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 5 cut(s) 22, 300, 783, 1245, 1262
BccI CCATC 4 cut(s) 31, 260, 515, 1061
BceAI ACGGC 4 cut(s) 75, 708, 863, 1231
BcgI CGANNNNNNTGC 4 cut(s) 85, 119, 1065, 1099
BciT130I CCWGG 1 cut(s) 734
BclI TGATCA 3 cut(s) 163, 295, 919
BcnI CCSGG 2 cut(s) 483, 895
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 3 cut(s) 390, 698, 1247
BfmI CTRYAG 1 cut(s) 1194
BfoI RGCGCY 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 1143
BisI GCNGC 7 cut(s) 11, 314, 317, 797, 1251, 1259, 1267
BlpI GCTNAGC 2 cut(s) 18, 840
BlsI GCNGC 7 cut(s) 12, 315, 318, 798, 1252, 1260, 1268
Bme1390I CCNGG 3 cut(s) 483, 734, 895
Bme18I GGWCC 2 cut(s) 126, 810
BmeRI GACNNNNNGTC 1 cut(s) 393
BmgT120I GGNCC 5 cut(s) 126, 694, 730, 810, 1217
BmiI GGNNCC 7 cut(s) 285, 333, 376, 619, 811, 868, 1041
BmrFI CCNGG 3 cut(s) 483, 734, 895
BmsI GCATC 3 cut(s) 351, 555, 708
BoxI GACNNNNGTC 1 cut(s) 456
Bpu10I CCTNAGC 2 cut(s) 44, 590
Bpu1102I GCTNAGC 2 cut(s) 18, 840
BpuMI CCSGG 2 cut(s) 483, 895
Bsa29I ATCGAT 1 cut(s) 105
BsaBI GATNNNNATC 2 cut(s) 410, 1052
BsaHI GRCGYC 2 cut(s) 394, 738
BsaJI CCNNGG 1 cut(s) 732
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 6 cut(s) 307, 371, 488, 702, 806, 894
Bse118I RCCGGY 1 cut(s) 723
Bse1I ACTGG 3 cut(s) 333, 800, 1025
Bse3DI GCAATG 1 cut(s) 83
Bse8I GATNNNNATC 2 cut(s) 410, 1052
BseBI CCWGG 1 cut(s) 734
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 4 cut(s) 271, 427, 723, 1132
BseJI GATNNNNATC 2 cut(s) 410, 1052
BseLI CCNNNNNNNGG 6 cut(s) 307, 371, 488, 702, 806, 894
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 5 cut(s) 9, 35, 854, 983, 1035
BseNI ACTGG 3 cut(s) 333, 800, 1025
BseRI GAGGAG 5 cut(s) 269, 272, 275, 599, 718
BseSI GKGCMC 2 cut(s) 121, 765
BseXI GCAGC 5 cut(s) 22, 300, 783, 1245, 1262
Bsh1236I CGCG 4 cut(s) 337, 548, 608, 891
BshFI GGCC 8 cut(s) 138, 319, 496, 676, 695, 731, 827, 1218
BshNI GGYRCC 1 cut(s) 617
BshVI ATCGAT 1 cut(s) 105
BsiSI CCGG 6 cut(s) 71, 135, 365, 483, 724, 894
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 6 cut(s) 307, 371, 488, 702, 806, 894
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 8 cut(s) 138, 319, 496, 676, 695, 731, 827, 1218
Bsp1286I GDGCHC 2 cut(s) 121, 765
Bsp1407I TGTACA 1 cut(s) 214
Bsp143I GATC 5 cut(s) 163, 295, 400, 411, 919
Bsp1720I GCTNAGC 2 cut(s) 18, 840
BspACI CCGC 9 cut(s) 115, 305, 316, 335, 546, 771, 806, 889, 1267
BspANI GGCC 8 cut(s) 138, 319, 496, 676, 695, 731, 827, 1218
BspCNI CTCAG 5 cut(s) 10, 36, 853, 984, 1036
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 4 cut(s) 337, 548, 608, 891
BspLI GGNNCC 7 cut(s) 285, 333, 376, 619, 811, 868, 1041
BspMI ACCTGC 1 cut(s) 1143
BspT107I GGYRCC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 214
BsrI ACTGG 3 cut(s) 333, 800, 1025
BssAI RCCGGY 1 cut(s) 723
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 5 cut(s) 163, 295, 400, 411, 919
BssNI GRCGYC 2 cut(s) 394, 738
BssSI CACGAG 1 cut(s) 1281
Bst2BI CACGAG 1 cut(s) 1281
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 3 cut(s) 123, 436, 1106
Bst6I CTCTTC 1 cut(s) 657
BstACI GRCGYC 2 cut(s) 394, 738
BstAUI TGTACA 1 cut(s) 214
BstDEI CTNAG 8 cut(s) 18, 44, 590, 840, 858, 992, 1044, 1160
BstF5I GGATG 4 cut(s) 271, 427, 723, 1132
BstFNI CGCG 4 cut(s) 337, 548, 608, 891
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 5 cut(s) 90, 339, 550, 796, 893
BstKTI GATC 5 cut(s) 166, 298, 403, 414, 922
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 5 cut(s) 163, 295, 400, 411, 919
BstMWI GCNNNNNNNGC 7 cut(s) 19, 87, 343, 391, 737, 824, 884
BstNI CCWGG 1 cut(s) 734
BstNSI RCATGY 2 cut(s) 771, 982
BstPAI GACNNNNGTC 1 cut(s) 456
BstSCI CCNGG 3 cut(s) 481, 732, 893
BstSFI CTRYAG 1 cut(s) 1194
BstSLI GKGCMC 2 cut(s) 121, 765
BstUI CGCG 4 cut(s) 337, 548, 608, 891
BstV1I GCAGC 5 cut(s) 22, 300, 783, 1245, 1262
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 8 cut(s) 138, 319, 496, 676, 695, 731, 827, 1218
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 4 cut(s) 271, 427, 723, 1132
BtsI GCAGTG 3 cut(s) 285, 493, 813
BtsIMutI CAGTG 4 cut(s) 285, 493, 813, 1032
BveI ACCTGC 1 cut(s) 1143
CfoI GCGC 5 cut(s) 90, 339, 550, 796, 893
Cfr10I RCCGGY 1 cut(s) 723
Cfr13I GGNCC 5 cut(s) 126, 694, 730, 810, 1217
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 3 cut(s) 383, 597, 746
Csp6I GTAC 5 cut(s) 155, 215, 326, 417, 686
CviQI GTAC 5 cut(s) 155, 215, 326, 417, 686
DdeI CTNAG 8 cut(s) 18, 44, 590, 840, 858, 992, 1044, 1160
DpnI GATC 5 cut(s) 165, 297, 402, 413, 921
DpnII GATC 5 cut(s) 163, 295, 400, 411, 919
DrdI GACNNNNNNGTC 1 cut(s) 90
DriI GACNNNNNGTC 1 cut(s) 393
DseDI GACNNNNNNGTC 1 cut(s) 90
EaeI YGGCCR 3 cut(s) 136, 317, 825
Eam1104I CTCTTC 1 cut(s) 657
Eam1105I GACNNNNNGTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 657
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 126, 810
EcoRI GAATTC 2 cut(s) 572, 969
EcoRII CCWGG 1 cut(s) 732
EcoRV GATATC 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 504
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 283
FauI CCCGC 4 cut(s) 108, 764, 799, 896
FbaI TGATCA 3 cut(s) 163, 295, 919
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 7 cut(s) 11, 314, 317, 797, 1251, 1259, 1267
FokI GGATG 4 cut(s) 278, 434, 730, 1139
Fsp4HI GCNGC 7 cut(s) 11, 314, 317, 797, 1251, 1259, 1267
FspBI CTAG 3 cut(s) 390, 698, 1247
GlaI GCGC 5 cut(s) 89, 338, 549, 795, 892
GluI GCNGC 7 cut(s) 11, 314, 317, 797, 1251, 1259, 1267
HaeII RGCGCY 1 cut(s) 91
HaeIII GGCC 8 cut(s) 138, 319, 496, 676, 695, 731, 827, 1218
HapII CCGG 6 cut(s) 71, 135, 365, 483, 724, 894
HgaI GACGC 3 cut(s) 383, 597, 746
HhaI GCGC 5 cut(s) 90, 339, 550, 796, 893
Hin1I GRCGYC 2 cut(s) 394, 738
Hin6I GCGC 5 cut(s) 88, 337, 548, 794, 891
HinP1I GCGC 5 cut(s) 88, 337, 548, 794, 891
HinfI GANTC 5 cut(s) 102, 406, 898, 994, 1202
HpaII CCGG 6 cut(s) 71, 135, 365, 483, 724, 894
HphI GGTGA 3 cut(s) 290, 638, 1042
Hpy166II GTNNAC 2 cut(s) 517, 813
Hpy188I TCNGA 9 cut(s) 168, 178, 208, 246, 360, 405, 411, 993, 1126
Hpy188III TCNNGA 2 cut(s) 398, 712
Hpy8I GTNNAC 2 cut(s) 517, 813
Hpy99I CGWCG 2 cut(s) 96, 1106
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 3 cut(s) 123, 436, 1106
HpyCH4V TGCA 7 cut(s) 502, 555, 568, 721, 777, 1140, 1152
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 87, 343, 391, 737, 824, 884
HpyF3I CTNAG 8 cut(s) 18, 44, 590, 840, 858, 992, 1044, 1160
Hsp92I GRCGYC 2 cut(s) 394, 738
HspAI GCGC 5 cut(s) 88, 337, 548, 794, 891
Ksp22I TGATCA 3 cut(s) 163, 295, 919
Kzo9I GATC 5 cut(s) 163, 295, 400, 411, 919
LmnI GCTCC 4 cut(s) 73, 283, 586, 705
Lsp1109I GCAGC 5 cut(s) 22, 300, 783, 1245, 1262
LweI GCATC 3 cut(s) 351, 555, 708
MaeI CTAG 3 cut(s) 390, 698, 1247
MaeIII GTNAC 1 cut(s) 1030
MalI GATC 5 cut(s) 165, 297, 402, 413, 921
MboI GATC 5 cut(s) 163, 295, 400, 411, 919
MboII GAAGA 4 cut(s) 499, 642, 674, 1224
MhlI GDGCHC 2 cut(s) 121, 765
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 4 cut(s) 172, 247, 572, 969
MluI ACGCGT 1 cut(s) 606
MluNI TGGCCA 1 cut(s) 827
MlyI GAGTC 2 cut(s) 907, 1003
MmeI TCCRAC 1 cut(s) 1104
Mox20I TGGCCA 1 cut(s) 827
Mph1103I ATGCAT 1 cut(s) 504
MscI TGGCCA 1 cut(s) 827
MslI CAYNNNNRTG 3 cut(s) 537, 772, 927
Msp20I TGGCCA 1 cut(s) 827
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 6 cut(s) 71, 135, 365, 483, 724, 894
MspR9I CCNGG 3 cut(s) 483, 734, 895
MvaI CCWGG 1 cut(s) 734
MvnI CGCG 4 cut(s) 337, 548, 608, 891
MwoI GCNNNNNNNGC 7 cut(s) 19, 87, 343, 391, 737, 824, 884
NciI CCSGG 2 cut(s) 483, 895
NdeII GATC 5 cut(s) 163, 295, 400, 411, 919
NlaIV GGNNCC 7 cut(s) 285, 333, 376, 619, 811, 868, 1041
NmuCI GTSAC 1 cut(s) 1030
NsiI ATGCAT 1 cut(s) 504
NspI RCATGY 2 cut(s) 771, 982
OliI CACNNNNGTG 1 cut(s) 927
PaqCI CACCTGC 1 cut(s) 1143
PciI ACATGT 1 cut(s) 978
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PfeI GAWTC 3 cut(s) 102, 406, 1202
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 7 cut(s) 12, 315, 318, 798, 1252, 1260, 1268
PleI GAGTC 2 cut(s) 906, 1002
PpsI GAGTC 2 cut(s) 906, 1002
PscI ACATGT 1 cut(s) 978
PshAI GACNNNNGTC 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 732
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 7 cut(s) 285, 333, 376, 619, 811, 868, 1041
PspPI GGNCC 5 cut(s) 126, 694, 730, 810, 1217
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 5 cut(s) 156, 216, 327, 418, 687
RsaNI GTAC 5 cut(s) 155, 215, 326, 417, 686
RseI CAYNNNNRTG 3 cut(s) 537, 772, 927
SatI GCNGC 7 cut(s) 11, 314, 317, 797, 1251, 1259, 1267
Sau3AI GATC 5 cut(s) 163, 295, 400, 411, 919
Sau96I GGNCC 5 cut(s) 126, 694, 730, 810, 1217
SchI GAGTC 2 cut(s) 907, 1003
ScrFI CCNGG 3 cut(s) 483, 734, 895
SduI GDGCHC 2 cut(s) 121, 765
SfaNI GCATC 3 cut(s) 351, 555, 708
SfcI CTRYAG 1 cut(s) 1194
SinI GGWCC 2 cut(s) 126, 810
SmiMI CAYNNNNRTG 3 cut(s) 537, 772, 927
Sse9I AATT 4 cut(s) 172, 247, 572, 969
SsiI CCGC 9 cut(s) 115, 305, 316, 335, 546, 771, 806, 889, 1267
SspMI CTAG 3 cut(s) 390, 698, 1247
StyD4I CCNGG 3 cut(s) 481, 732, 893
TaaI ACNGT 3 cut(s) 123, 436, 1106
TaqI TCGA 5 cut(s) 105, 465, 471, 711, 1317
TasI AATT 4 cut(s) 172, 247, 572, 969
TatI WGTACW 2 cut(s) 214, 325
TauI GCSGC 2 cut(s) 319, 1269
TfiI GAWTC 3 cut(s) 102, 406, 1202
TscAI CASTG 4 cut(s) 285, 493, 820, 1032
TseFI GTSAC 1 cut(s) 1030
TseI GCWGC 5 cut(s) 10, 313, 796, 1250, 1258
Tsp45I GTSAC 1 cut(s) 1030
TspDTI ATGAA 3 cut(s) 338, 974, 1020
TspGWI ACGGA 4 cut(s) 235, 287, 434, 703
TspRI CASTG 4 cut(s) 285, 493, 820, 1032
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 2 cut(s) 126, 810
XapI RAATTY 3 cut(s) 247, 572, 969
XceI RCATGY 2 cut(s) 771, 982
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 3 cut(s) 390, 698, 1247
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.