Rmu_ssc0000151.1_g000013

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000151.1
OG0017630
Physical Location & Seq
Reverse (-)
47831 .. 49363
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000151.1_g000013.1.cds

Sequence Viewer

Length: 1320 bp
atgacttgtgagggaaggaataatacaactagtattgtcttaacggccgggttacttaaatgggctgcgtaccctgtatctagttcggagtcaaactcaaagtcagtgtttacggcaaacacaaactccaaactccaaacgacaccgtctttccgacagccaccaccgccgttcaatgacggaaaaccaactaccggaagacatcatagtctccgacatcctgctcgccgccaccccaccttgacccgccgcctcctcctctactgctccccctcccaagtcgaatcccttgacttggaaacgacgccgtcttcgtcttctccgatccgcaacctcacctgtaaactgaacaaccaacccgaatcgatcaagctcctcggctcctgcaacggcctggtatgcgtctgtacggattctactttaagcagttgtgatcttttcatctggaacccatcaactgggttcttgcgtaatctaccgtacccaggtttttcctcggcaacacacaccgttctctacggcgggttcggttacttgtctgccacggacgactacaaggtcgtggtggcggcggacaatgtgttcgactacggcgataatgtggtggaggtgaaggtgttgtcatggagaacaggtgtttggagaaagattgaagtgcaccctttgttgtcttacacgctgtacccggcggcggttgtggtgggggagacgcttcattggtttcggaacgatcgctggttagggtcggcgattattggttttgatttggacaaggaggagtttagggagatgccgccgccgccgccgagtttttggcagagatatgatagagattatgttgggtgtgtgggttgttggggaggaaggctacatgtgtttcgatatacggctcgtgtttgcgatgttatggagttatgggttaggggtgagaatggtgatggtgagtcgtggaccgaggtgttcaagttgaaaatagccgatgagcctcggaaggctgtgtttctgcggccgtttttggctgtgggaagtagtgcggttgtggcgaaagtgactaggaacgcgacgatggagatggtcaggattgaacctagagatgaggaaccggttgtagatatgtttaagaggggggttgaaccggcaatgattctatatgaagagagcctgcaccggcttcctggttgtggtgtggtggaagaagagaaggtggaagagattcaaaccccaatatttggtgctctattctggattactgatcactggtactctattctggctttggttggttttcttatttctctgttctgtatacctgtaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

439

Amino Acids

49.36

Weight (kDa)

6.39

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24880
rosa_chinensis RchiOBHm_Chr5g0044501
rosa_laevigata RLG00000034276
rosa_multiflora Rmu_co8185722.1_g000001 Rmu_sc0011598.1_g000002 Rmu_ssc0000151.1_g000013
rosa_roxburghii Rroxscaffold_1G00036510
rosa_rugosa Rorug05G0214600
rosa_samantha Rh5BG306300 Rh5CG333200 Rh5DG315600
rosa_wichuraiana Rw5G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 207, 557
AccB7I CCANNNNNTGG 2 cut(s) 458, 1229
AccI GTMKAC 1 cut(s) 1306
AccII CGCG 1 cut(s) 1061
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 2 cut(s) 45, 1007
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 5 cut(s) 71, 409, 482, 683, 1262
AfiI CCNNNNNNNGG 7 cut(s) 194, 295, 458, 485, 691, 1181, 1229
AflIII ACRYGT 1 cut(s) 871
AgeI ACCGGT 1 cut(s) 1102
AgsI TTSAA 7 cut(s) 175, 653, 964, 970, 1085, 1133, 1217
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 3 cut(s) 393, 484, 1174
AjuI GAANNNNNNNTTGG 2 cut(s) 622, 654
AloI GAACNNNNNNTCC 2 cut(s) 566, 598
AluBI AGCT 1 cut(s) 373
AluI AGCT 1 cut(s) 373
Alw21I GWGCWC 2 cut(s) 660, 1237
Alw26I GTCTC 2 cut(s) 215, 701
Alw44I GTGCAC 1 cut(s) 656
AlwI GGATC 1 cut(s) 319
AoxI GGCC 3 cut(s) 45, 391, 1007
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 1 cut(s) 65
ArsI GACNNNNNNTTYG 6 cut(s) 86, 118, 295, 327, 566, 598
AsiGI ACCGGT 1 cut(s) 1102
Asp700I GAANNNNTTC 1 cut(s) 1212
AspS9I GGNCC 1 cut(s) 951
AsuC2I CCSGG 2 cut(s) 49, 686
AsuHPI GGTGA 5 cut(s) 328, 622, 938, 947, 953
AvaII GGWCC 1 cut(s) 951
BaeGI GKGCMC 1 cut(s) 660
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 3 cut(s) 205, 303, 309
Bbv12I GWGCWC 2 cut(s) 660, 1237
BbvI GCAGC 1 cut(s) 52
BccI CCATC 4 cut(s) 460, 932, 1060, 1066
BceAI ACGGC 9 cut(s) 60, 129, 154, 292, 406, 535, 607, 903, 994
BciT130I CCWGG 3 cut(s) 395, 486, 1176
BclI TGATCA 1 cut(s) 1252
BcnI CCSGG 2 cut(s) 49, 686
BcoDI GTCTC 2 cut(s) 215, 701
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 4 cut(s) 30, 81, 1053, 1089
Bme1390I CCNGG 5 cut(s) 49, 395, 486, 686, 1176
Bme18I GGWCC 1 cut(s) 951
BmgT120I GGNCC 1 cut(s) 951
BmiI GGNNCC 3 cut(s) 382, 449, 1101
BmrFI CCNGG 5 cut(s) 49, 395, 486, 686, 1176
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 1 cut(s) 780
BmuI ACTGGG 1 cut(s) 468
BpiI GAAGAC 3 cut(s) 205, 303, 309
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpuMI CCSGG 2 cut(s) 49, 686
Bsa29I ATCGAT 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 6 cut(s) 376, 484, 495, 543, 954, 986
BsaWI WCCGGW 2 cut(s) 194, 1102
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 619, 649
Bsc4I CCNNNNNNNGG 7 cut(s) 194, 295, 458, 485, 691, 1181, 1229
Bse118I RCCGGY 3 cut(s) 1102, 1135, 1167
Bse1I ACTGG 2 cut(s) 463, 1262
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 3 cut(s) 395, 486, 1176
BseCI ATCGAT 1 cut(s) 365
BseDI CCNNGG 6 cut(s) 376, 484, 495, 543, 954, 986
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 7 cut(s) 194, 295, 458, 485, 691, 1181, 1229
BseMI GCAATG 1 cut(s) 1146
BseNI ACTGG 2 cut(s) 463, 1262
BseRI GAGGAG 4 cut(s) 245, 248, 365, 791
BseSI GKGCMC 1 cut(s) 660
BseX3I CGGCCG 2 cut(s) 45, 1007
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 1148
Bsh1236I CGCG 1 cut(s) 1061
Bsh1285I CGRYCG 3 cut(s) 48, 733, 1010
BshFI GGCC 3 cut(s) 47, 393, 1009
BshTI ACCGGT 1 cut(s) 1102
BshVI ATCGAT 1 cut(s) 365
BsiEI CGRYCG 3 cut(s) 48, 733, 1010
BsiHKAI GWGCWC 2 cut(s) 660, 1237
BsiSI CCGG 6 cut(s) 48, 195, 686, 1103, 1136, 1168
BslI CCNNNNNNNGG 7 cut(s) 194, 295, 458, 485, 691, 1181, 1229
BsmAI GTCTC 2 cut(s) 215, 701
BsmBI CGTCTC 1 cut(s) 701
BsnI GGCC 3 cut(s) 47, 393, 1009
Bsp1286I GDGCHC 2 cut(s) 660, 1237
Bsp143I GATC 5 cut(s) 324, 366, 433, 730, 1252
BspANI GGCC 3 cut(s) 47, 393, 1009
BspDI ATCGAT 1 cut(s) 365
BspFNI CGCG 1 cut(s) 1061
BspLI GGNNCC 3 cut(s) 382, 449, 1101
BspPI GGATC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 1146
BsrFI RCCGGY 3 cut(s) 1102, 1135, 1167
BsrI ACTGG 2 cut(s) 463, 1262
BssAI RCCGGY 3 cut(s) 1102, 1135, 1167
BssECI CCNNGG 6 cut(s) 376, 484, 495, 543, 954, 986
BssMI GATC 5 cut(s) 324, 366, 433, 730, 1252
BssNAI GTATAC 1 cut(s) 1307
BssNI GRCGYC 1 cut(s) 305
BssSI CACGAG 1 cut(s) 891
Bst1107I GTATAC 1 cut(s) 1307
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 3 cut(s) 395, 486, 1176
Bst4CI ACNGT 3 cut(s) 147, 480, 511
Bst6I CTCTTC 3 cut(s) 1149, 1191, 1203
BstACI GRCGYC 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 226, 1163
BstDSI CCRYGG 1 cut(s) 543
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 1061
BstKTI GATC 5 cut(s) 327, 369, 436, 733, 1255
BstMAI GTCTC 2 cut(s) 215, 701
BstMBI GATC 5 cut(s) 324, 366, 433, 730, 1252
BstMCI CGRYCG 3 cut(s) 48, 733, 1010
BstMWI GCNNNNNNNGC 5 cut(s) 166, 399, 799, 802, 1040
BstNI CCWGG 3 cut(s) 395, 486, 1176
BstNSI RCATGY 1 cut(s) 875
BstSCI CCNGG 5 cut(s) 47, 393, 484, 684, 1174
BstSLI GKGCMC 1 cut(s) 660
BstUI CGCG 1 cut(s) 1061
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 3 cut(s) 205, 303, 309
BstZ17I GTATAC 1 cut(s) 1307
BstZI CGGCCG 2 cut(s) 45, 1007
Bsu15I ATCGAT 1 cut(s) 365
BsuRI GGCC 3 cut(s) 47, 393, 1009
BsuTUI ATCGAT 1 cut(s) 365
BtgI CCRYGG 1 cut(s) 543
BtgZI GCGATG 1 cut(s) 915
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 111, 1255
Cac8I GCNNGC 2 cut(s) 226, 1163
Cfr10I RCCGGY 3 cut(s) 1102, 1135, 1167
Cfr13I GGNCC 1 cut(s) 951
ClaI ATCGAT 1 cut(s) 365
CseI GACGC 3 cut(s) 313, 391, 718
Csp6I GTAC 5 cut(s) 70, 408, 481, 682, 1261
CspAI ACCGGT 1 cut(s) 1102
CviAII CATG 2 cut(s) 624, 872
CviQI GTAC 5 cut(s) 70, 408, 481, 682, 1261
DpnI GATC 5 cut(s) 326, 368, 435, 732, 1254
DpnII GATC 5 cut(s) 324, 366, 433, 730, 1252
DrdI GACNNNNNNGTC 2 cut(s) 207, 557
DseDI GACNNNNNNGTC 2 cut(s) 207, 557
EaeI YGGCCR 2 cut(s) 45, 1007
EagI CGGCCG 2 cut(s) 45, 1007
Eam1104I CTCTTC 3 cut(s) 1149, 1191, 1203
EarI CTCTTC 3 cut(s) 1149, 1191, 1203
EciI GGCGGA 1 cut(s) 587
EclXI CGGCCG 2 cut(s) 45, 1007
Eco47I GGWCC 1 cut(s) 951
Eco52I CGGCCG 2 cut(s) 45, 1007
EcoRII CCWGG 3 cut(s) 393, 484, 1174
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 2 cut(s) 627, 875
FatI CATG 2 cut(s) 623, 871
FauI CCCGC 2 cut(s) 254, 515
FbaI TGATCA 1 cut(s) 1252
FblI GTMKAC 1 cut(s) 1306
FokI GGATG 1 cut(s) 204
FspBI CTAG 4 cut(s) 30, 81, 1053, 1089
HaeIII GGCC 3 cut(s) 47, 393, 1009
HapII CCGG 6 cut(s) 48, 195, 686, 1103, 1136, 1168
HgaI GACGC 3 cut(s) 313, 391, 718
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 2 cut(s) 627, 875
HinfI GANTC 7 cut(s) 89, 284, 362, 413, 944, 1144, 1213
HpaII CCGG 6 cut(s) 48, 195, 686, 1103, 1136, 1168
HphI GGTGA 5 cut(s) 328, 622, 938, 947, 953
Hpy166II GTNNAC 5 cut(s) 111, 344, 658, 951, 1307
Hpy188I TCNGA 6 cut(s) 88, 155, 215, 324, 726, 990
Hpy188III TCNNGA 3 cut(s) 445, 1078, 1243
Hpy8I GTNNAC 5 cut(s) 111, 344, 658, 951, 1307
Hpy99I CGWCG 2 cut(s) 307, 1066
HpyAV CCTTC 5 cut(s) 9, 607, 858, 985, 1195
HpyCH4III ACNGT 3 cut(s) 147, 480, 511
HpyCH4V TGCA 3 cut(s) 387, 658, 1165
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 399, 799, 802, 1040
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 2 cut(s) 627, 875
Ksp22I TGATCA 1 cut(s) 1252
Kzo9I GATC 5 cut(s) 324, 366, 433, 730, 1252
LmnI GCTCC 3 cut(s) 272, 378, 386
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 780
MaeI CTAG 4 cut(s) 30, 81, 1053, 1089
MaeIII GTNAC 3 cut(s) 51, 530, 1048
MalI GATC 5 cut(s) 326, 368, 435, 732, 1254
MboI GATC 5 cut(s) 324, 366, 433, 730, 1252
MboII GAAGA 7 cut(s) 210, 303, 309, 1166, 1205, 1208, 1220
MhlI GDGCHC 2 cut(s) 660, 1237
MlyI GAGTC 2 cut(s) 98, 953
MmeI TCCRAC 2 cut(s) 178, 238
MroXI GAANNNNTTC 1 cut(s) 1212
MseI TTAA 4 cut(s) 41, 57, 422, 1119
MspI CCGG 6 cut(s) 48, 195, 686, 1103, 1136, 1168
MspR9I CCNGG 5 cut(s) 49, 395, 486, 686, 1176
MvaI CCWGG 3 cut(s) 395, 486, 1176
MvnI CGCG 1 cut(s) 1061
MwoI GCNNNNNNNGC 5 cut(s) 166, 399, 799, 802, 1040
NciI CCSGG 2 cut(s) 49, 686
NdeII GATC 5 cut(s) 324, 366, 433, 730, 1252
NlaIII CATG 2 cut(s) 627, 875
NlaIV GGNNCC 3 cut(s) 382, 449, 1101
NmeAIII GCCGAG 3 cut(s) 357, 476, 831
NmuCI GTSAC 1 cut(s) 1048
NspI RCATGY 1 cut(s) 875
PciI ACATGT 1 cut(s) 871
PcsI WCGNNNNNNNCGW 3 cut(s) 311, 320, 591
PdmI GAANNNNTTC 1 cut(s) 1212
PfeI GAWTC 5 cut(s) 284, 362, 413, 1144, 1213
PflFI GACNNNGTC 2 cut(s) 145, 307
PflMI CCANNNNNTGG 2 cut(s) 458, 1229
PinAI ACCGGT 1 cut(s) 1102
Ple19I CGATCG 1 cut(s) 733
PleI GAGTC 2 cut(s) 97, 952
PpsI GAGTC 2 cut(s) 97, 952
PscI ACATGT 1 cut(s) 871
Psp6I CCWGG 3 cut(s) 393, 484, 1174
PspGI CCWGG 3 cut(s) 393, 484, 1174
PspN4I GGNNCC 3 cut(s) 382, 449, 1101
PspPI GGNCC 1 cut(s) 951
PsyI GACNNNGTC 2 cut(s) 145, 307
PvuI CGATCG 1 cut(s) 733
RsaI GTAC 5 cut(s) 71, 409, 482, 683, 1262
RsaNI GTAC 5 cut(s) 70, 408, 481, 682, 1261
SaqAI TTAA 4 cut(s) 41, 57, 422, 1119
Sau3AI GATC 5 cut(s) 324, 366, 433, 730, 1252
Sau96I GGNCC 1 cut(s) 951
SchI GAGTC 2 cut(s) 98, 953
ScrFI CCNGG 5 cut(s) 49, 395, 486, 686, 1176
SduI GDGCHC 2 cut(s) 660, 1237
SfaNI GCATC 1 cut(s) 780
SinI GGWCC 1 cut(s) 951
SpeI ACTAGT 1 cut(s) 29
SspI AATATT 1 cut(s) 1227
SspMI CTAG 4 cut(s) 30, 81, 1053, 1089
StyD4I CCNGG 5 cut(s) 47, 393, 484, 684, 1174
TaaI ACNGT 3 cut(s) 147, 480, 511
TaqI TCGA 4 cut(s) 282, 365, 585, 880
TaqII GACCGA 1 cut(s) 968
TauI GCSGC 9 cut(s) 231, 252, 572, 692, 796, 799, 802, 805, 1009
TfiI GAWTC 5 cut(s) 284, 362, 413, 1144, 1213
Tru1I TTAA 4 cut(s) 41, 57, 422, 1119
Tru9I TTAA 4 cut(s) 41, 57, 422, 1119
TscAI CASTG 2 cut(s) 111, 1262
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 3 cut(s) 430, 704, 1167
TspGWI ACGGA 3 cut(s) 195, 425, 560
TspRI CASTG 2 cut(s) 111, 1262
Tth111I GACNNNGTC 2 cut(s) 145, 307
Van91I CCANNNNNTGG 2 cut(s) 458, 1229
VneI GTGCAC 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 951
XceI RCATGY 1 cut(s) 875
XmiI GTMKAC 1 cut(s) 1306
XmnI GAANNNNTTC 1 cut(s) 1212
XspI CTAG 4 cut(s) 30, 81, 1053, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.