FvH4_3g24440

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005046
Physical Location & Seq
Reverse (-)
17500024 .. 17503838
3815 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24440.t1

Sequence Viewer

Length: 3108 bp
ATGAACCCTTTTGAGCAGAACAACAATGACGCAGACGACGACTCCAGGCTACCCCGCAAGCGGAGGAATAGATGGGAACAGTCGCCGGACCACGGTGATGATCGTCCCAAGAAAATACCCAAAACGACGTCGGATTGGGACTTGCCAGATTCCACGCCGAAACCGATGAGAAGGAACCGCTGGGACGAGACACCAATAGACGCTCCGATCTTCGATTCCGACGCCACTCCGTCTCTTTCAATCACCGCCACGCCGACTCCGAAAAGCTCAAGGTGGGACCAGACGCCCCAGGCCGCCGCGGCGGATTTCACACCTGGAAAGACTCCCTTCGGCGGAGCCGGGATCGCTACGCCGACGCCGGGAGGTATCAAGGTCATCACGCCGGAGGAGGATTTGAGTGATGAGCAGTTGGATGCTATGATTCCGGCGGGGTATAAGATAATGGAACCTCCAGCGGGGTACAAGCCGATTAGGACTCCGGCAAGGAAGCTTCTCGAGACGCCAAAGACTCCGTTTTACACGATTCCGGTGGAGAATCGGGGACAGATGTTTGATTTGCCTAAGGAGACGCCGGACGGCGTGGCCCTGCAGCCGGAGGATTACCAATTTTTCGGGCCGTTGATGATTGAGGTAGATGATGAGGAGTTGTCGGCGGAGGAGGCGAGAGATAGGAGGATTATGAAGCTTCTGCTGAAGGTGAAAAACGGCACGCCGCAGCAGAGGAAGGCAGCATTGAGGCAGATTACTCTGAAGGCTGTTGAGTTTGGTGCCGGGCCGTTGTTTGACCGCATCCTGCCTCTGCTGATGCAACAGGCTGCAGGAAAGGACCAGGAGAGGCATCTTCTTGTGAAGGTAATTGAGAGAGTGCTTTATAAGTTGGATTATTTGGTGTGTCCTTATGTGGAGAAGATTCTTATTGTTGTGTTGCCTTCATTGATTGATGAAGACTATTATGCGCGTGTCGAAGGGAGAGAGATTGTCTCCAAGCTTACTAAAGCAGCTGGTTTGGCTAGTATGATTGCAGCCTTGCGTAAGGGTATTGATGATGCTGATGAATATGTCAGGAACACAACTGCTAGGGCTTTCAGCGTTGTTGCTCATGCTGTTGGTGTTCCTGCTCTCTTGCCTTTTGTGAAAGCTGTGTGCATGAGCAAGAAATCGTGGCAGGCACGTCACACGGGGATCAAGATTGTTCAGCAGATTGGCATCTTGATTGGGCCGGCTGTTCTTCCCTACTTGAAGTCTCTGGTGGAGATTATAGAACATGGTCTCAGTGATGAAAACCACAGGGTCCGGACAATTACTGCGTTATCTGTTGCTGCTCTCGCTGAGGCTGCTGCCCCATATGGTATTGAAAGCTTTGAATCTGTATTGAAGCCATTGTGGCAGGGTACTAGGAGACACCATGGTAAGGTTTTGGCTGCGTTCTTGAAGGCAATTGGTTTTATTATCCCTCTTATGGATGAAACGTATGCGAGTTACTACACAAAGGAAGTGATGGTTGTTTTGATTCGAGAGTTCAAGACTCCTGATGAAGAAATGAAGAAAATTGTGCTTAAAGTGGTGAAACAATGTGTAAATACAGACGGTGTGGAGCGTGAATATATAAGAGATCATATTCTTCCTGAGTTTTTCAGAAACTTTTGGATTAGAAGGATGGCTTTGGATAGAAGAAACTACAAGCAACTAGTTGAAACAACTGTGGAGCTAGCAAACAAAGTGGGTGCTTCTGATATAATAGGGAGAATAGTTGAGGATCTCAAAGATGACAGTGAACCATATAGGCACATGGTTGTAGAGACAATTGAGAAGGTGGTTGTAAATTTAGGTGCTTCTGATATTCATGATAGGTTGGAGGAGCTTCTGATTGATGGTATTCTTTATGCCTTCCAAGAGCAGACCAGTGACGATGCAAATGTGATGCTTAGTGGGTTTGGTGCAGTTGTGAATTCTCTTGGCCCGAGGGTGAAATCGTACCTTCCCCAGATTTGTGGTATCATCAAGTGGCGCTTGAATAACAAGAGTGCAAAGGTCAGACAGCAAGCTGCAGATCTTATCTCAAGGATTTCTGTGGTCATGAAGACATGCGAAGCAGAACAACTGATGGCTCATCTTGGTCTAGTCTTGTATGAGTATTTGGGAGAAGAGTACCCAGAAGTTCTAGGATCAATTCTGGGAGCATTAAAGGCAATTGTCAATGTTATTGGTATGACAAAGATGACTCCTCCTATAAAGGATCTGATTCCCAGGTTGGCTCCAATTCTGAAGAATAGGCATGAGAAAGTTCAGGAGAACTGTATTGACCTTGTTGGTCGCATTGCTGACCGTGGCGCTGAGTTTGTTCCAGCAAGAGAGTGGATGAGGATCTGTTTCGAGCTTCTTGAGATGCTGAAAGCTCATAAGAAGGGTATCCGGCGAGCTACTGTGAATACTTTTGGGTACATTGCAAAAGCCATTGGTCCACAAGATGTCCTGGGAACTCTCCTGAATAATCTCAAGGTGCAGGAGCGTCAGAATCGTGTTTGCACGACTGTAGCAATTGCAATAGTAGCTGAAACGTGTGCTCCTTTTACAGTTCTGCCAGCTCTGATGAATGAGTACCGTGTCCAAGAGCTTAACGTCAGGAATGGTGTTTTGAAATCCCTGTCTTTCATTTTTGAGTACATTGGTGAAATGGGGAAAGAATATATATATGCGGTGACCCCATTGCTTGAGGATGCCCTCATGGACAGAGATCTGGTTCACAGGCAAACTGCAGCTTCTGTTGTCAAGCACATGGCTCTGGGGGTAGCTGGATTGGGTTGCGAGGAGGCGTTAGTCCACTTGCTGAACTATGTCTGGCCAAACATATTTGAGACTTCCCCACATGTTATAAATGCTGTTATGGAAGCCATTGAAGGGATGAGGGTGGGTTTGGGTCCTGCTGTTGTTCTCAATTACTGTCTCCAGGGGCTGTTCCATCCTGCTAGGAAGGTTAGGGAGGCGTACTGGAAGATTTACAACTCACTGTATATTGGAGCTCAAGATGCTCTTGTGGCAGCATACCCTTTGCTGGAGAATGAGGAGCATCATGTGTATACAAGGCCAGAGCTGACGATGTTCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SF3b1

Protein Analysis

1036

Amino Acids

116.16

Weight (kDa)

6.37

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SF3b1 PF08920 57 - 179 4e-17 Splicing factor 3B subunit 1
TPR_DNAAF5 PF25757 343 - 486 1.2e-06 Dynein axonemal assembly factor 5-like, TPR repeats
TOR1L1_N PF24714 622 - 817 4.4e-07 TORTIFOLIA1 N-terminal
PPP2R1A-like_HEAT PF22646 817 - 889 2.7e-19 PPP2R1A-like HEAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 873, 2873
AatII GACGTC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 767
AccI GTMKAC 1 cut(s) 3077
AccII CGCG 2 cut(s) 299, 958
AccIII TCCGGA 1 cut(s) 1293
AclWI GGATC 6 cut(s) 350, 1190, 1764, 2173, 2244, 2372
AcoI YGGCCR 1 cut(s) 2840
AcsI RAATTY 2 cut(s) 1822, 1948
AcuI CTGAAG 3 cut(s) 713, 770, 2285
AcyI GRCGYC 6 cut(s) 128, 222, 284, 356, 500, 569
AfaI GTAC 8 cut(s) 461, 1393, 1976, 2150, 2441, 2600, 2663, 2987
AflIII ACRYGT 2 cut(s) 2558, 2866
AhlI ACTAGT 1 cut(s) 1687
AjiI CACGTC 1 cut(s) 1172
AjnI CCWGG 7 cut(s) 44, 288, 313, 828, 2246, 2472, 2946
Alw21I GWGCWC 2 cut(s) 2566, 3022
AlwI GGATC 6 cut(s) 350, 1190, 1764, 2173, 2244, 2372
AlwNI CAGNNNCTG 2 cut(s) 2762, 2953
Ama87I CYCGRG 2 cut(s) 494, 1960
Aor13HI TCCGGA 1 cut(s) 1293
AoxI GGCC 8 cut(s) 291, 582, 614, 773, 1217, 1957, 2840, 3083
ApoI RAATTY 2 cut(s) 1822, 1948
AspLEI GCGC 3 cut(s) 958, 2010, 2333
AsuC2I CCSGG 3 cut(s) 340, 360, 772
AsuHPI GGTGA 7 cut(s) 107, 235, 709, 1576, 1978, 2681, 2710
AsuNHI GCTAGC 1 cut(s) 1708
AvaI CYCGRG 2 cut(s) 494, 1960
AvaII GGWCC 6 cut(s) 88, 277, 826, 1291, 2459, 2918
AxyI CCTNAGG 1 cut(s) 561
BalI TGGCCA 1 cut(s) 2842
BanI GGYRCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 3022
BbsI GAAGAC 2 cut(s) 951, 2087
Bbv12I GWGCWC 2 cut(s) 2566, 3022
BbvCI CCTCAGC 1 cut(s) 1329
BccI CCATC 6 cut(s) 66, 1492, 1651, 1865, 2098, 2967
BceAI ACGGC 4 cut(s) 592, 601, 721, 760
BciT130I CCWGG 7 cut(s) 46, 290, 315, 830, 2248, 2474, 2948
BciVI GTATCC 1 cut(s) 2420
BcnI CCSGG 3 cut(s) 340, 360, 772
BcuI ACTAGT 1 cut(s) 1687
BfaI CTAG 8 cut(s) 1011, 1077, 1395, 1688, 1709, 2120, 2162, 2967
BfmI CTRYAG 5 cut(s) 587, 816, 2046, 2532, 2754
BfoI RGCGCY 2 cut(s) 2011, 2334
BfuI GTATCC 1 cut(s) 2420
BglI GCCNNNNNGGC 2 cut(s) 299, 1384
BglII AGATCT 2 cut(s) 2050, 2734
Bme18I GGWCC 6 cut(s) 88, 277, 826, 1291, 2459, 2918
BmeT110I CYCGRG 2 cut(s) 494, 1960
BmgBI CACGTC 1 cut(s) 1172
BmiI GGNNCC 8 cut(s) 176, 278, 337, 447, 769, 1292, 2256, 2919
BmtI GCTAGC 1 cut(s) 1712
BpiI GAAGAC 2 cut(s) 951, 2087
BplI GAGNNNNNCTC 2 cut(s) 965, 997
BpmI CTGGAG 4 cut(s) 28, 435, 2930, 3074
Bpu10I CCTNAGC 1 cut(s) 1329
BpuEI CTTGAG 6 cut(s) 253, 2044, 2402, 2480, 2732, 3006
BpuMI CCSGG 3 cut(s) 340, 360, 772
BsaBI GATNNNNATC 2 cut(s) 1205, 2363
BsaHI GRCGYC 6 cut(s) 128, 222, 284, 356, 500, 569
BsaI GGTCTC 1 cut(s) 1274
BsaJI CCNNGG 9 cut(s) 91, 288, 297, 1405, 1961, 2246, 2326, 2473, 2947
BsaWI WCCGGW 2 cut(s) 526, 1293
BsaXI ACNNNNNCTCC 6 cut(s) 26, 56, 241, 271, 2548, 2578
Bse118I RCCGGY 1 cut(s) 1219
Bse1I ACTGG 2 cut(s) 1902, 2993
Bse21I CCTNAGG 1 cut(s) 561
Bse3DI GCAATG 3 cut(s) 2316, 2442, 2705
Bse8I GATNNNNATC 2 cut(s) 1205, 2363
BseAI TCCGGA 1 cut(s) 1293
BseBI CCWGG 7 cut(s) 46, 290, 315, 830, 2248, 2474, 2948
BseDI CCNNGG 9 cut(s) 91, 288, 297, 1405, 1961, 2246, 2326, 2473, 2947
BseGI GGATG 8 cut(s) 418, 789, 1468, 1662, 2364, 2722, 2907, 2959
BseJI GATNNNNATC 2 cut(s) 1205, 2363
BseMI GCAATG 3 cut(s) 2316, 2442, 2705
BseMII CTCAG 4 cut(s) 1285, 1320, 1617, 2325
BseNI ACTGG 2 cut(s) 1902, 2993
BseRI GAGGAG 7 cut(s) 401, 656, 671, 1871, 2214, 2822, 3077
BseYI CCCAGC 1 cut(s) 180
BsgI GTGCAG 2 cut(s) 1959, 2522
Bsh1236I CGCG 2 cut(s) 299, 958
BshFI GGCC 8 cut(s) 293, 584, 616, 775, 1219, 1959, 2842, 3085
BshNI GGYRCC 1 cut(s) 767
BsiHKAI GWGCWC 2 cut(s) 2566, 3022
BsiHKCI CYCGRG 2 cut(s) 494, 1960
BslFI GGGAC 5 cut(s) 90, 152, 197, 290, 555
BsmBI CGTCTC 3 cut(s) 237, 491, 560
BsmFI GGGAC 5 cut(s) 90, 152, 197, 290, 555
BsnI GGCC 8 cut(s) 293, 584, 616, 775, 1219, 1959, 2842, 3085
Bso31I GGTCTC 1 cut(s) 1274
BsoBI CYCGRG 2 cut(s) 494, 1960
Bsp1286I GDGCHC 2 cut(s) 2566, 3022
Bsp13I TCCGGA 1 cut(s) 1293
Bsp19I CCATGG 1 cut(s) 1405
BspANI GGCC 8 cut(s) 293, 584, 616, 775, 1219, 1959, 2842, 3085
BspCNI CTCAG 4 cut(s) 1284, 1321, 1618, 2326
BspEI TCCGGA 1 cut(s) 1293
BspFNI CGCG 2 cut(s) 299, 958
BspHI TCATGA 2 cut(s) 1843, 2076
BspLI GGNNCC 8 cut(s) 176, 278, 337, 447, 769, 1292, 2256, 2919
BspMAI CTGCAG 4 cut(s) 591, 820, 2050, 2758
BspOI GCTAGC 1 cut(s) 1712
BspPI GGATC 6 cut(s) 350, 1190, 1764, 2173, 2244, 2372
BspT107I GGYRCC 1 cut(s) 767
BspTNI GGTCTC 1 cut(s) 1274
BsrDI GCAATG 3 cut(s) 2316, 2442, 2705
BsrFI RCCGGY 1 cut(s) 1219
BsrI ACTGG 2 cut(s) 1902, 2993
BssAI RCCGGY 1 cut(s) 1219
BssECI CCNNGG 9 cut(s) 91, 288, 297, 1405, 1961, 2246, 2326, 2473, 2947
BssNAI GTATAC 1 cut(s) 3078
BssNI GRCGYC 6 cut(s) 128, 222, 284, 356, 500, 569
BssT1I CCWWGG 1 cut(s) 1405
Bst1107I GTATAC 1 cut(s) 3078
Bst2UI CCWGG 7 cut(s) 46, 290, 315, 830, 2248, 2474, 2948
Bst6I CTCTTC 1 cut(s) 2139
BstACI GRCGYC 6 cut(s) 128, 222, 284, 356, 500, 569
BstC8I GCNNGC 8 cut(s) 59, 710, 1167, 1221, 1710, 2043, 2418, 2583
BstDEI CTNAG 6 cut(s) 561, 1271, 1329, 1626, 1925, 2334
BstDSI CCRYGG 4 cut(s) 91, 297, 1405, 2326
BstEII GGTNACC 1 cut(s) 2698
BstF5I GGATG 8 cut(s) 418, 789, 1468, 1662, 2364, 2722, 2907, 2959
BstFNI CGCG 2 cut(s) 299, 958
BstH2I RGCGCY 2 cut(s) 2011, 2334
BstHHI GCGC 3 cut(s) 958, 2010, 2333
BstNI CCWGG 7 cut(s) 46, 290, 315, 830, 2248, 2474, 2948
BstNSI RCATGY 2 cut(s) 2088, 2870
BstPI GGTNACC 1 cut(s) 2698
BstSFI CTRYAG 5 cut(s) 587, 816, 2046, 2532, 2754
BstUI CGCG 2 cut(s) 299, 958
BstV2I GAAGAC 2 cut(s) 951, 2087
BstX2I RGATCY 5 cut(s) 1756, 2050, 2236, 2364, 2734
BstXI CCANNNNNNTGG 1 cut(s) 1991
BstYI RGATCY 5 cut(s) 1756, 2050, 2236, 2364, 2734
BstZ17I GTATAC 1 cut(s) 3078
Bsu36I CCTNAGG 1 cut(s) 561
BsuI GTATCC 1 cut(s) 2420
BsuRI GGCC 8 cut(s) 293, 584, 616, 775, 1219, 1959, 2842, 3085
BtgI CCRYGG 4 cut(s) 91, 297, 1405, 2326
BtrI CACGTC 1 cut(s) 1172
BtsCI GGATG 8 cut(s) 418, 789, 1468, 1662, 2364, 2722, 2907, 2959
BtsIMutI CAGTG 4 cut(s) 1279, 1777, 1909, 3005
Cac8I GCNNGC 8 cut(s) 59, 710, 1167, 1221, 1710, 2043, 2418, 2583
CaiI CAGNNNCTG 2 cut(s) 2762, 2953
CciI TCATGA 2 cut(s) 1843, 2076
CfoI GCGC 3 cut(s) 958, 2010, 2333
Cfr10I RCCGGY 1 cut(s) 1219
Cfr42I CCGCGG 1 cut(s) 300
CseI GACGC 8 cut(s) 38, 209, 230, 292, 364, 508, 577, 2498
Csp6I GTAC 8 cut(s) 460, 1392, 1975, 2149, 2440, 2599, 2662, 2986
CspCI CAANNNNNGTGG 2 cut(s) 1701, 1736
CviQI GTAC 8 cut(s) 460, 1392, 1975, 2149, 2440, 2599, 2662, 2986
DdeI CTNAG 6 cut(s) 561, 1271, 1329, 1626, 1925, 2334
EaeI YGGCCR 1 cut(s) 2840
Eam1104I CTCTTC 1 cut(s) 2139
EarI CTCTTC 1 cut(s) 2139
EciI GGCGGA 3 cut(s) 317, 348, 668
Ecl136II GAGCTC 1 cut(s) 3020
Eco130I CCWWGG 1 cut(s) 1405
Eco24I GRGCYC 1 cut(s) 3022
Eco31I GGTCTC 1 cut(s) 1274
Eco47I GGWCC 6 cut(s) 88, 277, 826, 1291, 2459, 2918
Eco53kI GAGCTC 1 cut(s) 3020
Eco57I CTGAAG 3 cut(s) 713, 770, 2285
Eco81I CCTNAGG 1 cut(s) 561
Eco88I CYCGRG 2 cut(s) 494, 1960
Eco91I GGTNACC 1 cut(s) 2698
EcoICRI GAGCTC 1 cut(s) 3020
EcoO109I RGGNCCY 1 cut(s) 2918
EcoO65I GGTNACC 1 cut(s) 2698
EcoRI GAATTC 1 cut(s) 1948
EcoRII CCWGG 7 cut(s) 44, 288, 313, 828, 2246, 2472, 2946
EcoT14I CCWWGG 1 cut(s) 1405
EcoT38I GRGCYC 1 cut(s) 3022
ErhI CCWWGG 1 cut(s) 1405
Esp3I CGTCTC 3 cut(s) 237, 491, 560
FalI AAGNNNNNCTT 8 cut(s) 311, 343, 1645, 1677, 1994, 2026, 3015, 3047
FaqI GGGAC 5 cut(s) 90, 152, 197, 290, 555
FauI CCCGC 3 cut(s) 62, 421, 448
FauNDI CATATG 1 cut(s) 1345
FblI GTMKAC 1 cut(s) 3077
FokI GGATG 8 cut(s) 425, 776, 1475, 1669, 2371, 2729, 2914, 2946
FriOI GRGCYC 1 cut(s) 3022
FspBI CTAG 8 cut(s) 1011, 1077, 1395, 1688, 1709, 2120, 2162, 2967
GlaI GCGC 3 cut(s) 957, 2009, 2332
GsaI CCCAGC 1 cut(s) 184
GsuI CTGGAG 4 cut(s) 28, 435, 2930, 3074
HaeII RGCGCY 2 cut(s) 2011, 2334
HaeIII GGCC 8 cut(s) 293, 584, 616, 775, 1219, 1959, 2842, 3085
HgaI GACGC 8 cut(s) 38, 209, 230, 292, 364, 508, 577, 2498
HhaI GCGC 3 cut(s) 958, 2010, 2333
Hin1I GRCGYC 6 cut(s) 128, 222, 284, 356, 500, 569
Hin6I GCGC 3 cut(s) 956, 2008, 2331
HinP1I GCGC 3 cut(s) 956, 2008, 2331
HindIII AAGCTT 4 cut(s) 488, 683, 986, 1357
HphI GGTGA 7 cut(s) 107, 235, 709, 1576, 1978, 2681, 2710
Hpy166II GTNNAC 5 cut(s) 1775, 2462, 2743, 2821, 3078
Hpy8I GTNNAC 5 cut(s) 1775, 2462, 2743, 2821, 3078
Hpy99I CGWCG 5 cut(s) 41, 130, 133, 224, 358
HpyCH4IV ACGT 5 cut(s) 128, 1171, 1469, 2558, 2619
HpyF3I CTNAG 6 cut(s) 561, 1271, 1329, 1626, 1925, 2334
HpySE526I ACGT 5 cut(s) 128, 1171, 1469, 2558, 2619
Hsp92I GRCGYC 6 cut(s) 128, 222, 284, 356, 500, 569
HspAI GCGC 3 cut(s) 956, 2008, 2331
Kpn2I TCCGGA 1 cut(s) 1293
KroI GCCGGC 1 cut(s) 1219
KroNI GCCGGC 1 cut(s) 1221
KspI CCGCGG 1 cut(s) 300
MaeI CTAG 8 cut(s) 1011, 1077, 1395, 1688, 1709, 2120, 2162, 2967
MaeII ACGT 5 cut(s) 128, 1171, 1469, 2558, 2619
MaeIII GTNAC 4 cut(s) 1172, 1478, 1904, 2698
MfeI CAATTG 4 cut(s) 1437, 1803, 2190, 2538
MflI RGATCY 5 cut(s) 1756, 2050, 2236, 2364, 2734
MhlI GDGCHC 2 cut(s) 2566, 3022
MlsI TGGCCA 1 cut(s) 2842
MluNI TGGCCA 1 cut(s) 2842
MlyI GAGTC 7 cut(s) 35, 250, 316, 469, 502, 1519, 2215
MmeI TCCRAC 5 cut(s) 111, 243, 390, 858, 1833
Mox20I TGGCCA 1 cut(s) 2842
MroI TCCGGA 1 cut(s) 1293
MroNI GCCGGC 1 cut(s) 1219
MscI TGGCCA 1 cut(s) 2842
MseI TTAA 3 cut(s) 1557, 2183, 2616
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 2842
MspA1I CMGCKG 4 cut(s) 180, 299, 455, 1001
MunI CAATTG 4 cut(s) 1437, 1803, 2190, 2538
MvaI CCWGG 7 cut(s) 46, 290, 315, 830, 2248, 2474, 2948
MvnI CGCG 2 cut(s) 299, 958
NaeI GCCGGC 1 cut(s) 1221
NciI CCSGG 3 cut(s) 340, 360, 772
NcoI CCATGG 1 cut(s) 1405
NdeI CATATG 1 cut(s) 1345
NgoMIV GCCGGC 1 cut(s) 1219
NheI GCTAGC 1 cut(s) 1708
NlaIV GGNNCC 8 cut(s) 176, 278, 337, 447, 769, 1292, 2256, 2919
NmuCI GTSAC 3 cut(s) 1172, 1904, 2698
NspI RCATGY 2 cut(s) 2088, 2870
PaeR7I CTCGAG 1 cut(s) 494
PagI TCATGA 2 cut(s) 1843, 2076
PciI ACATGT 1 cut(s) 2866
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 161, 257
PdiI GCCGGC 1 cut(s) 1221
PleI GAGTC 7 cut(s) 35, 250, 316, 469, 502, 1519, 2215
PpsI GAGTC 7 cut(s) 35, 250, 316, 469, 502, 1519, 2215
PpuMI RGGWCCY 1 cut(s) 2918
PscI ACATGT 1 cut(s) 2866
PsiI TTATAA 2 cut(s) 873, 2873
Psp124BI GAGCTC 1 cut(s) 3022
Psp5II RGGWCCY 1 cut(s) 2918
Psp6I CCWGG 7 cut(s) 44, 288, 313, 828, 2246, 2472, 2946
PspEI GGTNACC 1 cut(s) 2698
PspFI CCCAGC 1 cut(s) 180
PspGI CCWGG 7 cut(s) 44, 288, 313, 828, 2246, 2472, 2946
PspN4I GGNNCC 8 cut(s) 176, 278, 337, 447, 769, 1292, 2256, 2919
PspPPI RGGWCCY 1 cut(s) 2918
PstI CTGCAG 4 cut(s) 591, 820, 2050, 2758
PstNI CAGNNNCTG 2 cut(s) 2762, 2953
PsuI RGATCY 5 cut(s) 1756, 2050, 2236, 2364, 2734
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 8 cut(s) 461, 1393, 1976, 2150, 2441, 2600, 2663, 2987
RsaNI GTAC 8 cut(s) 460, 1392, 1975, 2149, 2440, 2599, 2662, 2986
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 3022
SacII CCGCGG 1 cut(s) 300
SaqAI TTAA 3 cut(s) 1557, 2183, 2616
SchI GAGTC 7 cut(s) 35, 250, 316, 469, 502, 1519, 2215
SduI GDGCHC 2 cut(s) 2566, 3022
SfcI CTRYAG 5 cut(s) 587, 816, 2046, 2532, 2754
Sfr274I CTCGAG 1 cut(s) 494
Sfr303I CCGCGG 1 cut(s) 300
SgrBI CCGCGG 1 cut(s) 300
SinI GGWCC 6 cut(s) 88, 277, 826, 1291, 2459, 2918
SlaI CTCGAG 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 7 cut(s) 268, 494, 2059, 2381, 2495, 2711, 3021
SmoI CTYRAG 7 cut(s) 268, 494, 2059, 2381, 2495, 2711, 3021
SpeI ACTAGT 1 cut(s) 1687
SspMI CTAG 8 cut(s) 1011, 1077, 1395, 1688, 1709, 2120, 2162, 2967
SstI GAGCTC 1 cut(s) 3022
StyI CCWWGG 1 cut(s) 1405
TaiI ACGT 5 cut(s) 131, 1174, 1472, 2561, 2622
TaqI TCGA 5 cut(s) 213, 495, 963, 1513, 2373
TatI WGTACW 1 cut(s) 2661
TauI GCSGC 4 cut(s) 296, 299, 302, 715
Tru1I TTAA 3 cut(s) 1557, 2183, 2616
Tru9I TTAA 3 cut(s) 1557, 2183, 2616
TscAI CASTG 4 cut(s) 1279, 1777, 1909, 3012
TseFI GTSAC 3 cut(s) 1172, 1904, 2698
Tsp45I GTSAC 3 cut(s) 1172, 1904, 2698
TspGWI ACGGA 2 cut(s) 219, 501
TspRI CASTG 4 cut(s) 1279, 1777, 1909, 3012
VpaK11BI GGWCC 6 cut(s) 88, 277, 826, 1291, 2459, 2918
XapI RAATTY 2 cut(s) 1822, 1948
XceI RCATGY 2 cut(s) 2088, 2870
XcmI CCANNNNNNNNNTGG 1 cut(s) 2352
XhoI CTCGAG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 3077
XspI CTAG 8 cut(s) 1011, 1077, 1395, 1688, 1709, 2120, 2162, 2967
ZraI GACGTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.