Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005046

Physical Location & Seq

Genomic Coordinates Reverse (-)

13015744 .. 13016365

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0097200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGTTCCAGTTTTGCACAAGCACTTTCTGCAATGCTGCTAATTGCTTCAATGGTGGCAGTTTGCACTGCCAACAAGGATTGGAAGCACGGGAACTACACCGGTTGGGGTTCTAACCATGGTCCATATCACCTTAACACGACAAACGGACCCAACAAGATCGTTGTGGGTGGTTCGGACTGGCATTATGGTTTTAACTACGCAGATTGGTCTTTGAAAAATAACTCATTTTACGTCCAGGACACTCTAGTTTTCAAGTATGATCCACCAAACGACACCATACGTCCTCATAGCGTGTACTTGCTACCAAACCTTTGGAGCTTCATAAACTGCGACTTTAGCCAGGCCAGGATGGTGGGAAGTCCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3b1

Protein Analysis

123

Amino Acids

13.74

Weight (kDa)

6.95

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64270
fragaria_vesca	FvH4_2g14010 FvH4_3g24440
malus_domestica	MD17G1162000.v1.1 MD17G1162100.v1.1
prunus_persica	Prupe.8G065000_v2.0.a1 Prupe.8G065000_v2.0.a1
pyrus_communis	pycom17g15510 pycom17g15520
rosa_chinensis	RchiOBHm_Chr5g0043941 RchiOBHm_Chr6g0275901
rosa_laevigata	RLG00000013424 RLG00000034225
rosa_multiflora	Rmu_co8466095.1_g000001 Rmu_sc0002030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00037140 Rroxscaffold_7G00192780
rosa_rugosa	Rorug05G0209100 Rorug06G0097100 Rorug06G0097200
rosa_samantha	Rh5BG301400 Rh5CG329000 Rh5DG310600 Rh6AG208900 Rh6BG213000 Rh6CG215600 Rh6DG205300
rosa_wichuraiana	Rw0G017250 Rw5G027190 Rw6G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	257
AfaI	GTAC	1 cut(s)	299
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	51, 217, 256
AjnI	CCWGG	3 cut(s)	237, 342, 347
AluBI	AGCT	1 cut(s)	321
AluI	AGCT	1 cut(s)	321
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	37
AsiGI	ACCGGT	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	122, 149
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	122, 149
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	3 cut(s)	239, 344, 349
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	3 cut(s)	239, 344, 349
Bme18I	GGWCC	2 cut(s)	122, 149
BmgT120I	GGNCC	2 cut(s)	122, 149
BmiI	GGNNCC	2 cut(s)	7, 151
BmrFI	CCNGG	3 cut(s)	239, 344, 349
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	9, 185
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	239, 344, 349
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	9, 185
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	347
BshTI	ACCGGT	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BsnI	GGCC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	159, 262
Bsp19I	CCATGG	1 cut(s)	118
BspANI	GGCC	1 cut(s)	347
BspLI	GGNNCC	2 cut(s)	7, 151
BspPI	GGATC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	9, 185
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	159, 262
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	3 cut(s)	239, 344, 349
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	357
BstKTI	GATC	2 cut(s)	162, 265
BstMBI	GATC	2 cut(s)	159, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 339
BstNI	CCWGG	3 cut(s)	239, 344, 349
BstSCI	CCNGG	3 cut(s)	237, 342, 347
BstV1I	GCAGC	1 cut(s)	24
BstXI	CCANNNNNNTGG	2 cut(s)	315, 355
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	122, 149
Csp6I	GTAC	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	2 cut(s)	119, 369
CviJI	RGCY	3 cut(s)	321, 342, 347
CviKI_1	RGCY	3 cut(s)	321, 342, 347
CviQI	GTAC	1 cut(s)	298
DpnI	GATC	2 cut(s)	161, 264
DpnII	GATC	2 cut(s)	159, 262
Eco130I	CCWWGG	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	122, 149
EcoRII	CCWGG	3 cut(s)	237, 342, 347
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	122, 372
FaiI	YATR	8 cut(s)	120, 127, 189, 261, 281, 291, 326, 370
FatI	CATG	2 cut(s)	118, 368
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	2 cut(s)	122, 372
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	298
HpyCH4IV	ACGT	2 cut(s)	234, 283
HpyCH4V	TGCA	3 cut(s)	17, 32, 66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 339
HpySE526I	ACGT	2 cut(s)	234, 283
Hsp92II	CATG	2 cut(s)	122, 372
Kzo9I	GATC	2 cut(s)	159, 262
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	9 cut(s)	22, 115, 166, 224, 251, 329, 334, 356, 361
Lsp1109I	GCAGC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	234, 283
MalI	GATC	2 cut(s)	161, 264
MboI	GATC	2 cut(s)	159, 262
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	1 cut(s)	297
MseI	TTAA	2 cut(s)	135, 195
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	239, 344, 349
MvaI	CCWGG	3 cut(s)	239, 344, 349
MwoI	GCNNNNNNNGC	2 cut(s)	29, 339
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	2 cut(s)	159, 262
NlaIII	CATG	2 cut(s)	122, 372
NlaIV	GGNNCC	2 cut(s)	7, 151
PfoI	TCCNGGA	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	39
Psp6I	CCWGG	3 cut(s)	237, 342, 347
PspGI	CCWGG	3 cut(s)	237, 342, 347
PspN4I	GGNNCC	2 cut(s)	7, 151
PspPI	GGNCC	2 cut(s)	122, 149
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	2 cut(s)	135, 195
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	159, 262
Sau96I	GGNCC	2 cut(s)	122, 149
ScrFI	CCNGG	3 cut(s)	239, 344, 349
SetI	ASST	5 cut(s)	135, 237, 286, 315, 323
SinI	GGWCC	2 cut(s)	122, 149
Sse9I	AATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	3 cut(s)	237, 342, 347
StyI	CCWWGG	1 cut(s)	118
TaiI	ACGT	2 cut(s)	237, 286
TasI	AATT	1 cut(s)	42
TatI	WGTACW	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	135, 195
Tru9I	TTAA	2 cut(s)	135, 195
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	122, 149
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.