MD17G1162000.v1.1

Splicing factor 3B subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
15980201 .. 15984120
3920 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1162000.v1.1.491

Sequence Viewer

Length: 3801 bp
ATGGCGTCCGACGACGAGATAGAGAAGACGCAGGAAGAGAGGAAGAGGATGGAGAAGCAATTGGCCTCCCTCACCTCCGTCACCTTCGACACAGACCTCTACGGCGGCACCGACAAGGGCGCATACGTCTCGTCCATCCCTGTGAACGACGACGATGACAACGCGGAGGCCATGGACAATGAAATTGCTCGGAGGATGGCGGCGTCGTACACGGCCCCCAAGTCGGTGCTGAACGAGAGGCCGAGAGGCGGCGACGCCGATGAGGATTTGGGGTTCAAGAAGCCGCAGAGGATTATCGATAGGGAGGATGATTATCGACAGCGGAGGTTGAACCGTATCATATCGCCTGAGCGGCACGACCCGTTTGCGTCCGGGGAGAAGACTCCGGACCCGTCGGTGAGGACTTATGCCGATGTGATGAGGGAGGAAGCCCTGAAGAGGGAGAAGGATGAGACTCTGAAGCTTATTGCTAAGAAGATGAAGGAGAAAGAGGAGGCGCCGCCGGAAAAGGAGGATAAGCCTGCTGCTGCTGAGGCGGTGCCCCAAAAGAGGAGGAATCGGTGGGACCAGTCTCAGGATGGTGATGGTGGGGGCAAGAAGGCAAAAACGTCGGATTGGGACTTACCGGATACGACGCCAGGAAAGTGGGACGCAACTCCGACGCCAGGGAGGGTTTCGGATTCGACTCCATCACTGGGGAGGAGGAACCGCTGGGATGAGACACCCACTCCGGGGCGGGTGGCAGATTCGGATGCTACTCCAGCTGGTGCTGTCACTCCCGGTGCCACCCCTGCTGGGATGGCTTGGGATGCGACTCCGAAGCTTCCTGGGATGGCCACACCGACACCGAAACGGCAGAGGTCAAGGTGGGATGAGACCCCTGCCTCAATGGGCAGTGCGACCCCAATGGCTGGGGCAACCCCTGCTGCTGCCTATACACCTGGTGTGACCCCTGTAGGTGGAGTTGAACTTGCCACCCCAACCCCCGGGGCTATTAATGTGAGGGGAGCCATTACGCCAGAGCAGTATAATCTATTGAGGTGGGAGAAGGATATTGAAGAGAGGAATAGACCATTGACTGATGAAGAGCTGGATGCTATGTTTCCTCAAGAAGGGTATAAAGTTTTGGACCCACCGTCTTCTTATGTGCCGATTAGGACTCCGGCGAGGAAGCTTCTGGCTACCCCGACTCCAATGGGGACTCCTATGTATTCTATTCCGGAAGAGAATCGTGGGCAGCAGTTTGATGTGCCTAAGGAGTTGCCTGGTGGGTTACCATTTATGAAGCCCGAGGACTATCAGTACTTTGGGGCGTTGCTGAATGAAGATGAGGAGGAGGAATTGTCACCTGATGAGCAGAAAGAGCGGAAGATTATGAAGCTTTTGCTTAAAGTTAAGAATGGAACACCACAGCAGAGAAAGACAGCGTTGAGGCAGCTTACGGATAAGGCTCGTGAGTTTGGTGCTGGCCCCTTGTTTAACCGCATTTTGCCTCTGCTTATGCAACCCACTTTGGAAGACCAAGAGAGGCATCTTTTGGTTAAGGTAATTGATCGAGTGCTTTATAAATTGGATGAGTTGGTACGTCCTTATGTGCATAAAATTCTTGTTGTTATTGAACCTTTGTTGATTGATGAAGACTATTATGCACGTGTTGAAGGGAGAGAAATTATCTCCAATCTTAGTAAAGCAGCTGGTTTGGCTACTATGATTGCAGCCATGCGTCCGGATATTGATAACATTGATGAATATGTTAGGAACACTACTGCCAGAGCTTTTAGTGTTGTTGCTTCTGCACTTGGTATACCTGCACTGTTGCCATTTTTGAAAGCCGTGTGTCAGAGCAAGAAGTCTTGGCAAGCACGGCACACTGGAATCAAGATTGTTCAGCAGATTGCCATTTTGATCGGGTGTGCTGTACTTCCCCACTTGAGGTCTCTTGTGGAAATTATTGAGAATGGTCTGAGTGATGAAAATCAGAAGGTTCGTACAATTACTGCTTTATCTCTTGCTGCTCTCGCTGAGGCTGCTGCCCCATATGGTATTGAGAGCTTTGACTCTGTGTTGAAGCCATTGTGGAAGGGTATTAGGTCTCACCGTGGAAAGGTTTTGGCTGCCTTCTTGAAGGCAATTGGTTTTATTATTCCCCTTATGGATGCAATGTATGCCAGTTACTATACAAAGGAAGTGATGGTTGTTTTGATTAGAGAGTTCCAGTCTCCCGATGAAGAGATGAAGAAAATTGTGCTCAAAGTTGTCAAACAGTGTGTGAGTACAGAAGGTGTAGAGCCTGAGTATATAAGAAGTGATATTCTTCCTGAGTTCTTCAAAAACTTCTGGGTTAGAAGGATGGCTTTGGATAGGAGAAACTACAGGCAATTGGTGGAAACAACCGTGGAGATAGCAAACAAAGTGGGTGTTGCTGATATAGTTGGGAGAATTGTTGAGGATCTCAAAGATGAGAGTGAACCTTATAGGAGAATGGTTATGGAGACAATCGAGAAGGTGGTTGTGAACTTGGGTGCATCTGACATTGATGCTCGGTTGGAGGAGCTTCTCATTGATGGTATCCTTTATGCTTTCCAAGAGCAGACGAGTGATGATGCAAATGTGATGCTTAATGGATTCGGTGCGGTTGTGAATTCTCTTGGTCTAAGGGTAAAACCTTACCTTCCTCAGATTTGTGGTACCATTAAGTGGCGTTTGAATAACAAGAGTGCAAAGGTCAGACAGCAAGCTGCAGATCTTATTTCTAGAATTGCTGTTGTTATGAAGCAGTGCCAAGAGGAGCAACTGATGGGTCATCTTGGTGTTGTCTTGTATGAGTATTTGGGAGAAGAGTATCCAGAAGTTTTGGGATCAATTCTGGGAGCGCTGAAGGCAATTGTGAATGTTATTGGTATGACAAAGATGACCCCTCCTATAAAGGATTTGCTTCCCAGGTTGACACCAATTTTGAAGAATAGGCATGAGAAAGTCCAGGAGAACTGTATTGACCTTGTCGGTCGTATTGCTGATCGCGGTGCTGAGTTTGTTCCCGCAAGGGAGTGGATGAGGATCTGTTTTGAGCTTCTTGAGATGCTCAAGGCTCATAAGAAGGGTATCCGGCGAGCTACAGTGAATACTTTTGGGTACATTGCCAAAGCCATTGGTCCACAAGATGTCCTCGCAACTCTATTGAACAATCTCAAAGTGCAGGAGCGTCAGAACCGTGTTTGCACCACTGTGGCAATCGCAATAGTAGCTGAAACCTGTTCGCCTTTCACAGTTCTTCCGGCCCTGATGAATGAGTATCGTGTTCCAGAGCTTAATGTGCAGAATGGTGTTTTGAAATCCCTTTCGTTCTTGTTTGAGTACATCGGTGAAATGGGAAAGGACTATATCTATGCAGTGACCCCGCTGCTAGAGGATGCCCTCATGGATAGAGATCTGGTTCACAGGCAAACTGCTGCTTCTGCTGTCAAGCACATGGCTCTGGGAGTAGCGGGATTGGGATGCGAGGATGCTTTGGTCCACTTGCTGAACTACGTCTGGCCAAACATATTTGAGACATCCCCGCACGTTATCAACGCGGTCATGGAAGCGATTGAAGGGATGAGAGTGGCGTTAGGTGCTGCGGTTGTGCTCAACTACTGTCTCCAGGGGCTGTTCCATCCTGCTAGGAAGGTTAGAGAGGTGTACTGGAAGATTTACAACTCACTGTATATCGGAGCTCAAGATGCTCTTGTTGCATCGTACCCGATGCTCGAGGATGAGGAACATAACGTATATACCCGGCCCGAGCTAATGATGTTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1267

Amino Acids

141.57

Weight (kDa)

5.66

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SF3b1 PF08920 281 - 411 2.5e-47 Splicing factor 3B subunit 1
TOR1L1_N PF24714 872 - 1048 4.5e-08 TORTIFOLIA1 N-terminal
PPP2R1A-like_HEAT PF22646 1048 - 1120 4.4e-21 PPP2R1A-like HEAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1566
Acc36I ACCTGC 1 cut(s) 1816
Acc65I GGTACC 1 cut(s) 2687
AccB1I GGYRCC 5 cut(s) 107, 496, 538, 782, 2687
AccB7I CCANNNNNTGG 2 cut(s) 911, 2697
AccBSI CCGCTC 2 cut(s) 352, 1366
AccI GTMKAC 1 cut(s) 1804
AccII CGCG 3 cut(s) 164, 3021, 3572
AccIII TCCGGA 3 cut(s) 385, 1219, 1726
AclWI GGATC 3 cut(s) 2457, 2866, 3065
AcoI YGGCCR 2 cut(s) 834, 3533
AcsI RAATTY 2 cut(s) 1602, 2641
AcuI CTGAAG 3 cut(s) 455, 479, 2897
AcvI CACGTG 1 cut(s) 1652
AcyI GRCGYC 6 cut(s) 5, 203, 255, 497, 635, 662
AdeI CACNNNGTG 1 cut(s) 944
AfeI AGCGCT 1 cut(s) 2874
AflIII ACRYGT 1 cut(s) 1651
AhdI GACNNNNNGTC 1 cut(s) 1135
AjnI CCWGG 8 cut(s) 637, 664, 826, 940, 1264, 2939, 2979, 3639
AleI CACNNNNGTG 1 cut(s) 3224
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
Alw21I GWGCWC 3 cut(s) 2250, 3627, 3715
AlwI GGATC 3 cut(s) 2457, 2866, 3065
AlwNI CAGNNNCTG 1 cut(s) 3646
Ama87I CYCGRG 4 cut(s) 986, 1289, 3746, 3779
Aor13HI TCCGGA 3 cut(s) 385, 1219, 1726
Aor51HI AGCGCT 1 cut(s) 2874
AoxI GGCC 9 cut(s) 63, 168, 213, 239, 834, 1468, 3276, 3533, 3776
ApoI RAATTY 2 cut(s) 1602, 2641
ArsI GACNNNNNNTTYG 2 cut(s) 2938, 2970
AseI ATTAAT 1 cut(s) 996
Asp718I GGTACC 1 cut(s) 2687
AspLEI GCGC 3 cut(s) 122, 499, 2875
AspS9I GGNCC 9 cut(s) 214, 388, 565, 1129, 1469, 3152, 3277, 3511, 3777
AsuC2I CCSGG 6 cut(s) 373, 732, 780, 987, 988, 3775
AsuHPI GGTGA 7 cut(s) 64, 73, 409, 593, 1338, 2087, 3374
AvaI CYCGRG 4 cut(s) 986, 1289, 3746, 3779
AvaII GGWCC 5 cut(s) 388, 565, 1129, 3152, 3511
AxyI CCTNAGG 1 cut(s) 1254
BaeGI GKGCMC 1 cut(s) 543
BalI TGGCCA 2 cut(s) 836, 3535
BanI GGYRCC 5 cut(s) 107, 496, 538, 782, 2687
BanII GRGCYC 1 cut(s) 3715
BauI CACGAG 1 cut(s) 1452
BbrPI CACGTG 1 cut(s) 1652
BbsI GAAGAC 5 cut(s) 32, 386, 1131, 1524, 1644
Bbv12I GWGCWC 3 cut(s) 2250, 3627, 3715
BbvCI CCTCAGC 2 cut(s) 531, 2022
BceAI ACGGC 5 cut(s) 118, 228, 869, 1817, 1880
BcgI CGANNNNNNTGC 6 cut(s) 111, 145, 347, 381, 591, 625
BciT130I CCWGG 8 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641
BciVI GTATCC 4 cut(s) 622, 2579, 2853, 3113
BcnI CCSGG 6 cut(s) 373, 732, 780, 987, 988, 3775
BfaI CTAG 3 cut(s) 2754, 3404, 3660
BfmI CTRYAG 4 cut(s) 954, 2371, 2739, 3114
BfoI RGCGCY 2 cut(s) 500, 2876
BfuAI ACCTGC 1 cut(s) 1816
BfuI GTATCC 4 cut(s) 622, 2579, 2853, 3113
BglI GCCNNNNNGGC 1 cut(s) 352
BglII AGATCT 2 cut(s) 2743, 3427
BmcAI AGTACT 1 cut(s) 1304
Bme18I GGWCC 5 cut(s) 388, 565, 1129, 3152, 3511
BmeRI GACNNNNNGTC 1 cut(s) 1135
BmeT110I CYCGRG 4 cut(s) 986, 1289, 3746, 3779
BmgT120I GGNCC 9 cut(s) 214, 388, 565, 1129, 1469, 3152, 3277, 3511, 3777
BmrI ACTGGG 1 cut(s) 704
BmuI ACTGGG 1 cut(s) 704
BpiI GAAGAC 5 cut(s) 32, 386, 1131, 1524, 1644
BpmI CTGGAG 2 cut(s) 744, 3623
Bpu10I CCTNAGC 3 cut(s) 348, 531, 2022
BpuEI CTTGAG 5 cut(s) 1092, 1951, 3068, 3095, 3699
BpuMI CCSGG 6 cut(s) 373, 732, 780, 987, 988, 3775
Bsa29I ATCGAT 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 1652
BsaBI GATNNNNATC 4 cut(s) 312, 1974, 3056, 3426
BsaHI GRCGYC 6 cut(s) 5, 203, 255, 497, 635, 662
BsaI GGTCTC 3 cut(s) 869, 1941, 2097
BsaWI WCCGGW 4 cut(s) 385, 625, 1219, 1726
BsaXI ACNNNNNCTCC 6 cut(s) 712, 742, 1174, 1204, 1328, 1358
Bse1I ACTGG 6 cut(s) 568, 699, 1876, 2169, 2215, 3686
Bse21I CCTNAGG 1 cut(s) 1254
Bse3DI GCAATG 2 cut(s) 2166, 3135
Bse8I GATNNNNATC 4 cut(s) 312, 1974, 3056, 3426
BseAI TCCGGA 3 cut(s) 385, 1219, 1726
BseBI CCWGG 8 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641
BseCI ATCGAT 1 cut(s) 297
BseJI GATNNNNATC 4 cut(s) 312, 1974, 3056, 3426
BseMI GCAATG 2 cut(s) 2166, 3135
BseMII CTCAG 9 cut(s) 339, 522, 587, 1955, 2013, 2283, 2310, 2690, 3018
BseNI ACTGG 6 cut(s) 568, 699, 1876, 2169, 2215, 3686
BseRI GAGGAG 7 cut(s) 506, 565, 715, 1346, 1349, 2564, 2801
BseSI GKGCMC 1 cut(s) 543
BseYI CCCAGC 3 cut(s) 711, 794, 911
BsgI GTGCAG 4 cut(s) 1779, 1794, 3215, 3335
Bsh1236I CGCG 3 cut(s) 164, 3021, 3572
Bsh1285I CGRYCG 1 cut(s) 3007
BshFI GGCC 9 cut(s) 65, 170, 215, 241, 836, 1470, 3278, 3535, 3778
BshNI GGYRCC 5 cut(s) 107, 496, 538, 782, 2687
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 3007
BsiHKAI GWGCWC 3 cut(s) 2250, 3627, 3715
BsiHKCI CYCGRG 4 cut(s) 986, 1289, 3746, 3779
BslFI GGGAC 4 cut(s) 578, 632, 662, 1213
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 4 cut(s) 578, 632, 662, 1213
BsnI GGCC 9 cut(s) 65, 170, 215, 241, 836, 1470, 3278, 3535, 3778
Bso31I GGTCTC 3 cut(s) 869, 1941, 2097
BsoBI CYCGRG 4 cut(s) 986, 1289, 3746, 3779
Bsp1286I GDGCHC 4 cut(s) 543, 2250, 3627, 3715
Bsp13I TCCGGA 3 cut(s) 385, 1219, 1726
Bsp143I GATC 8 cut(s) 1552, 1905, 2449, 2743, 2858, 3016, 3057, 3427
Bsp19I CCATGG 1 cut(s) 171
BspANI GGCC 9 cut(s) 65, 170, 215, 241, 836, 1470, 3278, 3535, 3778
BspCNI CTCAG 9 cut(s) 340, 523, 586, 1956, 2014, 2284, 2311, 2689, 3019
BspDI ATCGAT 1 cut(s) 297
BspEI TCCGGA 3 cut(s) 385, 1219, 1726
BspFNI CGCG 3 cut(s) 164, 3021, 3572
BspMAI CTGCAG 1 cut(s) 2743
BspMI ACCTGC 1 cut(s) 1816
BspPI GGATC 3 cut(s) 2457, 2866, 3065
BspQI GCTCTTC 1 cut(s) 1080
BspT107I GGYRCC 5 cut(s) 107, 496, 538, 782, 2687
BspTNI GGTCTC 3 cut(s) 869, 1941, 2097
BsrBI CCGCTC 2 cut(s) 352, 1366
BsrDI GCAATG 2 cut(s) 2166, 3135
BsrI ACTGG 6 cut(s) 568, 699, 1876, 2169, 2215, 3686
BssMI GATC 8 cut(s) 1552, 1905, 2449, 2743, 2858, 3016, 3057, 3427
BssNAI GTATAC 1 cut(s) 1805
BssNI GRCGYC 6 cut(s) 5, 203, 255, 497, 635, 662
BssSI CACGAG 1 cut(s) 1452
BssT1I CCWWGG 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 1805
Bst2BI CACGAG 1 cut(s) 1452
Bst2UI CCWGG 8 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641
Bst6I CTCTTC 8 cut(s) 30, 38, 431, 1053, 1080, 1218, 2223, 2832
BstACI GRCGYC 6 cut(s) 5, 203, 255, 497, 635, 662
BstAPI GCANNNNNTGC 2 cut(s) 923, 2165
BstBAI YACGTR 1 cut(s) 1652
BstC8I GCNNGC 5 cut(s) 522, 1468, 1860, 2736, 3111
BstDSI CCRYGG 3 cut(s) 171, 2098, 2394
BstEII GGTNACC 1 cut(s) 1272
BstENI CCTNNNNNAGG 1 cut(s) 1110
BstFNI CGCG 3 cut(s) 164, 3021, 3572
BstH2I RGCGCY 2 cut(s) 500, 2876
BstHHI GCGC 3 cut(s) 122, 499, 2875
BstKTI GATC 8 cut(s) 1555, 1908, 2452, 2746, 2861, 3019, 3060, 3430
BstMBI GATC 8 cut(s) 1552, 1905, 2449, 2743, 2858, 3016, 3057, 3427
BstMCI CGRYCG 1 cut(s) 3007
BstNI CCWGG 8 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641
BstPI GGTNACC 1 cut(s) 1272
BstSFI CTRYAG 4 cut(s) 954, 2371, 2739, 3114
BstSLI GKGCMC 1 cut(s) 543
BstUI CGCG 3 cut(s) 164, 3021, 3572
BstV2I GAAGAC 5 cut(s) 32, 386, 1131, 1524, 1644
BstX2I RGATCY 4 cut(s) 2449, 2743, 3057, 3427
BstXI CCANNNNNNTGG 1 cut(s) 645
BstYI RGATCY 4 cut(s) 2449, 2743, 3057, 3427
BstZ17I GTATAC 1 cut(s) 1805
Bsu15I ATCGAT 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 1254
BsuI GTATCC 4 cut(s) 622, 2579, 2853, 3113
BsuRI GGCC 9 cut(s) 65, 170, 215, 241, 836, 1470, 3278, 3535, 3778
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 3 cut(s) 171, 2098, 2394
BtsI GCAGTG 3 cut(s) 901, 2783, 3396
BveI ACCTGC 1 cut(s) 1816
Cac8I GCNNGC 5 cut(s) 522, 1468, 1860, 2736, 3111
CaiI CAGNNNCTG 1 cut(s) 3646
CfoI GCGC 3 cut(s) 122, 499, 2875
Cfr13I GGNCC 9 cut(s) 214, 388, 565, 1129, 1469, 3152, 3277, 3511, 3777
Cfr9I CCCGGG 1 cut(s) 986
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 9 cut(s) 37, 192, 263, 357, 643, 659, 670, 1712, 3191
CsiI ACCWGGT 1 cut(s) 940
CspCI CAANNNNNGTGG 2 cut(s) 2394, 2429
CviAII CATG 6 cut(s) 172, 1720, 2969, 3418, 3469, 3577
DinI GGCGCC 1 cut(s) 498
DpnI GATC 8 cut(s) 1554, 1907, 2451, 2745, 2860, 3018, 3059, 3429
DpnII GATC 8 cut(s) 1552, 1905, 2449, 2743, 2858, 3016, 3057, 3427
DraIII CACNNNGTG 1 cut(s) 944
DriI GACNNNNNGTC 1 cut(s) 1135
EaeI YGGCCR 2 cut(s) 834, 3533
Eam1104I CTCTTC 8 cut(s) 30, 38, 431, 1053, 1080, 1218, 2223, 2832
Eam1105I GACNNNNNGTC 1 cut(s) 1135
EarI CTCTTC 8 cut(s) 30, 38, 431, 1053, 1080, 1218, 2223, 2832
Ecl136II GAGCTC 1 cut(s) 3713
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 3715
Eco31I GGTCTC 3 cut(s) 869, 1941, 2097
Eco47I GGWCC 5 cut(s) 388, 565, 1129, 3152, 3511
Eco47III AGCGCT 1 cut(s) 2874
Eco53kI GAGCTC 1 cut(s) 3713
Eco57I CTGAAG 3 cut(s) 455, 479, 2897
Eco72I CACGTG 1 cut(s) 1652
Eco81I CCTNAGG 1 cut(s) 1254
Eco88I CYCGRG 4 cut(s) 986, 1289, 3746, 3779
Eco91I GGTNACC 1 cut(s) 1272
EcoICRI GAGCTC 1 cut(s) 3713
EcoNI CCTNNNNNAGG 1 cut(s) 1110
EcoO65I GGTNACC 1 cut(s) 1272
EcoRI GAATTC 1 cut(s) 2641
EcoRII CCWGG 8 cut(s) 637, 664, 826, 940, 1264, 2939, 2979, 3639
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 3715
EgeI GGCGCC 1 cut(s) 498
EheI GGCGCC 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 6 cut(s) 175, 1723, 2972, 3421, 3472, 3580
FalI AAGNNNNNCTT 4 cut(s) 2338, 2370, 3708, 3740
FaqI GGGAC 4 cut(s) 578, 632, 662, 1213
FatI CATG 6 cut(s) 171, 1719, 2968, 3417, 3468, 3576
FauI CCCGC 5 cut(s) 729, 3046, 3405, 3478, 3564
FauNDI CATATG 1 cut(s) 2038
FblI GTMKAC 1 cut(s) 1804
FriOI GRGCYC 1 cut(s) 3715
FspBI CTAG 3 cut(s) 2754, 3404, 3660
GlaI GCGC 3 cut(s) 121, 498, 2874
GsaI CCCAGC 3 cut(s) 715, 798, 915
GsuI CTGGAG 2 cut(s) 744, 3623
HaeII RGCGCY 2 cut(s) 500, 2876
HaeIII GGCC 9 cut(s) 65, 170, 215, 241, 836, 1470, 3278, 3535, 3778
HgaI GACGC 9 cut(s) 37, 192, 263, 357, 643, 659, 670, 1712, 3191
HhaI GCGC 3 cut(s) 122, 499, 2875
Hin1I GRCGYC 6 cut(s) 5, 203, 255, 497, 635, 662
Hin1II CATG 6 cut(s) 175, 1723, 2972, 3421, 3472, 3580
Hin6I GCGC 3 cut(s) 120, 497, 2873
HinP1I GCGC 3 cut(s) 120, 497, 2873
HincII GTYRAC 1 cut(s) 2946
HindII GTYRAC 1 cut(s) 2946
HindIII AAGCTT 4 cut(s) 461, 821, 1172, 1379
HphI GGTGA 7 cut(s) 64, 73, 409, 593, 1338, 2087, 3374
HpyCH4IV ACGT 7 cut(s) 126, 608, 1585, 1651, 3528, 3561, 3765
HpySE526I ACGT 7 cut(s) 126, 608, 1585, 1651, 3528, 3561, 3765
Hsp92I GRCGYC 6 cut(s) 5, 203, 255, 497, 635, 662
Hsp92II CATG 6 cut(s) 175, 1723, 2972, 3421, 3472, 3580
HspAI GCGC 3 cut(s) 120, 497, 2873
KasI GGCGCC 1 cut(s) 496
Kpn2I TCCGGA 3 cut(s) 385, 1219, 1726
KpnI GGTACC 1 cut(s) 2691
Kzo9I GATC 8 cut(s) 1552, 1905, 2449, 2743, 2858, 3016, 3057, 3427
LguI GCTCTTC 1 cut(s) 1080
LmnI GCTCC 6 cut(s) 1007, 2551, 2788, 2870, 3199, 3710
MabI ACCWGGT 1 cut(s) 940
MaeI CTAG 3 cut(s) 2754, 3404, 3660
MaeII ACGT 7 cut(s) 126, 608, 1585, 1651, 3528, 3561, 3765
MaeIII GTNAC 7 cut(s) 79, 772, 946, 1272, 1344, 2171, 3391
MalI GATC 8 cut(s) 1554, 1907, 2451, 2745, 2860, 3018, 3059, 3429
MbiI CCGCTC 2 cut(s) 352, 1366
MboI GATC 8 cut(s) 1552, 1905, 2449, 2743, 2858, 3016, 3057, 3427
MfeI CAATTG 4 cut(s) 59, 2130, 2378, 2883
MflI RGATCY 4 cut(s) 2449, 2743, 3057, 3427
MhlI GDGCHC 4 cut(s) 543, 2250, 3627, 3715
MlsI TGGCCA 2 cut(s) 836, 3535
MluNI TGGCCA 2 cut(s) 836, 3535
Mly113I GGCGCC 1 cut(s) 497
MlyI GAGTC 8 cut(s) 376, 448, 679, 808, 1153, 1183, 1195, 2051
MmeI TCCRAC 4 cut(s) 33, 591, 683, 2526
Mox20I TGGCCA 2 cut(s) 836, 3535
MroI TCCGGA 3 cut(s) 385, 1219, 1726
MscI TGGCCA 2 cut(s) 836, 3535
MseI TTAA 8 cut(s) 996, 1389, 1395, 1479, 1542, 2619, 2694, 3309
MslI CAYNNNNRTG 3 cut(s) 140, 2808, 3224
Msp20I TGGCCA 2 cut(s) 836, 3535
MspA1I CMGCKG 5 cut(s) 322, 711, 764, 1694, 3400
MunI CAATTG 4 cut(s) 59, 2130, 2378, 2883
MvaI CCWGG 8 cut(s) 639, 666, 828, 942, 1266, 2941, 2981, 3641
MvnI CGCG 3 cut(s) 164, 3021, 3572
NarI GGCGCC 1 cut(s) 497
NciI CCSGG 6 cut(s) 373, 732, 780, 987, 988, 3775
NcoI CCATGG 1 cut(s) 171
NdeI CATATG 1 cut(s) 2038
NdeII GATC 8 cut(s) 1552, 1905, 2449, 2743, 2858, 3016, 3057, 3427
NlaIII CATG 6 cut(s) 175, 1723, 2972, 3421, 3472, 3580
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 5 cut(s) 79, 772, 946, 1344, 3391
OliI CACNNNNGTG 1 cut(s) 3224
PaeR7I CTCGAG 1 cut(s) 3746
PciSI GCTCTTC 1 cut(s) 1080
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 6 cut(s) 556, 680, 746, 1228, 1875, 2625
PflFI GACNNNGTC 1 cut(s) 2999
PflMI CCANNNNNTGG 2 cut(s) 911, 2697
PfoI TCCNGGA 1 cut(s) 2979
PleI GAGTC 8 cut(s) 376, 448, 679, 808, 1153, 1183, 1195, 2051
PluTI GGCGCC 1 cut(s) 500
PmaCI CACGTG 1 cut(s) 1652
PmlI CACGTG 1 cut(s) 1652
PpsI GAGTC 8 cut(s) 376, 448, 679, 808, 1153, 1183, 1195, 2051
Ppu21I YACGTR 1 cut(s) 1652
PshBI ATTAAT 1 cut(s) 996
PsiI TTATAA 1 cut(s) 1566
Psp124BI GAGCTC 1 cut(s) 3715
Psp6I CCWGG 8 cut(s) 637, 664, 826, 940, 1264, 2939, 2979, 3639
PspCI CACGTG 1 cut(s) 1652
PspEI GGTNACC 1 cut(s) 1272
PspFI CCCAGC 3 cut(s) 711, 794, 911
PspGI CCWGG 8 cut(s) 637, 664, 826, 940, 1264, 2939, 2979, 3639
PspPI GGNCC 9 cut(s) 214, 388, 565, 1129, 1469, 3152, 3277, 3511, 3777
PspXI VCTCGAGB 1 cut(s) 3746
PstI CTGCAG 1 cut(s) 2743
PstNI CAGNNNCTG 1 cut(s) 3646
PsuI RGATCY 4 cut(s) 2449, 2743, 3057, 3427
PsyI GACNNNGTC 1 cut(s) 2999
PvuII CAGCTG 2 cut(s) 764, 1694
RseI CAYNNNNRTG 3 cut(s) 140, 2808, 3224
SacI GAGCTC 1 cut(s) 3715
SapI GCTCTTC 1 cut(s) 1080
SaqAI TTAA 8 cut(s) 996, 1389, 1395, 1479, 1542, 2619, 2694, 3309
Sau3AI GATC 8 cut(s) 1552, 1905, 2449, 2743, 2858, 3016, 3057, 3427
Sau96I GGNCC 9 cut(s) 214, 388, 565, 1129, 1469, 3152, 3277, 3511, 3777
ScaI AGTACT 1 cut(s) 1304
SchI GAGTC 8 cut(s) 376, 448, 679, 808, 1153, 1183, 1195, 2051
SduI GDGCHC 4 cut(s) 543, 2250, 3627, 3715
SexAI ACCWGGT 1 cut(s) 940
SfcI CTRYAG 4 cut(s) 954, 2371, 2739, 3114
SfoI GGCGCC 1 cut(s) 498
Sfr274I CTCGAG 1 cut(s) 3746
SinI GGWCC 5 cut(s) 388, 565, 1129, 3152, 3511
SlaI CTCGAG 1 cut(s) 3746
SmaI CCCGGG 1 cut(s) 988
SmiMI CAYNNNNRTG 3 cut(s) 140, 2808, 3224
SmlI CTYRAG 6 cut(s) 1107, 1930, 3074, 3083, 3714, 3746
SmoI CTYRAG 6 cut(s) 1107, 1930, 3074, 3083, 3714, 3746
SspDI GGCGCC 1 cut(s) 496
SspMI CTAG 3 cut(s) 2754, 3404, 3660
SstI GAGCTC 1 cut(s) 3715
StyI CCWWGG 1 cut(s) 171
TaiI ACGT 7 cut(s) 129, 611, 1588, 1654, 3531, 3564, 3768
TaqI TCGA 7 cut(s) 87, 297, 316, 683, 1555, 2499, 3747
TaqII GACCGA 1 cut(s) 2993
TatI WGTACW 5 cut(s) 1302, 1918, 2273, 3354, 3678
TauI GCSGC 6 cut(s) 108, 203, 252, 286, 355, 502
TfiI GAWTC 6 cut(s) 556, 680, 746, 1228, 1875, 2625
Tru1I TTAA 8 cut(s) 996, 1389, 1395, 1479, 1542, 2619, 2694, 3309
Tru9I TTAA 8 cut(s) 996, 1389, 1395, 1479, 1542, 2619, 2694, 3309
TseFI GTSAC 5 cut(s) 79, 772, 946, 1344, 3391
Tsp45I GTSAC 5 cut(s) 79, 772, 946, 1344, 3391
TspGWI ACGGA 2 cut(s) 67, 1457
TspMI CCCGGG 1 cut(s) 986
Tth111I GACNNNGTC 1 cut(s) 2999
Van91I CCANNNNNTGG 2 cut(s) 911, 2697
VpaK11BI GGWCC 5 cut(s) 388, 565, 1129, 3152, 3511
VspI ATTAAT 1 cut(s) 996
XagI CCTNNNNNAGG 1 cut(s) 1110
XapI RAATTY 2 cut(s) 1602, 2641
XbaI TCTAGA 1 cut(s) 2753
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XhoI CTCGAG 1 cut(s) 3746
XmaI CCCGGG 1 cut(s) 986
XmiI GTMKAC 1 cut(s) 1804
XspI CTAG 3 cut(s) 2754, 3404, 3660
ZrmI AGTACT 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.