MD17G1162100.v1.1

Splicing factor 3B subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
16023678 .. 16027478
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1162100.v1.1.491

Sequence Viewer

Length: 3801 bp
ATGGCATCCGACGACGAGATAGAGAAGACGCAGGAAGAGAGGAAGAGGATGGAGAAGCAATTGGCCTCCCTCACCTCCGTCACCTTCGACACAGACCTCTACGGCGGCACCGACAAGGGCGCATACGTCTCGTCGATCCCTGTGAACGACGACGATGACAACGCGGAGGCCATGGACAACGAGATTGCTCGGAGGATGGCGGCGTCGTACACGGCGCCCAAGTCGGTGTTGAACGAGAGGCCGAGAGGCGGCGACGCCGATGAGGATTTGGGGTTCAAGAAGCCGCAGAGGATTATCGATCGGGAGGATGATTATCGACAGCGGAGGTTGAACCGGATCATATCGCCTGAGCGGCACGACCCGTTTGCGTCCGGGGAGAAGACTCCGGACCCGTCGGTGAGGACTTATGCCGATGTGATGAGGGAGGAAGCCCTGAAGAGGGAGAAGGATGAGACTCTGAAGCTTATTGCTAAGAAGATGAAGGAGAAAGAGGAGGCGCCGCCGGAAAAGGAGGATAAGCCTGCTGCTGCTGAGGCGGTGCCTCAAAAGAGGAGGAATCGGTGGGACCAGTCTCAGGATGGTGATGGTGGAGGCAAGAAGGCAAAAACGTCGGATTGGGACTTGCCGGATACGACGCCAGGAAAGTGGGACGCAACTCCGACGCCAGGGAGGGTTTCGGATTCGACTCCATCACTGGGGAGGAGGAACCGCTGGGATGAGACACCCACTCCGGGGCGGGTGGCAGATTCGGATGCTACTCCAGCTGGTGCTGTCACTCCCGGTGCCACCCCTGCTGGGATGGCTTGGGATGCGACTCCGAAGCTTCCTGGGATGGCCACACCGACACCGAAACGGCAGAGGTCAAGGTGGGATGAGACCCCTGCCTCAATGGGCAGTGCGACCCCAATGGCTGGGGCAACCCCTGCTGCTGCCTATACACCTGGTGTGACCCCTGTAGGTGGAGTTGAACTTGCTACCCCAACCCCCGGGGCTATTAATGTGAGGGGAGCCATTACGCCAGAGCAGTATAATCTATTGAGGTGGGAGAAGGATATTGAAGAGAGGAATAGACCATTGACTGATGAAGAGCTGGATGCTATGTTTCCTCAAGAAGGGTATAAAGTTTTGGACCCACCGTCTTCTTATGTGCCGATTAGGACTCCGGCGAGGAAACTTCTTGCTACCCCCACTCCAATGGGGACTCCTATGTATTCTATTCCGGAAGAGAATCGTGGGCAGCAGTTTGATGTGCCTAAGGAGTTGCCTGGTGGGTTACCGTTTATGAAGCCTGAGGACTATCAATACTTTGGGGCATTGCTGAATGAAGATGAGGAGGAGGAATTGTCCCCTGATGAGCAGAAAGAGCGGAAGATTATGAAGCTTCTGCTTAAAGTTAAGAATGGAACACCACAGCAGAGAAAGACAGCATTGAGGCAGCTTACTGATAAGGCTCGTGAGTTTGGTGCTGGCCCCTTGTTTAACCGCATTTTGCCTCTGCTTATGCAACCCACTTTGGAAGACCAAGAGAGGCATCTTTTGGTTAAGGTTATTGATCGAGTGCTTTATAAATTGGATGAGTTGGTACGTCCTTATGTGCATAAGATTCTTGTTGTTATTGAACCTTTGTTGATTGATGAAGACTATTATGCGCGTGTTGAAGGGAGAGAAATTATCTCCAATCTTAGTAAAGCAGCTGGTTTGGCCACTATGATTGCGGCCATGCGTCCGGATATTGATAACATTGATGAATATGTTAGGAACACTACTGCCAGAGCTTTTAGTGTTGTTGCTTCTGCACTTGGTATACCTGCACTGTTGCCCTTTTTGAAAGCTGTGTGTCAGAGCAAGAAGTCGTGGCAAGCACGGCACACTGGAATCAAGATTGTTCAGCAGATTGCCATTTTGATCGGGTGTGCTGTACTTCCCCACTTGAGGTCCCTTGTGGAAATTATAGAGAATGGTCTGAGCGATGAAAATCAGAAGGTTCGGACAATTACTGCTCTATCTCTTGCTGCTCTTGCTGAGGCAGCTGCCCCATACGGTATTGAGAGCTTTGACTCTGTGTTGAAGCCATTGTGGAAGGGTATTAGGTCTCACCGTGGTAAGGTTTTGGCTGCCTTCTTGAAGGCAATTGGTTTTATTATTCCCCTTATGGATGCAATGTATGCAAGTTACTATACAAAGGAAGTGATGGTTGTTTTGATTAGAGAGTTTCAGTCTCCTGATGAAGAGATGAAGAAAATTGTGCTCAAAGTTGTCAAACAGTGTGTGAGTACAGAAGGTGTAGAGCCGGAGTATATAAGAAGTGATATTCTTCCTGAGTTCTTTAAAAACTTTTGGGTTAGAAGGATGGCTTTGGATAGGAGAAACTACAGGCAATTGGTGGAAACAACTGTAGAGATAGCAAACAAAGTGGGTGTTGCTGATATAGTTGGGAGAATTGTTGAGGATCTCAAAGATGAGAGTGAACCGTATAGGAGAATGGTTATGGAGACAATCGAGAAGGTGGTTGTGAACTTGGGTGCATCTGACATTGATGCTCGGTTGGAGGAGCTTCTCATTGATGGTATCCTTTATGCTTTCCAAGAGCAGACCAGTGATGATGCAAATGTGATGCTTAATGGTTTTGGTGCAGTTGTGAATTCTCTTGGTCTGAGGGTGAAACCTTACCTTCCTCAGATTTGTGGTACCATTAAGTGGCGTTTGAATAACAAGAGTGCAAAGGTCAGACAGCAAGCTGCAGATCTTATTTCGAGAATTGCTGTTGTCATGAAGCAGTGCCAAGAGGAGCAACTGATGGGTCATCTTGGTGTTGTCTTGTATGAGTATTTGGGAGAAGAGTATCCAGAAGTTTTGGGATCAATTCTGGGAGCGCTGAAGGCAATTGTGAATGTTATTGGTATGACAAAGATGACTCCTCCTATAAAGGATTTGCTTCCCAGGTTGACTCCAATTTTGAAGAATAGGCATGAGAAAGTCCAGGAGAACTGTATTGACCTTGTTGGTCGTATTGCTGATCGCGGTGCTGAGTTTGTTCCAGCAAGGGAGTGGATGAGGATCTGTTTTGAGCTTCTTGAGATGCTCAAGGCTCATAAGAAGGGTATCCGGCGAGCTACAGTGAATACTTTTGGTTACATTGCCAAAGCCATTGGTCCACAAGATGTCCTCGCAACTCTATTGAACAATCTCAAAGTGCAGGAGCGTCAGAACCGTGTCTGCACCACTGTGGCAATCGCAATAGTAGCTGAAACCTGTTCGCCTTTCACAGTTCTTCCGGCCCTGATGAATGAGTATCGTGTTCCAGAGCTTAATGTGCAGAATGGTGTTTTGAAGTCCCTCTCGTTCTTGTTTGAGTACATCGGTGAAATGGGGAAAGACTATATCTATGCAGTGACCCCGTTGCTTGAGGATGCCCTCATGGATAGAGATCTGGTTCACAGACAAACTGCCGCTTCTGCTGTAAAGCACATGGCTCTGGGAGTAGCGGGATTGGGATGCGAGGACGCTTTAGTCCACTTGCTGAACTACGTCTGGCCAAACATATTTGAGACATCCCCACACGTTATCAACGCAGTCATGGAAGCAATTGAAGGGATGAGAGTGGCATTAGGTGCTGCGGTTGTGCTCAACTACTGTCTCCAGGGGCTGTTCCATCCTGCTAGGAAGGTTAGAGAGGTGTACTGGAAGATTTACAACTCACTGTATATTGGAGCTCAAGATGCTCTTGTTGCATCGTACCCGATGCTTGAGGATGAGGAGCATAACGTATATACCAGGCCCGAGCTAATGATGTTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1267

Amino Acids

141.57

Weight (kDa)

5.66

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SF3b1 PF08920 281 - 411 2.5e-47 Splicing factor 3B subunit 1
TOR1L1_N PF24714 872 - 1048 4.5e-08 TORTIFOLIA1 N-terminal
PPP2R1A-like_HEAT PF22646 1048 - 1120 4.4e-21 PPP2R1A-like HEAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1566
AasI GACNNNNNNGTC 1 cut(s) 3509
Acc36I ACCTGC 1 cut(s) 1816
Acc65I GGTACC 1 cut(s) 2687
AccB1I GGYRCC 6 cut(s) 107, 214, 496, 538, 782, 2687
AccB7I CCANNNNNTGG 2 cut(s) 911, 2697
AccBSI CCGCTC 2 cut(s) 352, 1366
AccI GTMKAC 1 cut(s) 1804
AccII CGCG 3 cut(s) 164, 1651, 3021
AccIII TCCGGA 3 cut(s) 385, 1219, 1726
AclWI GGATC 5 cut(s) 130, 344, 2457, 2866, 3065
AcoI YGGCCR 4 cut(s) 834, 1701, 1716, 3533
AcsI RAATTY 1 cut(s) 2641
AcuI CTGAAG 3 cut(s) 455, 479, 2897
AcyI GRCGYC 6 cut(s) 203, 215, 255, 497, 635, 662
AdeI CACNNNGTG 1 cut(s) 944
AfaI GTAC 8 cut(s) 209, 1584, 1920, 2275, 2689, 3356, 3680, 3737
AfeI AGCGCT 1 cut(s) 2874
AflIII ACRYGT 1 cut(s) 3559
AhdI GACNNNNNGTC 1 cut(s) 1135
AjnI CCWGG 9 cut(s) 637, 664, 826, 940, 1264, 2939, 2979, 3639, 3773
AleI CACNNNNGTG 1 cut(s) 3224
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
Alw21I GWGCWC 3 cut(s) 2250, 3627, 3715
AlwI GGATC 5 cut(s) 130, 344, 2457, 2866, 3065
AlwNI CAGNNNCTG 1 cut(s) 3646
Ama87I CYCGRG 2 cut(s) 986, 3779
Aor13HI TCCGGA 3 cut(s) 385, 1219, 1726
Aor51HI AGCGCT 1 cut(s) 2874
ApoI RAATTY 1 cut(s) 2641
ArsI GACNNNNNNTTYG 2 cut(s) 2938, 2970
AseI ATTAAT 1 cut(s) 996
Asp718I GGTACC 1 cut(s) 2687
AspLEI GCGC 5 cut(s) 122, 217, 499, 1651, 2875
AspS9I GGNCC 8 cut(s) 388, 565, 1129, 1469, 1935, 3152, 3277, 3777
AsuC2I CCSGG 5 cut(s) 373, 732, 780, 987, 988
AsuHPI GGTGA 7 cut(s) 64, 73, 409, 593, 2087, 2671, 3374
AvaI CYCGRG 2 cut(s) 986, 3779
AvaII GGWCC 5 cut(s) 388, 565, 1129, 1935, 3152
AxyI CCTNAGG 2 cut(s) 1254, 1290
BalI TGGCCA 3 cut(s) 836, 1703, 3535
BanI GGYRCC 6 cut(s) 107, 214, 496, 538, 782, 2687
BanII GRGCYC 1 cut(s) 3715
BauI CACGAG 1 cut(s) 1452
BbsI GAAGAC 5 cut(s) 32, 386, 1131, 1524, 1644
Bbv12I GWGCWC 3 cut(s) 2250, 3627, 3715
BbvCI CCTCAGC 2 cut(s) 531, 2022
BceAI ACGGC 4 cut(s) 118, 228, 869, 1880
BcgI CGANNNNNNTGC 6 cut(s) 111, 145, 347, 381, 591, 625
BciT130I CCWGG 9 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641, 3775
BciVI GTATCC 4 cut(s) 622, 2579, 2853, 3113
BcnI CCSGG 5 cut(s) 373, 732, 780, 987, 988
BfaI CTAG 1 cut(s) 3660
BfmI CTRYAG 5 cut(s) 954, 2371, 2394, 2739, 3114
BfoI RGCGCY 3 cut(s) 218, 500, 2876
BfuAI ACCTGC 1 cut(s) 1816
BfuI GTATCC 4 cut(s) 622, 2579, 2853, 3113
BglI GCCNNNNNGGC 1 cut(s) 352
BglII AGATCT 2 cut(s) 2743, 3427
Bme18I GGWCC 5 cut(s) 388, 565, 1129, 1935, 3152
BmeRI GACNNNNNGTC 1 cut(s) 1135
BmeT110I CYCGRG 2 cut(s) 986, 3779
BmgT120I GGNCC 8 cut(s) 388, 565, 1129, 1469, 1935, 3152, 3277, 3777
BmrI ACTGGG 1 cut(s) 704
BmuI ACTGGG 1 cut(s) 704
BpiI GAAGAC 5 cut(s) 32, 386, 1131, 1524, 1644
BpmI CTGGAG 2 cut(s) 744, 3623
Bpu10I CCTNAGC 3 cut(s) 348, 531, 2022
BpuEI CTTGAG 7 cut(s) 1092, 1951, 3068, 3095, 3425, 3699, 3767
BpuMI CCSGG 5 cut(s) 373, 732, 780, 987, 988
Bsa29I ATCGAT 1 cut(s) 297
BsaBI GATNNNNATC 4 cut(s) 312, 1974, 3056, 3426
BsaHI GRCGYC 6 cut(s) 203, 215, 255, 497, 635, 662
BsaI GGTCTC 2 cut(s) 869, 2097
BsaWI WCCGGW 4 cut(s) 333, 385, 1219, 1726
BsaXI ACNNNNNCTCC 6 cut(s) 712, 742, 1174, 1204, 1328, 1358
Bse1I ACTGG 5 cut(s) 568, 699, 1876, 2595, 3686
Bse21I CCTNAGG 2 cut(s) 1254, 1290
Bse3DI GCAATG 3 cut(s) 1313, 2166, 3135
Bse8I GATNNNNATC 4 cut(s) 312, 1974, 3056, 3426
BseAI TCCGGA 3 cut(s) 385, 1219, 1726
BseBI CCWGG 9 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641, 3775
BseCI ATCGAT 1 cut(s) 297
BseJI GATNNNNATC 4 cut(s) 312, 1974, 3056, 3426
BseMI GCAATG 3 cut(s) 1313, 2166, 3135
BseNI ACTGG 5 cut(s) 568, 699, 1876, 2595, 3686
BseRI GAGGAG 9 cut(s) 506, 565, 715, 1346, 1349, 2564, 2801, 2907, 3770
BseYI CCCAGC 3 cut(s) 711, 794, 911
BsgI GTGCAG 6 cut(s) 1779, 1794, 2652, 3202, 3215, 3335
Bsh1236I CGCG 3 cut(s) 164, 1651, 3021
Bsh1285I CGRYCG 1 cut(s) 301
BshNI GGYRCC 6 cut(s) 107, 214, 496, 538, 782, 2687
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 3 cut(s) 2250, 3627, 3715
BsiHKCI CYCGRG 2 cut(s) 986, 3779
BslFI GGGAC 7 cut(s) 578, 632, 662, 1213, 1330, 1921, 3319
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 7 cut(s) 578, 632, 662, 1213, 1330, 1921, 3319
Bso31I GGTCTC 2 cut(s) 869, 2097
BsoBI CYCGRG 2 cut(s) 986, 3779
Bsp1286I GDGCHC 3 cut(s) 2250, 3627, 3715
Bsp13I TCCGGA 3 cut(s) 385, 1219, 1726
Bsp19I CCATGG 1 cut(s) 171
BspDI ATCGAT 1 cut(s) 297
BspEI TCCGGA 3 cut(s) 385, 1219, 1726
BspFNI CGCG 3 cut(s) 164, 1651, 3021
BspHI TCATGA 1 cut(s) 2769
BspMAI CTGCAG 1 cut(s) 2743
BspMI ACCTGC 1 cut(s) 1816
BspPI GGATC 5 cut(s) 130, 344, 2457, 2866, 3065
BspQI GCTCTTC 1 cut(s) 1080
BspT107I GGYRCC 6 cut(s) 107, 214, 496, 538, 782, 2687
BspTNI GGTCTC 2 cut(s) 869, 2097
BsrBI CCGCTC 2 cut(s) 352, 1366
BsrDI GCAATG 3 cut(s) 1313, 2166, 3135
BsrI ACTGG 5 cut(s) 568, 699, 1876, 2595, 3686
BssNAI GTATAC 1 cut(s) 1805
BssNI GRCGYC 6 cut(s) 203, 215, 255, 497, 635, 662
BssSI CACGAG 1 cut(s) 1452
BssT1I CCWWGG 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 1805
Bst2BI CACGAG 1 cut(s) 1452
Bst2UI CCWGG 9 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641, 3775
Bst6I CTCTTC 8 cut(s) 30, 38, 431, 1053, 1080, 1218, 2223, 2832
BstACI GRCGYC 6 cut(s) 203, 215, 255, 497, 635, 662
BstAPI GCANNNNNTGC 3 cut(s) 923, 2165, 3611
BstC8I GCNNGC 5 cut(s) 522, 1468, 1860, 2736, 3111
BstDSI CCRYGG 2 cut(s) 171, 2098
BstEII GGTNACC 1 cut(s) 1272
BstENI CCTNNNNNAGG 1 cut(s) 1110
BstFNI CGCG 3 cut(s) 164, 1651, 3021
BstH2I RGCGCY 3 cut(s) 218, 500, 2876
BstHHI GCGC 5 cut(s) 122, 217, 499, 1651, 2875
BstMCI CGRYCG 1 cut(s) 301
BstNI CCWGG 9 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641, 3775
BstPI GGTNACC 1 cut(s) 1272
BstSFI CTRYAG 5 cut(s) 954, 2371, 2394, 2739, 3114
BstUI CGCG 3 cut(s) 164, 1651, 3021
BstV2I GAAGAC 5 cut(s) 32, 386, 1131, 1524, 1644
BstX2I RGATCY 4 cut(s) 2449, 2743, 3057, 3427
BstXI CCANNNNNNTGG 2 cut(s) 645, 1195
BstYI RGATCY 4 cut(s) 2449, 2743, 3057, 3427
BstZ17I GTATAC 1 cut(s) 1805
Bsu15I ATCGAT 1 cut(s) 297
Bsu36I CCTNAGG 2 cut(s) 1254, 1290
BsuI GTATCC 4 cut(s) 622, 2579, 2853, 3113
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 2 cut(s) 171, 2098
BtgZI GCGATG 1 cut(s) 1983
BtsI GCAGTG 3 cut(s) 901, 2783, 3396
BveI ACCTGC 1 cut(s) 1816
Cac8I GCNNGC 5 cut(s) 522, 1468, 1860, 2736, 3111
CaiI CAGNNNCTG 1 cut(s) 3646
CciI TCATGA 1 cut(s) 2769
CfoI GCGC 5 cut(s) 122, 217, 499, 1651, 2875
Cfr13I GGNCC 8 cut(s) 388, 565, 1129, 1469, 1935, 3152, 3277, 3777
Cfr9I CCCGGG 1 cut(s) 986
ClaI ATCGAT 1 cut(s) 297
CsiI ACCWGGT 1 cut(s) 940
Csp6I GTAC 8 cut(s) 208, 1583, 1919, 2274, 2688, 3355, 3679, 3736
CspCI CAANNNNNGTGG 4 cut(s) 1693, 1728, 2394, 2429
CviAII CATG 7 cut(s) 172, 1720, 2770, 2969, 3418, 3469, 3577
CviQI GTAC 8 cut(s) 208, 1583, 1919, 2274, 2688, 3355, 3679, 3736
DinI GGCGCC 2 cut(s) 216, 498
DraI TTTAAA 1 cut(s) 2329
DraIII CACNNNGTG 1 cut(s) 944
DrdI GACNNNNNNGTC 1 cut(s) 3509
DriI GACNNNNNGTC 1 cut(s) 1135
DseDI GACNNNNNNGTC 1 cut(s) 3509
EaeI YGGCCR 4 cut(s) 834, 1701, 1716, 3533
Eam1104I CTCTTC 8 cut(s) 30, 38, 431, 1053, 1080, 1218, 2223, 2832
Eam1105I GACNNNNNGTC 1 cut(s) 1135
EarI CTCTTC 8 cut(s) 30, 38, 431, 1053, 1080, 1218, 2223, 2832
Ecl136II GAGCTC 1 cut(s) 3713
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 3715
Eco31I GGTCTC 2 cut(s) 869, 2097
Eco47I GGWCC 5 cut(s) 388, 565, 1129, 1935, 3152
Eco47III AGCGCT 1 cut(s) 2874
Eco53kI GAGCTC 1 cut(s) 3713
Eco57I CTGAAG 3 cut(s) 455, 479, 2897
Eco81I CCTNAGG 2 cut(s) 1254, 1290
Eco88I CYCGRG 2 cut(s) 986, 3779
Eco91I GGTNACC 1 cut(s) 1272
EcoICRI GAGCTC 1 cut(s) 3713
EcoNI CCTNNNNNAGG 1 cut(s) 1110
EcoO109I RGGNCCY 1 cut(s) 1935
EcoO65I GGTNACC 1 cut(s) 1272
EcoRI GAATTC 1 cut(s) 2641
EcoRII CCWGG 9 cut(s) 637, 664, 826, 940, 1264, 2939, 2979, 3639, 3773
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 3715
EgeI GGCGCC 2 cut(s) 216, 498
EheI GGCGCC 2 cut(s) 216, 498
ErhI CCWWGG 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 7 cut(s) 175, 1723, 2773, 2972, 3421, 3472, 3580
FalI AAGNNNNNCTT 4 cut(s) 2338, 2370, 3708, 3740
FaqI GGGAC 7 cut(s) 578, 632, 662, 1213, 1330, 1921, 3319
FatI CATG 7 cut(s) 171, 1719, 2769, 2968, 3417, 3468, 3576
FauI CCCGC 2 cut(s) 729, 3478
FblI GTMKAC 1 cut(s) 1804
FriOI GRGCYC 1 cut(s) 3715
FspBI CTAG 1 cut(s) 3660
GlaI GCGC 5 cut(s) 121, 216, 498, 1650, 2874
GsaI CCCAGC 3 cut(s) 715, 798, 915
GsuI CTGGAG 2 cut(s) 744, 3623
HaeII RGCGCY 3 cut(s) 218, 500, 2876
HhaI GCGC 5 cut(s) 122, 217, 499, 1651, 2875
Hin1I GRCGYC 6 cut(s) 203, 215, 255, 497, 635, 662
Hin1II CATG 7 cut(s) 175, 1723, 2773, 2972, 3421, 3472, 3580
Hin6I GCGC 5 cut(s) 120, 215, 497, 1649, 2873
HinP1I GCGC 5 cut(s) 120, 215, 497, 1649, 2873
HincII GTYRAC 1 cut(s) 2946
HindII GTYRAC 1 cut(s) 2946
HindIII AAGCTT 3 cut(s) 461, 821, 1379
HphI GGTGA 7 cut(s) 64, 73, 409, 593, 2087, 2671, 3374
HpyCH4IV ACGT 6 cut(s) 126, 608, 1585, 3528, 3561, 3765
HpySE526I ACGT 6 cut(s) 126, 608, 1585, 3528, 3561, 3765
Hsp92I GRCGYC 6 cut(s) 203, 215, 255, 497, 635, 662
Hsp92II CATG 7 cut(s) 175, 1723, 2773, 2972, 3421, 3472, 3580
HspAI GCGC 5 cut(s) 120, 215, 497, 1649, 2873
KasI GGCGCC 2 cut(s) 214, 496
Kpn2I TCCGGA 3 cut(s) 385, 1219, 1726
KpnI GGTACC 1 cut(s) 2691
LguI GCTCTTC 1 cut(s) 1080
LmnI GCTCC 7 cut(s) 1007, 2551, 2788, 2870, 3199, 3710, 3757
MabI ACCWGGT 1 cut(s) 940
MaeI CTAG 1 cut(s) 3660
MaeII ACGT 6 cut(s) 126, 608, 1585, 3528, 3561, 3765
MaeIII GTNAC 7 cut(s) 79, 772, 946, 1272, 2171, 3131, 3391
MbiI CCGCTC 2 cut(s) 352, 1366
MfeI CAATTG 5 cut(s) 59, 2130, 2378, 2883, 3585
MflI RGATCY 4 cut(s) 2449, 2743, 3057, 3427
MhlI GDGCHC 3 cut(s) 2250, 3627, 3715
MlsI TGGCCA 3 cut(s) 836, 1703, 3535
MluNI TGGCCA 3 cut(s) 836, 1703, 3535
Mly113I GGCGCC 2 cut(s) 215, 497
MlyI GAGTC 9 cut(s) 376, 448, 679, 808, 1153, 1195, 2051, 2908, 2941
MmeI TCCRAC 4 cut(s) 33, 591, 683, 2526
Mox20I TGGCCA 3 cut(s) 836, 1703, 3535
MroI TCCGGA 3 cut(s) 385, 1219, 1726
MscI TGGCCA 3 cut(s) 836, 1703, 3535
MseI TTAA 9 cut(s) 996, 1389, 1395, 1479, 1542, 2328, 2619, 2694, 3309
MslI CAYNNNNRTG 3 cut(s) 1193, 2808, 3224
Msp20I TGGCCA 3 cut(s) 836, 1703, 3535
MspA1I CMGCKG 5 cut(s) 322, 711, 764, 1694, 2030
MunI CAATTG 5 cut(s) 59, 2130, 2378, 2883, 3585
MvaI CCWGG 9 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641, 3775
MvnI CGCG 3 cut(s) 164, 1651, 3021
NarI GGCGCC 2 cut(s) 215, 497
NciI CCSGG 5 cut(s) 373, 732, 780, 987, 988
NcoI CCATGG 1 cut(s) 171
NlaIII CATG 7 cut(s) 175, 1723, 2773, 2972, 3421, 3472, 3580
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 4 cut(s) 79, 772, 946, 3391
OliI CACNNNNGTG 1 cut(s) 3224
PagI TCATGA 1 cut(s) 2769
PciSI GCTCTTC 1 cut(s) 1080
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 6 cut(s) 556, 680, 746, 1228, 1603, 1875
PflMI CCANNNNNTGG 2 cut(s) 911, 2697
PfoI TCCNGGA 1 cut(s) 2979
Ple19I CGATCG 1 cut(s) 301
PleI GAGTC 9 cut(s) 376, 448, 679, 808, 1153, 1195, 2051, 2908, 2941
PluTI GGCGCC 2 cut(s) 218, 500
PpsI GAGTC 9 cut(s) 376, 448, 679, 808, 1153, 1195, 2051, 2908, 2941
PpuMI RGGWCCY 1 cut(s) 1935
PshBI ATTAAT 1 cut(s) 996
PsiI TTATAA 1 cut(s) 1566
Psp124BI GAGCTC 1 cut(s) 3715
Psp5II RGGWCCY 1 cut(s) 1935
Psp6I CCWGG 9 cut(s) 637, 664, 826, 940, 1264, 2939, 2979, 3639, 3773
PspEI GGTNACC 1 cut(s) 1272
PspFI CCCAGC 3 cut(s) 711, 794, 911
PspGI CCWGG 9 cut(s) 637, 664, 826, 940, 1264, 2939, 2979, 3639, 3773
PspPI GGNCC 8 cut(s) 388, 565, 1129, 1469, 1935, 3152, 3277, 3777
PspPPI RGGWCCY 1 cut(s) 1935
PstI CTGCAG 1 cut(s) 2743
PstNI CAGNNNCTG 1 cut(s) 3646
PsuI RGATCY 4 cut(s) 2449, 2743, 3057, 3427
PvuI CGATCG 1 cut(s) 301
PvuII CAGCTG 3 cut(s) 764, 1694, 2030
RsaI GTAC 8 cut(s) 209, 1584, 1920, 2275, 2689, 3356, 3680, 3737
RsaNI GTAC 8 cut(s) 208, 1583, 1919, 2274, 2688, 3355, 3679, 3736
RseI CAYNNNNRTG 3 cut(s) 1193, 2808, 3224
SacI GAGCTC 1 cut(s) 3715
SapI GCTCTTC 1 cut(s) 1080
SaqAI TTAA 9 cut(s) 996, 1389, 1395, 1479, 1542, 2328, 2619, 2694, 3309
Sau96I GGNCC 8 cut(s) 388, 565, 1129, 1469, 1935, 3152, 3277, 3777
SchI GAGTC 9 cut(s) 376, 448, 679, 808, 1153, 1195, 2051, 2908, 2941
SduI GDGCHC 3 cut(s) 2250, 3627, 3715
SexAI ACCWGGT 1 cut(s) 940
SfcI CTRYAG 5 cut(s) 954, 2371, 2394, 2739, 3114
SfoI GGCGCC 2 cut(s) 216, 498
SinI GGWCC 5 cut(s) 388, 565, 1129, 1935, 3152
SmaI CCCGGG 1 cut(s) 988
SmiMI CAYNNNNRTG 3 cut(s) 1193, 2808, 3224
SmlI CTYRAG 7 cut(s) 1107, 1930, 3074, 3083, 3404, 3714, 3746
SmoI CTYRAG 7 cut(s) 1107, 1930, 3074, 3083, 3404, 3714, 3746
SspDI GGCGCC 2 cut(s) 214, 496
SspMI CTAG 1 cut(s) 3660
SstI GAGCTC 1 cut(s) 3715
StyI CCWWGG 1 cut(s) 171
TaiI ACGT 6 cut(s) 129, 611, 1588, 3531, 3564, 3768
TaqI TCGA 8 cut(s) 87, 134, 297, 316, 683, 1555, 2499, 2753
TatI WGTACW 4 cut(s) 1918, 2273, 3354, 3678
TauI GCSGC 8 cut(s) 108, 203, 252, 286, 355, 502, 1718, 3452
TfiI GAWTC 6 cut(s) 556, 680, 746, 1228, 1603, 1875
Tru1I TTAA 9 cut(s) 996, 1389, 1395, 1479, 1542, 2328, 2619, 2694, 3309
Tru9I TTAA 9 cut(s) 996, 1389, 1395, 1479, 1542, 2328, 2619, 2694, 3309
TseFI GTSAC 4 cut(s) 79, 772, 946, 3391
Tsp45I GTSAC 4 cut(s) 79, 772, 946, 3391
TspGWI ACGGA 1 cut(s) 67
TspMI CCCGGG 1 cut(s) 986
Van91I CCANNNNNTGG 2 cut(s) 911, 2697
VpaK11BI GGWCC 5 cut(s) 388, 565, 1129, 1935, 3152
VspI ATTAAT 1 cut(s) 996
XagI CCTNNNNNAGG 1 cut(s) 1110
XapI RAATTY 1 cut(s) 2641
XcmI CCANNNNNNNNNTGG 2 cut(s) 575, 3045
XmaI CCCGGG 1 cut(s) 986
XmiI GTMKAC 1 cut(s) 1804
XspI CTAG 1 cut(s) 3660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.