Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005046

Physical Location & Seq

Genomic Coordinates Forward (+)

13012754 .. 13014118

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0097100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAAATCCCAGATGATCACTTTCCCTACGTTAATATTAGTGCACCCACCAGTCCTGGTATATGCAGCCCTCACAATAACCTCTACTTCTACAGTGTTCCGAGTAGTCCTACCAGAGAAACCTCAACTGGTACTAGTCCATTTGGTTACCAAACTGATCTAAATGAGTGCCCTACACCAATGTCATACCACGACGCCAATGCCTATCTCGATGACTTTGAGTTTGAAACCGGTCTAAGTTTTAGTCTTGATGTTGGTGATCAAAGACTGGTCCAATCGAGCCCGTTTGGTCATGATAGAAAGCCAAGGCAGCGCGGGGATTCACTTCCGACCAGCATGGCATTTGCGGATGAGCTTTTCTGTGATGGGAAAGTCATGCCACTTGCCCCTCCACTCAAGCTTCCACCGCGGCTTCAGAGGAACAGAAATGAAAAGCTGGCAAGCCAAGCAGAAACTGGTGCGTCTGTCCCGGGGTCTCCGAGTAATTTCGTGCTTAAATTGCCATTTGGATATAAGAGGTTGTGGAATGATGATTTTGATCCATTCATGGCGGCATTGAAAAATGTCAAGAAGGAAAAGAAGGAGAAAGCTTCAGCTGCTTCGCCCTCATATGCTACGAACAATCAGACTACGAATGAGCCTGGGGACGAAGACGCAACAACTTCTGCGCCTGAACCGATATCGAGAGAAATGGGTGGACAAATTGTTCCAAAGAGGCAGCTGACTCAGCCGAAAGGAGTCGAGTTTGCAAGGCAAGTCAGACTTATTCAAATGGGCCAGATGAGTAAGTTGGACAAGTTAGGGAAGCAAAGTGAAAGAGATGAGAAAGCAGAATCAATGAGGAAGAAGCCAACATTTCTAAGGAGACTAAGCTTGAAGTCTGGCAGAGCAGCTCATTGTGAGGAGAAAAGGGTATCTCATTCTCATCCTCCTTCTCAACTAAGCAAGATGGCATTGATGAACTACAAGCCCAGAGGGTTACTTTGCTTGGGTTATAAGACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3b1

Protein Analysis

335

Amino Acids

37.32

Weight (kDa)

8.93

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64270
fragaria_vesca	FvH4_2g14010 FvH4_3g24440
malus_domestica	MD17G1162000.v1.1 MD17G1162100.v1.1
prunus_persica	Prupe.8G065000_v2.0.a1 Prupe.8G065000_v2.0.a1
pyrus_communis	pycom17g15510 pycom17g15520
rosa_chinensis	RchiOBHm_Chr5g0043941 RchiOBHm_Chr6g0275901
rosa_laevigata	RLG00000013424 RLG00000034225
rosa_multiflora	Rmu_co8466095.1_g000001 Rmu_sc0002030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00037140 Rroxscaffold_7G00192780
rosa_rugosa	Rorug05G0209100 Rorug06G0097100 Rorug06G0097200
rosa_samantha	Rh5BG301400 Rh5CG329000 Rh5DG310600 Rh6AG208900 Rh6BG213000 Rh6CG215600 Rh6DG205300
rosa_wichuraiana	Rw0G017250 Rw5G027190 Rw6G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
AccII	CGCG	2 cut(s)	315, 409
AciI	CCGC	5 cut(s)	315, 347, 407, 409, 551
AclWI	GGATC	1 cut(s)	533
AcuI	CTGAAG	2 cut(s)	398, 576
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	133
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	227, 559, 770, 877
AhlI	ACTAGT	1 cut(s)	134
AjnI	CCWGG	2 cut(s)	55, 640
AloI	GAACNNNNNNTCC	2 cut(s)	690, 722
AluBI	AGCT	9 cut(s)	355, 400, 436, 590, 596, 721, 873, 893, 1005
AluI	AGCT	9 cut(s)	355, 400, 436, 590, 596, 721, 873, 893, 1005
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	480, 859
Alw44I	GTGCAC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	469
AoxI	GGCC	1 cut(s)	775
ApaLI	GTGCAC	1 cut(s)	42
ApeKI	GCWGC	5 cut(s)	66, 310, 596, 718, 890
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AsiGI	ACCGGT	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	315, 670
AspS9I	GGNCC	2 cut(s)	271, 775
AsuC2I	CCSGG	2 cut(s)	470, 471
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	271
BaeGI	GKGCMC	2 cut(s)	46, 173
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	5 cut(s)	78, 322, 583, 730, 902
BccI	CCATC	2 cut(s)	359, 943
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	2 cut(s)	57, 642
BclI	TGATCA	2 cut(s)	16, 259
BcnI	CCSGG	2 cut(s)	470, 471
BcoDI	GTCTC	2 cut(s)	480, 859
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	2 cut(s)	135, 1006
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	7 cut(s)	67, 311, 410, 552, 597, 719, 891
BlsI	GCNGC	7 cut(s)	68, 312, 411, 553, 598, 720, 892
Bme1390I	CCNGG	4 cut(s)	57, 470, 471, 642
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	271, 775
BmrFI	CCNGG	4 cut(s)	57, 470, 471, 642
BpiI	GAAGAC	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	470, 471
BsaBI	GATNNNNATC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	5 cut(s)	305, 407, 469, 470, 641
BsaWI	WCCGGW	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	4 cut(s)	51, 133, 273, 460
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	57, 642
BseDI	CCNNGG	5 cut(s)	305, 407, 469, 470, 641
BseGI	GGATG	2 cut(s)	355, 925
BseJI	GATNNNNATC	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	740
BseNI	ACTGG	4 cut(s)	51, 133, 273, 460
BseRI	GAGGAG	1 cut(s)	917
BseSI	GKGCMC	2 cut(s)	46, 173
BseXI	GCAGC	5 cut(s)	78, 322, 583, 730, 902
Bsh1236I	CGCG	2 cut(s)	315, 409
BshFI	GGCC	1 cut(s)	777
BshTI	ACCGGT	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	469
BsiSI	CCGG	2 cut(s)	231, 470
BslFI	GGGAC	2 cut(s)	452, 659
BsmAI	GTCTC	2 cut(s)	480, 859
BsmFI	GGGAC	2 cut(s)	452, 659
BsnI	GGCC	1 cut(s)	777
Bso31I	GGTCTC	1 cut(s)	480
BsoBI	CYCGRG	1 cut(s)	469
Bsp1286I	GDGCHC	3 cut(s)	46, 173, 284
Bsp143I	GATC	4 cut(s)	16, 157, 259, 538
BspACI	CCGC	5 cut(s)	315, 347, 407, 409, 551
BspANI	GGCC	1 cut(s)	777
BspCNI	CTCAG	1 cut(s)	739
BspFNI	CGCG	2 cut(s)	315, 409
BspHI	TCATGA	1 cut(s)	292
BspPI	GGATC	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	4 cut(s)	51, 133, 273, 460
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	5 cut(s)	305, 407, 469, 470, 641
BssMI	GATC	4 cut(s)	16, 157, 259, 538
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	2 cut(s)	57, 642
Bst4CI	ACNGT	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	438, 442
BstDEI	CTNAG	5 cut(s)	236, 726, 860, 869, 941
BstDSI	CCRYGG	1 cut(s)	407
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	355, 925
BstFNI	CGCG	2 cut(s)	315, 409
BstHHI	GCGC	2 cut(s)	315, 670
BstKTI	GATC	4 cut(s)	19, 160, 262, 541
BstMAI	GTCTC	2 cut(s)	480, 859
BstMBI	GATC	4 cut(s)	16, 157, 259, 538
BstMWI	GCNNNNNNNGC	6 cut(s)	310, 406, 446, 499, 596, 727
BstNI	CCWGG	2 cut(s)	57, 642
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	4 cut(s)	55, 468, 469, 640
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	2 cut(s)	46, 173
BstUI	CGCG	2 cut(s)	315, 409
BstV1I	GCAGC	5 cut(s)	78, 322, 583, 730, 902
BstV2I	GAAGAC	1 cut(s)	657
BsuRI	GGCC	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	355, 925
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	438, 442
CaiI	CAGNNNCTG	1 cut(s)	455
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	2 cut(s)	315, 670
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	271, 775
Cfr42I	CCGCGG	1 cut(s)	410
Cfr9I	CCCGGG	1 cut(s)	469
CseI	GACGC	3 cut(s)	203, 450, 662
Csp6I	GTAC	1 cut(s)	132
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	4 cut(s)	293, 337, 376, 547
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	5 cut(s)	236, 726, 860, 869, 941
DpnI	GATC	4 cut(s)	18, 159, 261, 540
DpnII	GATC	4 cut(s)	16, 157, 259, 538
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	398, 576
Eco88I	CYCGRG	1 cut(s)	469
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	55, 640
EcoRV	GATATC	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	4 cut(s)	296, 340, 379, 550
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	2 cut(s)	452, 659
FatI	CATG	4 cut(s)	292, 336, 375, 546
FauI	CCCGC	1 cut(s)	308
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	2 cut(s)	16, 259
Fnu4HI	GCNGC	7 cut(s)	67, 311, 410, 552, 597, 719, 891
FokI	GGATG	2 cut(s)	362, 912
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	7 cut(s)	67, 311, 410, 552, 597, 719, 891
FspBI	CTAG	2 cut(s)	135, 1006
GlaI	GCGC	2 cut(s)	314, 669
GluI	GCNGC	7 cut(s)	67, 311, 410, 552, 597, 719, 891
HaeIII	GGCC	1 cut(s)	777
HapII	CCGG	2 cut(s)	231, 470
HgaI	GACGC	3 cut(s)	203, 450, 662
HhaI	GCGC	2 cut(s)	315, 670
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	296, 340, 379, 550
Hin6I	GCGC	2 cut(s)	313, 668
HinP1I	GCGC	2 cut(s)	313, 668
HindIII	AAGCTT	3 cut(s)	398, 588, 871
HinfI	GANTC	4 cut(s)	320, 724, 738, 833
HpaII	CCGG	2 cut(s)	231, 470
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	44, 698
Hpy188I	TCNGA	6 cut(s)	102, 330, 417, 480, 627, 761
Hpy188III	TCNNGA	5 cut(s)	209, 248, 293, 568, 684
Hpy8I	GTNNAC	2 cut(s)	44, 698
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	565, 574, 942
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	44, 66, 749
HpyF10VI	GCNNNNNNNGC	6 cut(s)	310, 406, 446, 499, 596, 727
HpyF3I	CTNAG	5 cut(s)	236, 726, 860, 869, 941
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	296, 340, 379, 550
HspAI	GCGC	2 cut(s)	313, 668
Ksp22I	TGATCA	2 cut(s)	16, 259
KspI	CCGCGG	1 cut(s)	410
Kzo9I	GATC	4 cut(s)	16, 157, 259, 538
Lsp1109I	GCAGC	5 cut(s)	78, 322, 583, 730, 902
MaeI	CTAG	2 cut(s)	135, 1006
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	146, 978
MalI	GATC	4 cut(s)	18, 159, 261, 540
MboI	GATC	4 cut(s)	16, 157, 259, 538
MboII	GAAGA	2 cut(s)	662, 856
MhlI	GDGCHC	3 cut(s)	46, 173, 284
MluCI	AATT	3 cut(s)	484, 497, 702
MlyI	GAGTC	2 cut(s)	718, 747
MmeI	TCCRAC	2 cut(s)	353, 771
MseI	TTAA	2 cut(s)	33, 495
MspA1I	CMGCKG	3 cut(s)	409, 596, 721
MspI	CCGG	2 cut(s)	231, 470
MspR9I	CCNGG	4 cut(s)	57, 470, 471, 642
MvaI	CCWGG	2 cut(s)	57, 642
MvnI	CGCG	2 cut(s)	315, 409
MwoI	GCNNNNNNNGC	6 cut(s)	310, 406, 446, 499, 596, 727
NciI	CCSGG	2 cut(s)	470, 471
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	4 cut(s)	16, 157, 259, 538
NlaIII	CATG	4 cut(s)	296, 340, 379, 550
PagI	TCATGA	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	320, 833
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	7 cut(s)	68, 312, 411, 553, 598, 720, 892
PleI	GAGTC	2 cut(s)	718, 746
PpsI	GAGTC	2 cut(s)	718, 746
PsiI	TTATAA	1 cut(s)	996
Psp6I	CCWGG	2 cut(s)	55, 640
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	55, 640
PspPI	GGNCC	2 cut(s)	271, 775
PstNI	CAGNNNCTG	1 cut(s)	455
PvuII	CAGCTG	2 cut(s)	596, 721
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SacII	CCGCGG	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	33, 495
SatI	GCNGC	7 cut(s)	67, 311, 410, 552, 597, 719, 891
Sau3AI	GATC	4 cut(s)	16, 157, 259, 538
Sau96I	GGNCC	2 cut(s)	271, 775
SchI	GAGTC	2 cut(s)	718, 747
ScrFI	CCNGG	4 cut(s)	57, 470, 471, 642
SduI	GDGCHC	3 cut(s)	46, 173, 284
SfcI	CTRYAG	1 cut(s)	91
Sfr303I	CCGCGG	1 cut(s)	410
SgrBI	CCGCGG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	271
SmaI	CCCGGG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	3 cut(s)	484, 497, 702
SsiI	CCGC	5 cut(s)	315, 347, 407, 409, 551
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	135, 1006
StyD4I	CCNGG	4 cut(s)	55, 468, 469, 640
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	4 cut(s)	210, 278, 683, 741
TasI	AATT	3 cut(s)	484, 497, 702
TauI	GCSGC	2 cut(s)	412, 554
TfiI	GAWTC	2 cut(s)	320, 833
Tru1I	TTAA	2 cut(s)	33, 495
Tru9I	TTAA	2 cut(s)	33, 495
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	5 cut(s)	66, 310, 596, 718, 890
TspDTI	ATGAA	3 cut(s)	444, 535, 974
TspMI	CCCGGG	1 cut(s)	469
TspRI	CASTG	1 cut(s)	100
VneI	GTGCAC	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XmaI	CCCGGG	1 cut(s)	469
XspI	CTAG	2 cut(s)	135, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.