FvH4_3g24880

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017630
Physical Location & Seq
Reverse (-)
17956882 .. 17958144
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24880.t1

Sequence Viewer

Length: 1263 bp
ATGACGGGAAATCAGCTCCCAGAAGACATCATAGTCTCCGACATCCTAGTAAAGCTCCCCATCAAATCCTTAATCCGCTGCACTTGCGTCTCGAAACGATGGCGTTTCATAATCTCCGACCCCCAATTCGCCAACTCTCACTTCCAACAAGCTCGCCACCACAACGCCTTGACCCGCCGCCTGCTCCTCTACTCCTCCCCCTCCCAAGTCGAATCCGTTGACTTGGAAACGACGCCGTCTTCGTCTTCTCCGATCCGCAACCTCACCTGTAACCTGAACAAGCAACCCGAATCGATCAAGCTCCTCGGCTCCTGCAACGGTCTGGTATGTCTCTGTACGGATCCTACTTTGAGTACATGTGATGTTTTCATCTGGAACCCATCAACCGGCTTCTTTCGTAATCTACCGTACCCATGTTTCTCCTCGGCGACACACACTGTTCTGTACGGCGGTTTCGGATACTTGTCGGAGACCGACGACTATAAAGTCGTGGTGGCTGTGCACAATGTGTTTGACTATGGCGAAAATGTGGTGGAGGTGAAAGTGTTGTCATGGAGAACAGGTGTTTGGAGAAGTATTGAAGTGCATAGTTTGTTGTCTTACACATTGTATCCGGCCGCGGTTGTGGTTGGGGAGACATTACATTGGTTTCGAAACGATCGTTGGCTAGGTTCGGCGATTATTGCTTTTGATTTGGACAAGGAGGAGTTCAGGGAGATGAGGCCGCCGCCGAATTTGGGGCAGAGATATGATAGGGATTATGTGCATTGTGTGGCTTCCTTGGGAGGAAGGCTACATGTGTTTCGATATCCGGCTGGTGTTTGTGATGTTATGGAGTTGTGGGTGATGGAGGAATATGGTGATGGTGAGTCGTGGACAGAGGTGTTTAAGTTGAAATTTACTGATGAGCCTCGGAAGTCTGTGTATCTGCGGCCGTTTTTGGCTGTGGGAGGTAGTTCAGTTGTGGCGAAAGTGACTAGGAACTCGACGATGGAGATGGTGAGGATTGAACCTGAAGATGAGCAACCTGTCGTGGATATGTTGAAGAGGGGGGTTGAACCTGCAATGATTGTATATGAAGAGAGCCTACACCGGCTTCCTGGCTGTGGTGTAGAAGAAGTGAAGGTGGAAGAGATTTCAAACCCAAGGTTTAGTACTCTCTTCTGGGTCACTGATCACTGGTACGCTCTTCTGGCATTGGTCGGTTTTCTTATTTCTCTATACTGTAAATGGTGTACAAATGTTTTAGGATGTCAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

421

Amino Acids

47.8

Weight (kDa)

5.71

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 44 2e-07 F-box-like
F-box PF00646 5 - 43 2.6e-07 F-box domain
FBA_1 PF07734 72 - 340 3.7e-22 F-box associated beta propeller domain
FBA_3 PF08268 75 - 294 1.4e-15 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 94 - 237 6.2e-09 F-box protein At3g26010-like, beta-propeller
Beta-prop_KIB1-4 PF03478 96 - 298 5e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24880
rosa_chinensis RchiOBHm_Chr5g0044501
rosa_laevigata RLG00000034276
rosa_multiflora Rmu_co8185722.1_g000001 Rmu_sc0011598.1_g000002 Rmu_ssc0000151.1_g000013
rosa_roxburghii Rroxscaffold_1G00036510
rosa_rugosa Rorug05G0214600
rosa_samantha Rh5BG306300 Rh5CG333200 Rh5DG315600
rosa_wichuraiana Rw5G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1261
AasI GACNNNNNNGTC 2 cut(s) 32, 485
Acc36I ACCTGC 1 cut(s) 1069
AccII CGCG 1 cut(s) 620
AclWI GGATC 3 cut(s) 247, 335, 348
AcoI YGGCCR 2 cut(s) 615, 932
AcsI RAATTY 2 cut(s) 733, 896
AcuI CTGAAG 1 cut(s) 1035
AcyI GRCGYC 1 cut(s) 233
AdeI CACNNNGTG 1 cut(s) 508
AfaI GTAC 7 cut(s) 337, 355, 410, 446, 1156, 1184, 1237
AfiI CCNNNNNNNGG 3 cut(s) 386, 737, 1106
AflIII ACRYGT 2 cut(s) 356, 796
AgsI TTSAA 6 cut(s) 581, 895, 1010, 1045, 1058, 1140
AjnI CCWGG 1 cut(s) 1099
AjuI GAANNNNNNNTTGG 6 cut(s) 125, 157, 550, 582, 646, 678
AluBI AGCT 4 cut(s) 16, 55, 152, 301
AluI AGCT 4 cut(s) 16, 55, 152, 301
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 5 cut(s) 40, 94, 335, 464, 629
Alw44I GTGCAC 1 cut(s) 500
AlwI GGATC 3 cut(s) 247, 335, 348
AoxI GGCC 3 cut(s) 615, 722, 932
ApaLI GTGCAC 1 cut(s) 500
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 2 cut(s) 733, 896
ArsI GACNNNNNNTTYG 4 cut(s) 110, 142, 223, 255
AsuHPI GGTGA 6 cut(s) 256, 550, 856, 872, 878, 1012
AsuII TTCGAA 1 cut(s) 652
BaeGI GKGCMC 1 cut(s) 504
BamHI GGATCC 1 cut(s) 340
BarI GAAGNNNNNNTAC 2 cut(s) 1071, 1103
BbsI GAAGAC 3 cut(s) 30, 231, 237
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 65
BccI CCATC 7 cut(s) 68, 93, 388, 841, 857, 985, 991
BceAI ACGGC 3 cut(s) 220, 463, 919
BciT130I CCWGG 1 cut(s) 1101
BciVI GTATCC 2 cut(s) 452, 621
BclI TGATCA 1 cut(s) 1174
BcoDI GTCTC 5 cut(s) 40, 94, 335, 464, 629
BfaI CTAG 3 cut(s) 47, 668, 978
BfuAI ACCTGC 1 cut(s) 1069
BfuI GTATCC 2 cut(s) 452, 621
BisI GCNGC 6 cut(s) 79, 178, 618, 725, 728, 932
BlsI GCNGC 6 cut(s) 80, 179, 619, 726, 729, 933
BmcAI AGTACT 1 cut(s) 1156
Bme1390I CCNGG 1 cut(s) 1101
BmiI GGNNCC 3 cut(s) 310, 342, 377
BmrFI CCNGG 1 cut(s) 1101
BpiI GAAGAC 3 cut(s) 30, 231, 237
Bpu14I TTCGAA 1 cut(s) 652
Bsa29I ATCGAT 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 6 cut(s) 304, 423, 618, 780, 911, 1145
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 737, 1106
Bse118I RCCGGY 2 cut(s) 386, 1092
Bse1I ACTGG 1 cut(s) 1184
Bse3DI GCAATG 1 cut(s) 1071
BseBI CCWGG 1 cut(s) 1101
BseCI ATCGAT 1 cut(s) 293
BseDI CCNNGG 6 cut(s) 304, 423, 618, 780, 911, 1145
BseGI GGATG 2 cut(s) 42, 1256
BseLI CCNNNNNNNGG 3 cut(s) 386, 737, 1106
BseMI GCAATG 1 cut(s) 1071
BseNI ACTGG 1 cut(s) 1184
BseRI GAGGAG 5 cut(s) 176, 184, 293, 412, 719
BseSI GKGCMC 1 cut(s) 504
BseX3I CGGCCG 2 cut(s) 615, 932
BseXI GCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 620
Bsh1285I CGRYCG 3 cut(s) 618, 661, 935
BshFI GGCC 3 cut(s) 617, 724, 934
BshVI ATCGAT 1 cut(s) 293
BsiEI CGRYCG 3 cut(s) 618, 661, 935
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 4 cut(s) 387, 614, 812, 1093
BslI CCNNNNNNNGG 3 cut(s) 386, 737, 1106
BsmAI GTCTC 5 cut(s) 40, 94, 335, 464, 629
BsmBI CGTCTC 1 cut(s) 94
BsnI GGCC 3 cut(s) 617, 724, 934
Bso31I GGTCTC 1 cut(s) 464
Bsp119I TTCGAA 1 cut(s) 652
Bsp1286I GDGCHC 1 cut(s) 504
Bsp1407I TGTACA 1 cut(s) 1235
Bsp143I GATC 5 cut(s) 252, 294, 340, 658, 1174
BspANI GGCC 3 cut(s) 617, 724, 934
BspDI ATCGAT 1 cut(s) 293
BspFNI CGCG 1 cut(s) 620
BspLI GGNNCC 3 cut(s) 310, 342, 377
BspMI ACCTGC 1 cut(s) 1069
BspPI GGATC 3 cut(s) 247, 335, 348
BspQI GCTCTTC 1 cut(s) 1194
BspT104I TTCGAA 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 1071
BsrFI RCCGGY 2 cut(s) 386, 1092
BsrGI TGTACA 1 cut(s) 1235
BsrI ACTGG 1 cut(s) 1184
BssAI RCCGGY 2 cut(s) 386, 1092
BssECI CCNNGG 6 cut(s) 304, 423, 618, 780, 911, 1145
BssMI GATC 5 cut(s) 252, 294, 340, 658, 1174
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 780, 1145
Bst2UI CCWGG 1 cut(s) 1101
Bst4CI ACNGT 4 cut(s) 320, 408, 439, 1226
Bst6I CTCTTC 5 cut(s) 1040, 1074, 1125, 1166, 1194
BstACI GRCGYC 1 cut(s) 233
BstAUI TGTACA 1 cut(s) 1235
BstBI TTCGAA 1 cut(s) 652
BstC8I GCNNGC 2 cut(s) 154, 182
BstDSI CCRYGG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 42, 1256
BstFNI CGCG 1 cut(s) 620
BstKTI GATC 5 cut(s) 255, 297, 343, 661, 1177
BstMAI GTCTC 5 cut(s) 40, 94, 335, 464, 629
BstMBI GATC 5 cut(s) 252, 294, 340, 658, 1174
BstMCI CGRYCG 3 cut(s) 618, 661, 935
BstMWI GCNNNNNNNGC 3 cut(s) 84, 683, 1193
BstNI CCWGG 1 cut(s) 1101
BstNSI RCATGY 2 cut(s) 360, 800
BstSCI CCNGG 1 cut(s) 1099
BstSLI GKGCMC 1 cut(s) 504
BstUI CGCG 1 cut(s) 620
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 3 cut(s) 30, 231, 237
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BstZI CGGCCG 2 cut(s) 615, 932
Bsu15I ATCGAT 1 cut(s) 293
BsuI GTATCC 2 cut(s) 452, 621
BsuRI GGCC 3 cut(s) 617, 724, 934
BsuTUI ATCGAT 1 cut(s) 293
BtgI CCRYGG 1 cut(s) 618
BtsCI GGATG 2 cut(s) 42, 1256
BtsIMutI CAGTG 3 cut(s) 435, 1170, 1177
BveI ACCTGC 1 cut(s) 1069
Cac8I GCNNGC 2 cut(s) 154, 182
Cfr10I RCCGGY 2 cut(s) 386, 1092
Cfr42I CCGCGG 1 cut(s) 621
ClaI ATCGAT 1 cut(s) 293
CseI GACGC 2 cut(s) 76, 241
Csp6I GTAC 7 cut(s) 336, 354, 409, 445, 1155, 1183, 1236
CviAII CATG 4 cut(s) 357, 414, 552, 797
CviQI GTAC 7 cut(s) 336, 354, 409, 445, 1155, 1183, 1236
DpnI GATC 5 cut(s) 254, 296, 342, 660, 1176
DpnII GATC 5 cut(s) 252, 294, 340, 658, 1174
DraIII CACNNNGTG 1 cut(s) 508
DrdI GACNNNNNNGTC 2 cut(s) 32, 485
DseDI GACNNNNNNGTC 2 cut(s) 32, 485
EaeI YGGCCR 2 cut(s) 615, 932
EagI CGGCCG 2 cut(s) 615, 932
Eam1104I CTCTTC 5 cut(s) 1040, 1074, 1125, 1166, 1194
EarI CTCTTC 5 cut(s) 1040, 1074, 1125, 1166, 1194
EclXI CGGCCG 2 cut(s) 615, 932
Eco130I CCWWGG 2 cut(s) 780, 1145
Eco31I GGTCTC 1 cut(s) 464
Eco32I GATATC 1 cut(s) 809
Eco52I CGGCCG 2 cut(s) 615, 932
Eco57I CTGAAG 1 cut(s) 1035
EcoRII CCWGG 1 cut(s) 1099
EcoRV GATATC 1 cut(s) 809
EcoT14I CCWWGG 2 cut(s) 780, 1145
ErhI CCWWGG 2 cut(s) 780, 1145
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 4 cut(s) 360, 417, 555, 800
FatI CATG 4 cut(s) 356, 413, 551, 796
FauI CCCGC 1 cut(s) 182
FbaI TGATCA 1 cut(s) 1174
Fnu4HI GCNGC 6 cut(s) 79, 178, 618, 725, 728, 932
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 6 cut(s) 79, 178, 618, 725, 728, 932
FspBI CTAG 3 cut(s) 47, 668, 978
GluI GCNGC 6 cut(s) 79, 178, 618, 725, 728, 932
HaeIII GGCC 3 cut(s) 617, 724, 934
HapII CCGG 4 cut(s) 387, 614, 812, 1093
HgaI GACGC 2 cut(s) 76, 241
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 4 cut(s) 360, 417, 555, 800
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 3 cut(s) 212, 290, 869
HpaII CCGG 4 cut(s) 387, 614, 812, 1093
HphI GGTGA 6 cut(s) 256, 550, 856, 872, 878, 1012
Hpy166II GTNNAC 4 cut(s) 220, 502, 876, 1236
Hpy188I TCNGA 6 cut(s) 40, 118, 252, 458, 469, 915
Hpy188III TCNNGA 2 cut(s) 91, 373
Hpy8I GTNNAC 4 cut(s) 220, 502, 876, 1236
Hpy99I CGWCG 3 cut(s) 235, 479, 991
HpyAV CCTTC 2 cut(s) 783, 1117
HpyCH4III ACNGT 4 cut(s) 320, 408, 439, 1226
HpyCH4V TGCA 6 cut(s) 81, 315, 502, 586, 766, 1064
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 683, 1193
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 4 cut(s) 360, 417, 555, 800
Ksp22I TGATCA 1 cut(s) 1174
KspI CCGCGG 1 cut(s) 621
Kzo9I GATC 5 cut(s) 252, 294, 340, 658, 1174
LguI GCTCTTC 1 cut(s) 1194
LmnI GCTCC 5 cut(s) 21, 60, 189, 306, 314
Lsp1109I GCAGC 1 cut(s) 65
MaeI CTAG 3 cut(s) 47, 668, 978
MaeIII GTNAC 3 cut(s) 269, 973, 1168
MalI GATC 5 cut(s) 254, 296, 342, 660, 1176
MboI GATC 5 cut(s) 252, 294, 340, 658, 1174
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 4 cut(s) 125, 733, 896, 1256
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 4 cut(s) 63, 141, 169, 447
MseI TTAA 2 cut(s) 71, 888
MspA1I CMGCKG 2 cut(s) 78, 620
MspI CCGG 4 cut(s) 387, 614, 812, 1093
MspR9I CCNGG 1 cut(s) 1101
MvaI CCWGG 1 cut(s) 1101
MvnI CGCG 1 cut(s) 620
MwoI GCNNNNNNNGC 3 cut(s) 84, 683, 1193
NdeII GATC 5 cut(s) 252, 294, 340, 658, 1174
NlaIII CATG 4 cut(s) 360, 417, 555, 800
NlaIV GGNNCC 3 cut(s) 310, 342, 377
NmeAIII GCCGAG 2 cut(s) 285, 404
NmuCI GTSAC 2 cut(s) 973, 1168
NspI RCATGY 2 cut(s) 360, 800
NspV TTCGAA 1 cut(s) 652
PciI ACATGT 2 cut(s) 356, 796
PciSI GCTCTTC 1 cut(s) 1194
PcsI WCGNNNNNNNCGW 3 cut(s) 239, 248, 658
PfeI GAWTC 2 cut(s) 212, 290
PflFI GACNNNGTC 1 cut(s) 235
PkrI GCNGC 6 cut(s) 80, 179, 619, 726, 729, 933
Ple19I CGATCG 1 cut(s) 661
PleI GAGTC 1 cut(s) 877
PpsI GAGTC 1 cut(s) 877
PscI ACATGT 2 cut(s) 356, 796
PsiI TTATAA 1 cut(s) 1261
Psp6I CCWGG 1 cut(s) 1099
PspGI CCWGG 1 cut(s) 1099
PspN4I GGNNCC 3 cut(s) 310, 342, 377
PsuI RGATCY 1 cut(s) 340
PsyI GACNNNGTC 1 cut(s) 235
PvuI CGATCG 1 cut(s) 661
RsaI GTAC 7 cut(s) 337, 355, 410, 446, 1156, 1184, 1237
RsaNI GTAC 7 cut(s) 336, 354, 409, 445, 1155, 1183, 1236
SacII CCGCGG 1 cut(s) 621
SapI GCTCTTC 1 cut(s) 1194
SaqAI TTAA 2 cut(s) 71, 888
SatI GCNGC 6 cut(s) 79, 178, 618, 725, 728, 932
Sau3AI GATC 5 cut(s) 252, 294, 340, 658, 1174
ScaI AGTACT 1 cut(s) 1156
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 1 cut(s) 1101
SduI GDGCHC 1 cut(s) 504
Sfr303I CCGCGG 1 cut(s) 621
SfuI TTCGAA 1 cut(s) 652
SgrBI CCGCGG 1 cut(s) 621
Sse9I AATT 4 cut(s) 125, 733, 896, 1256
SspMI CTAG 3 cut(s) 47, 668, 978
StyD4I CCNGG 1 cut(s) 1099
StyI CCWWGG 2 cut(s) 780, 1145
TaaI ACNGT 4 cut(s) 320, 408, 439, 1226
TaqI TCGA 6 cut(s) 92, 210, 293, 652, 805, 986
TaqII GACCGA 1 cut(s) 488
TasI AATT 4 cut(s) 125, 733, 896, 1256
TatI WGTACW 3 cut(s) 353, 1154, 1235
TauI GCSGC 5 cut(s) 180, 620, 727, 730, 934
TfiI GAWTC 2 cut(s) 212, 290
Tru1I TTAA 2 cut(s) 71, 888
Tru9I TTAA 2 cut(s) 71, 888
TscAI CASTG 3 cut(s) 442, 1177, 1184
TseFI GTSAC 2 cut(s) 973, 1168
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 2 cut(s) 973, 1168
TspDTI ATGAA 3 cut(s) 97, 358, 1092
TspGWI ACGGA 2 cut(s) 205, 353
TspRI CASTG 3 cut(s) 442, 1177, 1184
Tth111I GACNNNGTC 1 cut(s) 235
VneI GTGCAC 1 cut(s) 500
XapI RAATTY 2 cut(s) 733, 896
XceI RCATGY 2 cut(s) 360, 800
XspI CTAG 3 cut(s) 47, 668, 978
ZrmI AGTACT 1 cut(s) 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.