Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005046

Physical Location & Seq

Genomic Coordinates Forward (+)

54163636 .. 54168410

Gene Structure 4775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2829 bp

ATGAGAAGGAGGAATCGGTGGGACGAGACACCAATGCTAGATGCTCCGATTTTGGATTCCGACGCCACTCCAATTCTTTCATATACAGCCACGCCGACTCCGAAAAGTTCAAGGTGGGACCAGACGCCCAAGGCGGCGGCGGCTGCGGCGGCTTACGCACCTGGTGTGACTCCCTTTGGCGGAGCTGGGATTGCTACGCCGACGCCGGGAGCTTTCAAGGCCATCACTCAGGAGGAGAATTTGAGTGATGAACAATTGGATGCTATGATTCCGTCAGGGTATAAGATAATGGACCCTCCGGCGGGGGAAGAGAATGAGGAGTTGTCTGCGGAGGAGGTGAAAGATAGGAGGATTATGAAGCTTTTGCTCAAGGTTAAGAACGGCACGCCGCAGCAGAGGAAGGCAGCATTGAGGCAGATCACTGAGAAGGCTGTTGACTTTGGTGCCGGGCCGTTGTTTGACCGCATTCTGCCTTTGCTGATGCAACAGAATGGATCAGACATGGACCAGGAGAGGCATCTTCTTGTGAAGGGTATTGATGAAGTTGACGAATATGTCAGGAATACTACTGCTAGGGCTTTCAGTGTTGTTGCTTATGCTGTAGGTATTCCTGCACTCTTGCCGTTTGTGAAAGCTTCGCTGGTGGAGATTATAGAACACGGTCTTAGTGATGAAAATCAGAGGGTCCGGACAATTACTGCTCTATCTGTTGCTGCTCTTGCTGAGGCTGCTGCCCCATATGGTATTGAAAGCTTTGACAATGTATTGAAGCCATTGTGGCAGGGTACTAGGACTCACCGCGGTAAGGTTTTGGCAGCGTTCTTGAAGGCAATTGGCTTTGTTATTCCTCTTATGGATGAAAAGTATGCGAACGGTGTAGAGCCTGAATATATAAGACATCATATTCTTCCTGAGTTCTTCAGAAACTTTTGGATTAGAAGGATGGCTTTGGATAGAAGAAACTACAGGCAACTAGTTGAAACAACTGTGGAGCTAGCAAACAAAGTGGGTGCTTCTGATGTAATAGGGAGAATTGTTGAGGATCTCAAAGATGACAGTGAACCATATAGACAAATGGTTGTAGAGACAATTGAGAAGGTGGTTGTAAATTTAGGTGCTTCTGATATTCATGATAGGTTGGAGGAGCTTCTCATTGATGGTATTCTTTACGCCTTCCAAGAGCAGACCAGTGACGATGCAAATGTGATGCTTAGCGGGTTTGGTGCAGTTGTGAATTCTCTTGGCCAGAGGGTGAAATCGTACCTTCCCCAGATTTGTGGTATCATCAAGTGGCGCTTGAATAACAAGAGTGCAAAGTATTTGGGAGAAGAGTACCCTGAAGTTCTAGGATCAATTCTGGGAGCATTGAAGGCAATTGTCAATGTTATTGGTATGACAAAGATGACTCCTCCTATAAAGGATCTGATTCCCAGGTTGGCTCCAATTCTGAAGAATAGGCATGAGAAAGTTCAGGAGAACTGTATTGACCTTGTTGGTCGCATTGCTGACCGCTGCGCCGAGTTTGTTCCAGCAAGAGAGTGGATGAGGATTTGTTTCGAGCTTCTTGAGATGCTGAAAGCTCATAAGAAGGGTATCCGGCGAGCTACTGTGAACACTTTTGGGTACATTGCAAAAGCCATTGGCCCACAAGATGTCCTGGCAACTCTCCTGAATAATCTTAAGGTGCAGGAGTGTCAGAATCGTGTTTGTACGACTGTAGCAATTGCAATAGTAGCTGAAACATGTGCACCTTTTACAGTTCTGCCAGCTCTGATGAATGAGTACCGTGTTCCAGAGCTTAATGTGCGGAATGGTGTTTTGAAATCCCTCTCTTTCATTTTTGAGTACATTGGTGAAATGGGGAAAAAATATATATATGCAGTGACCCCATTACTTGAGGATGCCCTCATGGACAGAGATCTGGTTCACAGGCAAACTGCAGCTTCTGTTGTCAAGCACGTGGCTTTGGGAGTAGCTGGATTGGGTTGTGAGGAGGCGTTAGTCCACTTGCTGAACTATGTCTGGCCAAACATATTTGAGACATCCCCACATGTTATAAATGCTGTTATGGAAGCCATTGAAGGGATGAGGTTGGCTTTGGGTCCTGCTGTTGTTCTCAATTACTGTCTCCAGGGGCTGTTCCATCCTGCTAGGAAGGTTAGGGAGGCGTACTGGAAGATTTACAAGTCACTCTATATTGGAGCTCAAGATGCTCTTGTGGCAGCCTACCCTTTGCTGGAGGACGAGGAGCATAATGTGTATACTAGGCCAGAGCTGACAATATTTTGGGAAGAACTGGAGGTGGCTGATTTGGGGTTTCCAAAGTGGTTGAATACAGGCAAAACCAGTGCTGGGAGTGAGACATCAGCTACAACTCTAGATTGGGCAATGTCAGAACTGATGAAACATCCAAGAATCATGAAAAGGGCACAGGGTGAGAATGTGGAGAGAGGGTGTGAGATTGATGGATATGAAACACCTGTCAAAACAAAGGTAATTGTGAATGCTTGGGCAATCGGAAGAGATCCCAATTACTGGACTGAGCCCGAGACCTTTTATCCAGAGGGATTCCTTGATAGCTCTTTTGACTACCAAGGAACAAACTTTGAATATATCCCATTTGGTGCTGGAAGGAGAATTTGCCCTGGCATATTATACGGTCTGGCAAATGTTGAACTCCCACTAGCATTGTTGTTATATCATTTTGATTGGAAACTCCCTAATGGAATGAAGAATGAGGACTTGGACATGACTGAGGACTTTGGCATTGCAGTCAGCAGAAAAGAAGATCTTCATTTGATTGCCACTCCATGTCATTCCTCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3b1

Protein Analysis

942

Amino Acids

105.21

Weight (kDa)

5.51

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3b1	PF08920	32 - 102	9.5e-10	Splicing factor 3B subunit 1
PPP2R1A-like_HEAT	PF22646	545 - 617	3.6e-19	PPP2R1A-like HEAT repeat
p450	PF00067	815 - 926	1.7e-25	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64270
fragaria_vesca	FvH4_2g14010 FvH4_3g24440
malus_domestica	MD17G1162000.v1.1 MD17G1162100.v1.1
prunus_persica	Prupe.8G065000_v2.0.a1 Prupe.8G065000_v2.0.a1
pyrus_communis	pycom17g15510 pycom17g15520
rosa_chinensis	RchiOBHm_Chr5g0043941 RchiOBHm_Chr6g0275901
rosa_laevigata	RLG00000013424 RLG00000034225
rosa_multiflora	Rmu_co8466095.1_g000001 Rmu_sc0002030.1_g000005
rosa_roxburghii	Rroxscaffold_1G00037140 Rroxscaffold_7G00192780
rosa_rugosa	Rorug05G0209100 Rorug06G0097100 Rorug06G0097200
rosa_samantha	Rh5BG301400 Rh5CG329000 Rh5DG310600 Rh6AG208900 Rh6BG213000 Rh6CG215600 Rh6DG205300
rosa_wichuraiana	Rw0G017250 Rw5G027190 Rw6G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2057
AasI	GACNNNNNNGTC	1 cut(s)	554
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	2535
AccI	GTMKAC	1 cut(s)	2261
AccII	CGCG	1 cut(s)	801
AccIII	TCCGGA	1 cut(s)	687
AclWI	GGATC	5 cut(s)	502, 1050, 1357, 1428, 2519
AcoI	YGGCCR	2 cut(s)	1243, 2024
AcsI	RAATTY	4 cut(s)	238, 1108, 1234, 2637
AcuI	CTGAAG	3 cut(s)	904, 1359, 1469
AcvI	CACGTG	1 cut(s)	1960
AcyI	GRCGYC	3 cut(s)	63, 125, 203
AdeI	CACNNNGTG	2 cut(s)	164, 2435
AfaI	GTAC	8 cut(s)	787, 1262, 1334, 1625, 1711, 1784, 1847, 2171
AfiI	CCNNNNNNNGG	9 cut(s)	179, 206, 301, 302, 805, 2082, 2236, 2352, 2535
AflII	CTTAAG	1 cut(s)	1679
AflIII	ACRYGT	2 cut(s)	1742, 2050
AhlI	ACTAGT	1 cut(s)	973
AjnI	CCWGG	6 cut(s)	160, 507, 1430, 1656, 2130, 2644
AjuI	GAANNNNNNNTTGG	2 cut(s)	2726, 2758
Alw21I	GWGCWC	2 cut(s)	1750, 2206
Alw26I	GTCTC	6 cut(s)	20, 1079, 2033, 2132, 2354, 2543
Alw44I	GTGCAC	1 cut(s)	1746
AlwI	GGATC	5 cut(s)	502, 1050, 1357, 1428, 2519
AlwNI	CAGNNNCTG	2 cut(s)	1946, 2137
Ama87I	CYCGRG	1 cut(s)	2546
Aor13HI	TCCGGA	1 cut(s)	687
AoxI	GGCC	6 cut(s)	219, 449, 1243, 1642, 2024, 2267
ApaLI	GTGCAC	1 cut(s)	1746
ApoI	RAATTY	4 cut(s)	238, 1108, 1234, 2637
Asp700I	GAANNNNTTC	1 cut(s)	2790
AspLEI	GCGC	2 cut(s)	1296, 1517
AspS9I	GGNCC	7 cut(s)	118, 292, 449, 505, 685, 1643, 2102
AsuC2I	CCSGG	2 cut(s)	207, 448
AsuHPI	GGTGA	5 cut(s)	349, 788, 1264, 1865, 2447
AsuNHI	GCTAGC	1 cut(s)	994
AvaI	CYCGRG	1 cut(s)	2546
AvaII	GGWCC	5 cut(s)	118, 292, 505, 685, 2102
BaeGI	GKGCMC	2 cut(s)	1750, 2431
BalI	TGGCCA	2 cut(s)	1245, 2026
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	2 cut(s)	2206, 2547
BbrPI	CACGTG	1 cut(s)	1960
Bbv12I	GWGCWC	2 cut(s)	1750, 2206
BbvCI	CCTCAGC	1 cut(s)	723
BccI	CCATC	5 cut(s)	230, 937, 1151, 2151, 2459
BceAI	ACGGC	3 cut(s)	397, 436, 607
BciT130I	CCWGG	6 cut(s)	162, 509, 1432, 1658, 2132, 2646
BciVI	GTATCC	1 cut(s)	1604
BcnI	CCSGG	2 cut(s)	207, 448
BcoDI	GTCTC	6 cut(s)	20, 1079, 2033, 2132, 2354, 2543
BcuI	ACTAGT	1 cut(s)	973
BfmI	CTRYAG	4 cut(s)	600, 964, 1716, 1938
BfoI	RGCGCY	1 cut(s)	1297
BfrI	CTTAAG	1 cut(s)	1679
BfuI	GTATCC	1 cut(s)	1604
BglI	GCCNNNNNGGC	1 cut(s)	778
BglII	AGATCT	2 cut(s)	1918, 2788
BlpI	GCTNAGC	1 cut(s)	1211
Bme1390I	CCNGG	8 cut(s)	162, 207, 448, 509, 1432, 1658, 2132, 2646
Bme18I	GGWCC	5 cut(s)	118, 292, 505, 685, 2102
BmeT110I	CYCGRG	1 cut(s)	2546
BmgT120I	GGNCC	7 cut(s)	118, 292, 449, 505, 685, 1643, 2102
BmiI	GGNNCC	6 cut(s)	119, 294, 445, 686, 1440, 2103
BmrFI	CCNGG	8 cut(s)	162, 207, 448, 509, 1432, 1658, 2132, 2646
BmsI	GCATC	9 cut(s)	31, 250, 471, 526, 1186, 1197, 1560, 1891, 2200
BmtI	GCTAGC	1 cut(s)	998
BpmI	CTGGAG	3 cut(s)	2114, 2258, 2318
Bpu10I	CCTNAGC	1 cut(s)	723
Bpu1102I	GCTNAGC	1 cut(s)	1211
BpuEI	CTTGAG	4 cut(s)	353, 1586, 1916, 2190
BpuMI	CCSGG	2 cut(s)	207, 448
BsaAI	YACGTR	1 cut(s)	1960
BsaBI	GATNNNNATC	1 cut(s)	675
BsaHI	GRCGYC	3 cut(s)	63, 125, 203
BsaI	GGTCTC	1 cut(s)	2543
BsaJI	CCNNGG	6 cut(s)	129, 799, 1430, 2131, 2593, 2644
BsaWI	WCCGGW	1 cut(s)	687
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 2438, 2468
Bsc4I	CCNNNNNNNGG	9 cut(s)	179, 206, 301, 302, 805, 2082, 2236, 2352, 2535
Bse1I	ACTGG	5 cut(s)	1188, 2177, 2301, 2346, 2540
Bse3DI	GCAATG	4 cut(s)	1500, 1626, 2394, 2766
Bse8I	GATNNNNATC	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	687
BseBI	CCWGG	6 cut(s)	162, 509, 1432, 1658, 2132, 2646
BseDI	CCNNGG	6 cut(s)	129, 799, 1430, 2131, 2593, 2644
BseGI	GGATG	9 cut(s)	265, 862, 948, 1548, 1906, 2042, 2091, 2143, 2407
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	9 cut(s)	179, 206, 301, 302, 805, 2082, 2236, 2352, 2535
BseMI	GCAATG	4 cut(s)	1500, 1626, 2394, 2766
BseMII	CTCAG	6 cut(s)	242, 414, 714, 903, 2532, 2745
BseNI	ACTGG	5 cut(s)	1188, 2177, 2301, 2346, 2540
BseRI	GAGGAG	7 cut(s)	248, 332, 347, 1157, 1398, 2006, 2261
BseSI	GKGCMC	2 cut(s)	1750, 2431
BseYI	CCCAGC	2 cut(s)	185, 2351
BsgI	GTGCAG	3 cut(s)	597, 1245, 1706
Bsh1236I	CGCG	1 cut(s)	801
BshFI	GGCC	6 cut(s)	221, 451, 1245, 1644, 2026, 2269
BshNI	GGYRCC	1 cut(s)	443
BsiHKAI	GWGCWC	2 cut(s)	1750, 2206
BsiHKCI	CYCGRG	1 cut(s)	2546
BsiSI	CCGG	5 cut(s)	206, 299, 447, 688, 1597
BslFI	GGGAC	2 cut(s)	35, 131
BslI	CCNNNNNNNGG	9 cut(s)	179, 206, 301, 302, 805, 2082, 2236, 2352, 2535
BsmAI	GTCTC	6 cut(s)	20, 1079, 2033, 2132, 2354, 2543
BsmFI	GGGAC	2 cut(s)	35, 131
BsmI	GAATGC	2 cut(s)	465, 2509
BsnI	GGCC	6 cut(s)	221, 451, 1245, 1644, 2026, 2269
Bso31I	GGTCTC	1 cut(s)	2543
BsoBI	CYCGRG	1 cut(s)	2546
Bsp1286I	GDGCHC	4 cut(s)	1750, 2206, 2431, 2547
Bsp13I	TCCGGA	1 cut(s)	687
Bsp143I	GATC	8 cut(s)	417, 494, 1042, 1349, 1420, 1918, 2524, 2788
Bsp1720I	GCTNAGC	1 cut(s)	1211
BspANI	GGCC	6 cut(s)	221, 451, 1245, 1644, 2026, 2269
BspCNI	CTCAG	6 cut(s)	241, 415, 715, 904, 2533, 2746
BspEI	TCCGGA	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	801
BspHI	TCATGA	2 cut(s)	1129, 2418
BspLI	GGNNCC	6 cut(s)	119, 294, 445, 686, 1440, 2103
BspMAI	CTGCAG	1 cut(s)	1942
BspOI	GCTAGC	1 cut(s)	998
BspPI	GGATC	5 cut(s)	502, 1050, 1357, 1428, 2519
BspT107I	GGYRCC	1 cut(s)	443
BspTI	CTTAAG	1 cut(s)	1679
BspTNI	GGTCTC	1 cut(s)	2543
BsrDI	GCAATG	4 cut(s)	1500, 1626, 2394, 2766
BsrI	ACTGG	5 cut(s)	1188, 2177, 2301, 2346, 2540
BssECI	CCNNGG	6 cut(s)	129, 799, 1430, 2131, 2593, 2644
BssMI	GATC	8 cut(s)	417, 494, 1042, 1349, 1420, 1918, 2524, 2788
BssNAI	GTATAC	1 cut(s)	2262
BssNI	GRCGYC	3 cut(s)	63, 125, 203
BssT1I	CCWWGG	2 cut(s)	129, 2593
Bst1107I	GTATAC	1 cut(s)	2262
Bst2UI	CCWGG	6 cut(s)	162, 509, 1432, 1658, 2132, 2646
Bst6I	CTCTTC	3 cut(s)	303, 1323, 2515
BstACI	GRCGYC	3 cut(s)	63, 125, 203
BstAFI	CTTAAG	1 cut(s)	1679
BstBAI	YACGTR	1 cut(s)	1960
BstC8I	GCNNGC	4 cut(s)	386, 996, 1602, 1767
BstDEI	CTNAG	8 cut(s)	228, 423, 665, 723, 912, 1211, 2541, 2754
BstDSI	CCRYGG	1 cut(s)	799
BstF5I	GGATG	9 cut(s)	265, 862, 948, 1548, 1906, 2042, 2091, 2143, 2407
BstFNI	CGCG	1 cut(s)	801
BstH2I	RGCGCY	1 cut(s)	1297
BstHHI	GCGC	2 cut(s)	1296, 1517
BstKTI	GATC	8 cut(s)	420, 497, 1045, 1352, 1423, 1921, 2527, 2791
BstMAI	GTCTC	6 cut(s)	20, 1079, 2033, 2132, 2354, 2543
BstMBI	GATC	8 cut(s)	417, 494, 1042, 1349, 1420, 1918, 2524, 2788
BstNI	CCWGG	6 cut(s)	162, 509, 1432, 1658, 2132, 2646
BstNSI	RCATGY	2 cut(s)	1746, 2054
BstSCI	CCNGG	8 cut(s)	160, 205, 446, 507, 1430, 1656, 2130, 2644
BstSFI	CTRYAG	4 cut(s)	600, 964, 1716, 1938
BstSLI	GKGCMC	2 cut(s)	1750, 2431
BstUI	CGCG	1 cut(s)	801
BstX2I	RGATCY	5 cut(s)	1042, 1420, 1918, 2524, 2788
BstXI	CCANNNNNNTGG	1 cut(s)	1277
BstYI	RGATCY	5 cut(s)	1042, 1420, 1918, 2524, 2788
BstZ17I	GTATAC	1 cut(s)	2262
BsuI	GTATCC	1 cut(s)	1604
BsuRI	GGCC	6 cut(s)	221, 451, 1245, 1644, 2026, 2269
BtgI	CCRYGG	1 cut(s)	799
BtsCI	GGATG	9 cut(s)	265, 862, 948, 1548, 1906, 2042, 2091, 2143, 2407
BtsI	GCAGTG	1 cut(s)	1887
BtsIMutI	CAGTG	6 cut(s)	420, 589, 1063, 1195, 1887, 2353
Cac8I	GCNNGC	4 cut(s)	386, 996, 1602, 1767
CaiI	CAGNNNCTG	2 cut(s)	1946, 2137
CciI	TCATGA	2 cut(s)	1129, 2418
CfoI	GCGC	2 cut(s)	1296, 1517
Cfr13I	GGNCC	7 cut(s)	118, 292, 449, 505, 685, 1643, 2102
Cfr42I	CCGCGG	1 cut(s)	802
CseI	GACGC	3 cut(s)	71, 133, 211
CsiI	ACCWGGT	1 cut(s)	160
Csp6I	GTAC	8 cut(s)	786, 1261, 1333, 1624, 1710, 1783, 1846, 2170
CspCI	CAANNNNNGTGG	4 cut(s)	987, 1022, 2670, 2705
CviAII	CATG	9 cut(s)	502, 1130, 1460, 1743, 1909, 2051, 2419, 2749, 2811
CviQI	GTAC	8 cut(s)	786, 1261, 1333, 1624, 1710, 1783, 1846, 2170
DdeI	CTNAG	8 cut(s)	228, 423, 665, 723, 912, 1211, 2541, 2754
DpnI	GATC	8 cut(s)	419, 496, 1044, 1351, 1422, 1920, 2526, 2790
DpnII	GATC	8 cut(s)	417, 494, 1042, 1349, 1420, 1918, 2524, 2788
DraIII	CACNNNGTG	2 cut(s)	164, 2435
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	2 cut(s)	1243, 2024
Eam1104I	CTCTTC	3 cut(s)	303, 1323, 2515
EarI	CTCTTC	3 cut(s)	303, 1323, 2515
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	2204
Eco130I	CCWWGG	2 cut(s)	129, 2593
Eco24I	GRGCYC	2 cut(s)	2206, 2547
Eco31I	GGTCTC	1 cut(s)	2543
Eco47I	GGWCC	5 cut(s)	118, 292, 505, 685, 2102
Eco53kI	GAGCTC	1 cut(s)	2204
Eco57I	CTGAAG	3 cut(s)	904, 1359, 1469
Eco72I	CACGTG	1 cut(s)	1960
Eco88I	CYCGRG	1 cut(s)	2546
EcoICRI	GAGCTC	1 cut(s)	2204
EcoO109I	RGGNCCY	1 cut(s)	2102
EcoRI	GAATTC	1 cut(s)	1234
EcoRII	CCWGG	6 cut(s)	160, 507, 1430, 1656, 2130, 2644
EcoT14I	CCWWGG	2 cut(s)	129, 2593
EcoT38I	GRGCYC	2 cut(s)	2206, 2547
ErhI	CCWWGG	2 cut(s)	129, 2593
FaeI	CATG	9 cut(s)	505, 1133, 1463, 1746, 1912, 2054, 2422, 2752, 2814
FalI	AAGNNNNNCTT	8 cut(s)	931, 963, 1280, 1312, 2199, 2231, 2775, 2807
FaqI	GGGAC	2 cut(s)	35, 131
FatI	CATG	9 cut(s)	501, 1129, 1459, 1742, 1908, 2050, 2418, 2748, 2810
FauI	CCCGC	2 cut(s)	295, 1208
FauNDI	CATATG	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	2261
FokI	GGATG	9 cut(s)	272, 869, 955, 1555, 1913, 2029, 2098, 2130, 2394
FriOI	GRGCYC	2 cut(s)	2206, 2547
GlaI	GCGC	2 cut(s)	1295, 1516
GsaI	CCCAGC	2 cut(s)	189, 2355
GsuI	CTGGAG	3 cut(s)	2114, 2258, 2318
HaeII	RGCGCY	1 cut(s)	1297
HaeIII	GGCC	6 cut(s)	221, 451, 1245, 1644, 2026, 2269
HapII	CCGG	5 cut(s)	206, 299, 447, 688, 1597
HgaI	GACGC	3 cut(s)	71, 133, 211
HhaI	GCGC	2 cut(s)	1296, 1517
Hin1I	GRCGYC	3 cut(s)	63, 125, 203
Hin1II	CATG	9 cut(s)	505, 1133, 1463, 1746, 1912, 2054, 2422, 2752, 2814
Hin6I	GCGC	2 cut(s)	1294, 1515
HinP1I	GCGC	2 cut(s)	1294, 1515
HincII	GTYRAC	2 cut(s)	436, 547
HindII	GTYRAC	2 cut(s)	436, 547
HindIII	AAGCTT	3 cut(s)	359, 633, 751
HpaII	CCGG	5 cut(s)	206, 299, 447, 688, 1597
HphI	GGTGA	5 cut(s)	349, 788, 1264, 1865, 2447
Hpy166II	GTNNAC	8 cut(s)	436, 547, 1061, 1612, 1748, 1927, 2005, 2262
Hpy8I	GTNNAC	8 cut(s)	436, 547, 1061, 1612, 1748, 1927, 2005, 2262
Hpy99I	CGWCG	2 cut(s)	65, 205
HpyCH4IV	ACGT	1 cut(s)	1959
HpyF3I	CTNAG	8 cut(s)	228, 423, 665, 723, 912, 1211, 2541, 2754
HpySE526I	ACGT	1 cut(s)	1959
Hsp92I	GRCGYC	3 cut(s)	63, 125, 203
Hsp92II	CATG	9 cut(s)	505, 1133, 1463, 1746, 1912, 2054, 2422, 2752, 2814
HspAI	GCGC	2 cut(s)	1294, 1515
Kpn2I	TCCGGA	1 cut(s)	687
KspI	CCGCGG	1 cut(s)	802
Kzo9I	GATC	8 cut(s)	417, 494, 1042, 1349, 1420, 1918, 2524, 2788
LmnI	GCTCC	9 cut(s)	49, 182, 209, 991, 1144, 1361, 1444, 2201, 2248
LweI	GCATC	9 cut(s)	31, 250, 471, 526, 1186, 1197, 1560, 1891, 2200
MabI	ACCWGGT	1 cut(s)	160
MaeII	ACGT	1 cut(s)	1959
MaeIII	GTNAC	4 cut(s)	166, 1190, 1882, 2187
MalI	GATC	8 cut(s)	419, 496, 1044, 1351, 1422, 1920, 2526, 2790
MboI	GATC	8 cut(s)	417, 494, 1042, 1349, 1420, 1918, 2524, 2788
MfeI	CAATTG	5 cut(s)	254, 831, 1089, 1374, 1722
MflI	RGATCY	5 cut(s)	1042, 1420, 1918, 2524, 2788
MhlI	GDGCHC	4 cut(s)	1750, 2206, 2431, 2547
MlsI	TGGCCA	2 cut(s)	1245, 2026
MluNI	TGGCCA	2 cut(s)	1245, 2026
MlyI	GAGTC	4 cut(s)	91, 163, 787, 1399
MmeI	TCCRAC	2 cut(s)	84, 1119
Mox20I	TGGCCA	2 cut(s)	1245, 2026
MroI	TCCGGA	1 cut(s)	687
MroXI	GAANNNNTTC	1 cut(s)	2790
MscI	TGGCCA	2 cut(s)	1245, 2026
MseI	TTAA	3 cut(s)	375, 1680, 1800
Msp20I	TGGCCA	2 cut(s)	1245, 2026
MspA1I	CMGCKG	2 cut(s)	801, 1512
MspCI	CTTAAG	1 cut(s)	1679
MspI	CCGG	5 cut(s)	206, 299, 447, 688, 1597
MspR9I	CCNGG	8 cut(s)	162, 207, 448, 509, 1432, 1658, 2132, 2646
MunI	CAATTG	5 cut(s)	254, 831, 1089, 1374, 1722
Mva1269I	GAATGC	2 cut(s)	465, 2509
MvaI	CCWGG	6 cut(s)	162, 509, 1432, 1658, 2132, 2646
MvnI	CGCG	1 cut(s)	801
NciI	CCSGG	2 cut(s)	207, 448
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	8 cut(s)	417, 494, 1042, 1349, 1420, 1918, 2524, 2788
NheI	GCTAGC	1 cut(s)	994
NlaIII	CATG	9 cut(s)	505, 1133, 1463, 1746, 1912, 2054, 2422, 2752, 2814
NlaIV	GGNNCC	6 cut(s)	119, 294, 445, 686, 1440, 2103
NmeAIII	GCCGAG	1 cut(s)	1543
NmuCI	GTSAC	4 cut(s)	166, 1190, 1882, 2187
NspI	RCATGY	2 cut(s)	1746, 2054
PagI	TCATGA	2 cut(s)	1129, 2418
PciI	ACATGT	2 cut(s)	1742, 2050
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PctI	GAATGC	2 cut(s)	465, 2509
PdmI	GAANNNNTTC	1 cut(s)	2790
PfeI	GAWTC	7 cut(s)	13, 56, 268, 1426, 1699, 2415, 2568
PflMI	CCANNNNNTGG	1 cut(s)	2535
PleI	GAGTC	4 cut(s)	91, 163, 787, 1399
PmaCI	CACGTG	1 cut(s)	1960
PmlI	CACGTG	1 cut(s)	1960
PpsI	GAGTC	4 cut(s)	91, 163, 787, 1399
Ppu21I	YACGTR	1 cut(s)	1960
PpuMI	RGGWCCY	1 cut(s)	2102
PscI	ACATGT	2 cut(s)	1742, 2050
PsiI	TTATAA	1 cut(s)	2057
Psp124BI	GAGCTC	1 cut(s)	2206
Psp5II	RGGWCCY	1 cut(s)	2102
Psp6I	CCWGG	6 cut(s)	160, 507, 1430, 1656, 2130, 2644
PspCI	CACGTG	1 cut(s)	1960
PspFI	CCCAGC	2 cut(s)	185, 2351
PspGI	CCWGG	6 cut(s)	160, 507, 1430, 1656, 2130, 2644
PspN4I	GGNNCC	6 cut(s)	119, 294, 445, 686, 1440, 2103
PspPI	GGNCC	7 cut(s)	118, 292, 449, 505, 685, 1643, 2102
PspPPI	RGGWCCY	1 cut(s)	2102
PstI	CTGCAG	1 cut(s)	1942
PstNI	CAGNNNCTG	2 cut(s)	1946, 2137
PsuI	RGATCY	5 cut(s)	1042, 1420, 1918, 2524, 2788
RsaI	GTAC	8 cut(s)	787, 1262, 1334, 1625, 1711, 1784, 1847, 2171
RsaNI	GTAC	8 cut(s)	786, 1261, 1333, 1624, 1710, 1783, 1846, 2170
SacI	GAGCTC	1 cut(s)	2206
SacII	CCGCGG	1 cut(s)	802
SaqAI	TTAA	3 cut(s)	375, 1680, 1800
Sau3AI	GATC	8 cut(s)	417, 494, 1042, 1349, 1420, 1918, 2524, 2788
Sau96I	GGNCC	7 cut(s)	118, 292, 449, 505, 685, 1643, 2102
SchI	GAGTC	4 cut(s)	91, 163, 787, 1399
ScrFI	CCNGG	8 cut(s)	162, 207, 448, 509, 1432, 1658, 2132, 2646
SduI	GDGCHC	4 cut(s)	1750, 2206, 2431, 2547
SexAI	ACCWGGT	1 cut(s)	160
SfaNI	GCATC	9 cut(s)	31, 250, 471, 526, 1186, 1197, 1560, 1891, 2200
SfcI	CTRYAG	4 cut(s)	600, 964, 1716, 1938
Sfr303I	CCGCGG	1 cut(s)	802
SgrBI	CCGCGG	1 cut(s)	802
SinI	GGWCC	5 cut(s)	118, 292, 505, 685, 2102
SmlI	CTYRAG	5 cut(s)	368, 1565, 1679, 1895, 2205
SmoI	CTYRAG	5 cut(s)	368, 1565, 1679, 1895, 2205
SpeI	ACTAGT	1 cut(s)	973
SspI	AATATT	1 cut(s)	2283
SstI	GAGCTC	1 cut(s)	2206
StyD4I	CCNGG	8 cut(s)	160, 205, 446, 507, 1430, 1656, 2130, 2644
StyI	CCWWGG	2 cut(s)	129, 2593
TaiI	ACGT	1 cut(s)	1962
TaqI	TCGA	1 cut(s)	1557
TatI	WGTACW	1 cut(s)	1845
TauI	GCSGC	6 cut(s)	137, 140, 143, 149, 152, 391
TfiI	GAWTC	7 cut(s)	13, 56, 268, 1426, 1699, 2415, 2568
Tru1I	TTAA	3 cut(s)	375, 1680, 1800
Tru9I	TTAA	3 cut(s)	375, 1680, 1800
TscAI	CASTG	6 cut(s)	427, 589, 1063, 1195, 1887, 2353
TseFI	GTSAC	4 cut(s)	166, 1190, 1882, 2187
Tsp45I	GTSAC	4 cut(s)	166, 1190, 1882, 2187
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	6 cut(s)	427, 589, 1063, 1195, 1887, 2353
Van91I	CCANNNNNTGG	1 cut(s)	2535
Vha464I	CTTAAG	1 cut(s)	1679
VneI	GTGCAC	1 cut(s)	1746
VpaK11BI	GGWCC	5 cut(s)	118, 292, 505, 685, 2102
XapI	RAATTY	4 cut(s)	238, 1108, 1234, 2637
XbaI	TCTAGA	1 cut(s)	2377
XceI	RCATGY	2 cut(s)	1746, 2054
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1536
XmiI	GTMKAC	1 cut(s)	2261
XmnI	GAANNNNTTC	1 cut(s)	2790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.