RLG00000034276

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017630
Physical Location & Seq
Reverse (-)
39800866 .. 39802571
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034276

Sequence Viewer

Length: 1254 bp
ATGCATGTAGGGACTTCTCTTGATGCGAATTCAAACAAGGTCGAAGATGCAGATGGCTATATTTCCTTCTCTATAATCATGTTTTTGGCACATTTTGGCTATCCTATGCAGAAATTTGCAGTCAAACTCATGAAGCTATATAAAGGGTTACCGGGTCAACCCATCCTCCGAACGGGTCCTTACACCCAGAAAGAAAAAGACAGAGGGCAAGTCCTCGAATCCCTTGACCTGGAAACGACGCCGTCTCCGTCTTCTCCGATTCGCACCCACACCTGTAAACTGAACAACCAACCCGAATCGATCAAGCTCCTCGGCTCCTGCAACGGCCTGGTGTGCGTCTGTACGGATTCTACTTTAAGCAGTTGTGATCTTTTCATCTGGAACCCATCAACTGGTTTCTTGCGTAATCTACCGTACCCGTGTTTTTCCTCGGCGACCCACACTGTTCTGTACGGCGGGTTCGGGTACTTGTCGGCGGCGGACGACTACAAGGTCGTGGTGGCGGCGGACAATGTGTTCGACTACGGCGATAATGTGGTGGAGGTGAAGGTGTTGTCATGGAGAACAGGGGTTTGGAGAAAGATTGAAGTGCACCCTCTGTTGTCCTACACGTTGTACCCGGCGGCGGTTGTGGTGGGGGAGACGCTTCATTGGTTTCGGAACGATCGTTGGTTAGGGTCGGCGATTATTGGTTTTGATTTGGGCAAGGAGGAGTTTAGGGAGATGCCGCCGCCGCCGCCGAGTTTTTGGCAGAGATATGATAGAGATTATGTTGGGTGTGTGGGTTGTTGGGGAGGAAGGCTACATGTGTTTCGATATACGGCCCGTGTTTGCGATGTTATGGAGTTATGGGTTAGGGGTGAGAATGGTGATGGTGAGTCGTGGACCGAGGTGTTCAAGTTGAAAATAGCCGATGAGCCTCGGAAGGCTGTGTTTCTGCGGCCGTTTTTGGCTGTGGGAAGTAGTGCAGTTGTGGCGAAAGTGACTAGGAACGCGACGATGGAGATGGTGAGGATTGAACCTAGAGATGAGGAACCGGTTGTGGATATGTTTAAGAGGGGGGTTGAACCTGCAATGATTCTATATGAAGAGAGCCTGCACCGGCTTCCTGGTTGTGGTGCGGTGGAAGAAGAGAAGGTGGAAGAGATTCGAACCCCAATATTTGGTGCTCTGTTCTGGATTACTGATCACTGGTACTCTATTCTGGCTTTGGTTGGTTTTCTTATTTCTCTGTGCTATATACCTGTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

418

Amino Acids

47.04

Weight (kDa)

5.79

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 86 - 297 3.4e-14 F-box associated beta propeller domain
FBA_1 PF07734 87 - 309 3e-19 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 96 - 237 4e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24880
rosa_chinensis RchiOBHm_Chr5g0044501
rosa_laevigata RLG00000034276
rosa_multiflora Rmu_co8185722.1_g000001 Rmu_sc0011598.1_g000002 Rmu_ssc0000151.1_g000013
rosa_roxburghii Rroxscaffold_1G00036510
rosa_rugosa Rorug05G0214600
rosa_samantha Rh5BG306300 Rh5CG333200 Rh5DG315600
rosa_wichuraiana Rw5G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 491
Acc36I ACCTGC 1 cut(s) 1078
AccB7I CCANNNNNTGG 2 cut(s) 392, 1163
AccII CGCG 1 cut(s) 995
AcoI YGGCCR 1 cut(s) 941
AcsI RAATTY 2 cut(s) 28, 113
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 6 cut(s) 343, 416, 452, 467, 617, 1196
AfiI CCNNNNNNNGG 6 cut(s) 172, 229, 392, 625, 1115, 1163
AflIII ACRYGT 2 cut(s) 609, 805
AgeI ACCGGT 1 cut(s) 1036
AgsI TTSAA 6 cut(s) 33, 587, 898, 904, 1019, 1067
AjnI CCWGG 3 cut(s) 228, 327, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 556, 588
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
AluBI AGCT 2 cut(s) 136, 307
AluI AGCT 2 cut(s) 136, 307
Alw21I GWGCWC 2 cut(s) 594, 1171
Alw26I GTCTC 2 cut(s) 249, 635
Alw44I GTGCAC 1 cut(s) 590
AoxI GGCC 3 cut(s) 325, 822, 941
ApaLI GTGCAC 1 cut(s) 590
ApoI RAATTY 2 cut(s) 28, 113
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AsiGI ACCGGT 1 cut(s) 1036
Asp700I GAANNNNTTC 1 cut(s) 1146
AspS9I GGNCC 3 cut(s) 176, 823, 885
AsuC2I CCSGG 2 cut(s) 153, 620
AsuHPI GGTGA 5 cut(s) 556, 872, 881, 887, 1021
AsuII TTCGAA 1 cut(s) 1150
AvaII GGWCC 2 cut(s) 176, 885
BaeGI GKGCMC 1 cut(s) 594
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 594, 1171
BccI CCATC 6 cut(s) 47, 170, 394, 866, 994, 1000
BceAI ACGGC 6 cut(s) 226, 340, 469, 541, 837, 928
BciT130I CCWGG 3 cut(s) 230, 329, 1110
BclI TGATCA 1 cut(s) 1186
BcnI CCSGG 2 cut(s) 153, 620
BcoDI GTCTC 2 cut(s) 249, 635
BfaI CTAG 2 cut(s) 987, 1023
BfuAI ACCTGC 1 cut(s) 1078
BisI GCNGC 8 cut(s) 477, 504, 624, 728, 731, 734, 737, 941
BlsI GCNGC 8 cut(s) 478, 505, 625, 729, 732, 735, 738, 942
Bme1390I CCNGG 5 cut(s) 153, 230, 329, 620, 1110
Bme18I GGWCC 2 cut(s) 176, 885
BmgT120I GGNCC 3 cut(s) 176, 823, 885
BmiI GGNNCC 4 cut(s) 177, 316, 383, 1035
BmrFI CCNGG 5 cut(s) 153, 230, 329, 620, 1110
BmsI GCATC 3 cut(s) 13, 37, 714
BpiI GAAGAC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 1150
BpuMI CCSGG 2 cut(s) 153, 620
Bsa29I ATCGAT 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 4 cut(s) 310, 429, 888, 920
BsaWI WCCGGW 1 cut(s) 1036
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 229, 259
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 229, 392, 625, 1115, 1163
Bse118I RCCGGY 2 cut(s) 1036, 1101
Bse1I ACTGG 2 cut(s) 397, 1196
Bse3DI GCAATG 1 cut(s) 1080
BseBI CCWGG 3 cut(s) 230, 329, 1110
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 4 cut(s) 310, 429, 888, 920
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 6 cut(s) 172, 229, 392, 625, 1115, 1163
BseMI GCAATG 1 cut(s) 1080
BseNI ACTGG 2 cut(s) 397, 1196
BseRI GAGGAG 2 cut(s) 299, 725
BseSI GKGCMC 1 cut(s) 594
BseX3I CGGCCG 1 cut(s) 941
BsgI GTGCAG 2 cut(s) 987, 1082
Bsh1236I CGCG 1 cut(s) 995
Bsh1285I CGRYCG 2 cut(s) 667, 944
BshFI GGCC 3 cut(s) 327, 824, 943
BshTI ACCGGT 1 cut(s) 1036
BshVI ATCGAT 1 cut(s) 299
BsiEI CGRYCG 2 cut(s) 667, 944
BsiHKAI GWGCWC 2 cut(s) 594, 1171
BsiSI CCGG 4 cut(s) 152, 620, 1037, 1102
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 6 cut(s) 172, 229, 392, 625, 1115, 1163
BsmAI GTCTC 2 cut(s) 249, 635
BsmBI CGTCTC 2 cut(s) 249, 635
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 3 cut(s) 327, 824, 943
Bsp119I TTCGAA 1 cut(s) 1150
Bsp1286I GDGCHC 2 cut(s) 594, 1171
Bsp143I GATC 4 cut(s) 300, 367, 664, 1186
BspANI GGCC 3 cut(s) 327, 824, 943
BspDI ATCGAT 1 cut(s) 299
BspFNI CGCG 1 cut(s) 995
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 4 cut(s) 177, 316, 383, 1035
BspMI ACCTGC 1 cut(s) 1078
BspT104I TTCGAA 1 cut(s) 1150
BsrDI GCAATG 1 cut(s) 1080
BsrFI RCCGGY 2 cut(s) 1036, 1101
BsrI ACTGG 2 cut(s) 397, 1196
BssAI RCCGGY 2 cut(s) 1036, 1101
BssECI CCNNGG 4 cut(s) 310, 429, 888, 920
BssMI GATC 4 cut(s) 300, 367, 664, 1186
BssNI GRCGYC 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 230, 329, 1110
Bst4CI ACNGT 2 cut(s) 414, 445
Bst6I CTCTTC 3 cut(s) 1083, 1125, 1137
BstACI GRCGYC 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 1150
BstC8I GCNNGC 1 cut(s) 1097
BstEII GGTNACC 1 cut(s) 147
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 995
BstKTI GATC 4 cut(s) 303, 370, 667, 1189
BstMAI GTCTC 2 cut(s) 249, 635
BstMBI GATC 4 cut(s) 300, 367, 664, 1186
BstMCI CGRYCG 2 cut(s) 667, 944
BstMWI GCNNNNNNNGC 4 cut(s) 333, 733, 736, 974
BstNI CCWGG 3 cut(s) 230, 329, 1110
BstNSI RCATGY 2 cut(s) 8, 809
BstPI GGTNACC 1 cut(s) 147
BstSCI CCNGG 5 cut(s) 151, 228, 327, 618, 1108
BstSLI GKGCMC 1 cut(s) 594
BstUI CGCG 1 cut(s) 995
BstV2I GAAGAC 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 941
Bsu15I ATCGAT 1 cut(s) 299
BsuRI GGCC 3 cut(s) 327, 824, 943
BsuTUI ATCGAT 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 849
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 441, 1189
BveI ACCTGC 1 cut(s) 1078
Cac8I GCNNGC 1 cut(s) 1097
CciI TCATGA 1 cut(s) 129
Cfr10I RCCGGY 2 cut(s) 1036, 1101
Cfr13I GGNCC 3 cut(s) 176, 823, 885
ClaI ATCGAT 1 cut(s) 299
CseI GACGC 3 cut(s) 247, 325, 652
Csp6I GTAC 6 cut(s) 342, 415, 451, 466, 616, 1195
CspAI ACCGGT 1 cut(s) 1036
CviAII CATG 5 cut(s) 5, 79, 130, 558, 806
CviQI GTAC 6 cut(s) 342, 415, 451, 466, 616, 1195
DpnI GATC 4 cut(s) 302, 369, 666, 1188
DpnII GATC 4 cut(s) 300, 367, 664, 1186
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
EaeI YGGCCR 1 cut(s) 941
EagI CGGCCG 1 cut(s) 941
Eam1104I CTCTTC 3 cut(s) 1083, 1125, 1137
EarI CTCTTC 3 cut(s) 1083, 1125, 1137
EciI GGCGGA 2 cut(s) 494, 521
EclXI CGGCCG 1 cut(s) 941
Eco47I GGWCC 2 cut(s) 176, 885
Eco52I CGGCCG 1 cut(s) 941
Eco91I GGTNACC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 28
EcoRII CCWGG 3 cut(s) 228, 327, 1108
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 2 cut(s) 249, 635
FaeI CATG 5 cut(s) 8, 82, 133, 561, 809
FaqI GGGAC 1 cut(s) 25
FatI CATG 5 cut(s) 4, 78, 129, 557, 805
FauI CCCGC 1 cut(s) 449
FbaI TGATCA 1 cut(s) 1186
Fnu4HI GCNGC 8 cut(s) 477, 504, 624, 728, 731, 734, 737, 941
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 8 cut(s) 477, 504, 624, 728, 731, 734, 737, 941
FspBI CTAG 2 cut(s) 987, 1023
GluI GCNGC 8 cut(s) 477, 504, 624, 728, 731, 734, 737, 941
HaeIII GGCC 3 cut(s) 327, 824, 943
HapII CCGG 4 cut(s) 152, 620, 1037, 1102
HgaI GACGC 3 cut(s) 247, 325, 652
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 5 cut(s) 8, 82, 133, 561, 809
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 7 cut(s) 218, 259, 296, 347, 878, 1078, 1147
HpaII CCGG 4 cut(s) 152, 620, 1037, 1102
HphI GGTGA 5 cut(s) 556, 872, 881, 887, 1021
Hpy166II GTNNAC 4 cut(s) 158, 278, 592, 885
Hpy188I TCNGA 4 cut(s) 170, 258, 660, 924
Hpy188III TCNNGA 4 cut(s) 20, 130, 379, 1177
Hpy8I GTNNAC 4 cut(s) 158, 278, 592, 885
Hpy99I CGWCG 2 cut(s) 241, 1000
HpyAV CCTTC 5 cut(s) 76, 541, 792, 919, 1129
HpyCH4III ACNGT 2 cut(s) 414, 445
HpyCH4IV ACGT 1 cut(s) 611
HpyCH4V TGCA 9 cut(s) 4, 50, 109, 119, 321, 592, 968, 1073, 1099
HpyF10VI GCNNNNNNNGC 4 cut(s) 333, 733, 736, 974
HpySE526I ACGT 1 cut(s) 611
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 5 cut(s) 8, 82, 133, 561, 809
Ksp22I TGATCA 1 cut(s) 1186
Kzo9I GATC 4 cut(s) 300, 367, 664, 1186
LmnI GCTCC 2 cut(s) 312, 320
LweI GCATC 3 cut(s) 13, 37, 714
MaeI CTAG 2 cut(s) 987, 1023
MaeII ACGT 1 cut(s) 611
MaeIII GTNAC 2 cut(s) 147, 982
MalI GATC 4 cut(s) 302, 369, 666, 1188
MboI GATC 4 cut(s) 300, 367, 664, 1186
MboII GAAGA 6 cut(s) 56, 243, 1100, 1139, 1142, 1154
MhlI GDGCHC 2 cut(s) 594, 1171
MluCI AATT 2 cut(s) 28, 113
MlyI GAGTC 1 cut(s) 887
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 1146
MseI TTAA 2 cut(s) 356, 1053
MspI CCGG 4 cut(s) 152, 620, 1037, 1102
MspR9I CCNGG 5 cut(s) 153, 230, 329, 620, 1110
MvaI CCWGG 3 cut(s) 230, 329, 1110
MvnI CGCG 1 cut(s) 995
MwoI GCNNNNNNNGC 4 cut(s) 333, 733, 736, 974
NciI CCSGG 2 cut(s) 153, 620
NdeII GATC 4 cut(s) 300, 367, 664, 1186
NlaIII CATG 5 cut(s) 8, 82, 133, 561, 809
NlaIV GGNNCC 4 cut(s) 177, 316, 383, 1035
NmeAIII GCCGAG 3 cut(s) 291, 410, 765
NmuCI GTSAC 1 cut(s) 982
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 809
NspV TTCGAA 1 cut(s) 1150
PagI TCATGA 1 cut(s) 129
PciI ACATGT 1 cut(s) 805
PcsI WCGNNNNNNNCGW 3 cut(s) 245, 525, 664
PdmI GAANNNNTTC 1 cut(s) 1146
PfeI GAWTC 6 cut(s) 218, 259, 296, 347, 1078, 1147
PflFI GACNNNGTC 1 cut(s) 241
PflMI CCANNNNNTGG 2 cut(s) 392, 1163
PinAI ACCGGT 1 cut(s) 1036
PkrI GCNGC 8 cut(s) 478, 505, 625, 729, 732, 735, 738, 942
Ple19I CGATCG 1 cut(s) 667
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
PpuMI RGGWCCY 1 cut(s) 176
PscI ACATGT 1 cut(s) 805
Psp5II RGGWCCY 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 228, 327, 1108
PspEI GGTNACC 1 cut(s) 147
PspGI CCWGG 3 cut(s) 228, 327, 1108
PspN4I GGNNCC 4 cut(s) 177, 316, 383, 1035
PspPI GGNCC 3 cut(s) 176, 823, 885
PspPPI RGGWCCY 1 cut(s) 176
PsrI GAACNNNNNNTAC 2 cut(s) 443, 475
PsyI GACNNNGTC 1 cut(s) 241
PvuI CGATCG 1 cut(s) 667
RsaI GTAC 6 cut(s) 343, 416, 452, 467, 617, 1196
RsaNI GTAC 6 cut(s) 342, 415, 451, 466, 616, 1195
SaqAI TTAA 2 cut(s) 356, 1053
SatI GCNGC 8 cut(s) 477, 504, 624, 728, 731, 734, 737, 941
Sau3AI GATC 4 cut(s) 300, 367, 664, 1186
Sau96I GGNCC 3 cut(s) 176, 823, 885
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 5 cut(s) 153, 230, 329, 620, 1110
SduI GDGCHC 2 cut(s) 594, 1171
SfaNI GCATC 3 cut(s) 13, 37, 714
SfuI TTCGAA 1 cut(s) 1150
SinI GGWCC 2 cut(s) 176, 885
Sse9I AATT 2 cut(s) 28, 113
SspI AATATT 1 cut(s) 1161
SspMI CTAG 2 cut(s) 987, 1023
StyD4I CCNGG 5 cut(s) 151, 228, 327, 618, 1108
TaaI ACNGT 2 cut(s) 414, 445
TaiI ACGT 1 cut(s) 614
TaqI TCGA 6 cut(s) 42, 216, 299, 519, 814, 1150
TaqII GACCGA 1 cut(s) 902
TasI AATT 2 cut(s) 28, 113
TauI GCSGC 8 cut(s) 479, 506, 626, 730, 733, 736, 739, 943
TfiI GAWTC 6 cut(s) 218, 259, 296, 347, 1078, 1147
Tru1I TTAA 2 cut(s) 356, 1053
Tru9I TTAA 2 cut(s) 356, 1053
TscAI CASTG 2 cut(s) 448, 1196
TseFI GTSAC 1 cut(s) 982
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 4 cut(s) 146, 364, 638, 1101
TspGWI ACGGA 2 cut(s) 237, 359
TspRI CASTG 2 cut(s) 448, 1196
Tth111I GACNNNGTC 1 cut(s) 241
Van91I CCANNNNNTGG 2 cut(s) 392, 1163
VneI GTGCAC 1 cut(s) 590
VpaK11BI GGWCC 2 cut(s) 176, 885
XapI RAATTY 2 cut(s) 28, 113
XceI RCATGY 2 cut(s) 8, 809
XmnI GAANNNNTTC 1 cut(s) 1146
XspI CTAG 2 cut(s) 987, 1023
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.