Rroxscaffold_1G00036510

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017630
Physical Location & Seq
Forward (+)
53262220 .. 53263452
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036510.1

Sequence Viewer

Length: 1233 bp
ATGACGGAAAACCAACTACCGGAAGACATCATAGTCTCCGACATCCTGGTCAAACTCCCCATAAAATCCTTAATCCGCTGCACTTGCGTCTCAAAACGGTGGCGTTTCATAATCTCCGACCCCGAATTCGCCAAATCTCACTTCCAACTAGCTCGCCGCCACCACACCTTGACCCGCCGCCTCCTCCTCTACTGCTCCCCCTCCCAAGTCGAATCCCTTGACTTGGAAACGACGCCGTCTCCGTCTTCTCCGATTCGCAACCTCACCTGTAAACTGAACAACCAACCCCAATCGATCAAGCTCCTCGGCTCCTGCAACGGCCTGGTATGCGTCTGTACGGATCCTACTCTGAGCAGTTGTGATCTCTTCATCTGGAACCCATCAACTGGGTTCTTGCGTAATCTACCGTACCCGTGTTTCTCCTCGGCGACTCACACTGTTCTGTACGGCGGGTTCGGGTACTTGTCGGCGACGGACGACTACAAGGTCGTGGTGGCGGCGGACAATGTGTTTGACTACGGCGACAATGTGGTGGAGGTGAAGGTGTTGTCGTGGAGAACAGGGGTTTGGAGAAAGATTGAAGTGCACCCTTTGTTGTCTTACACGTTGTACCCGGCGGCGGTTGTGGTGGGGGAGACGCTTCATTGGTTTCGGAACGATCGTTGGTTAGGGTCGGCGATTATTGGTTTTGATTTGGACAAGGAGGAGTTTAGGGAGATGCCGCCGCCGCCGCCGGGTTTTTGGCAGAGATATGATAGAGATTATGTTGGGTGTGTGGGTTGTTGGGGAGGAAGGCTACATGTGTTTCGATATACGGCTCGTGTTTGTGATGTTATGGAGTTATGGGTTAGGGGTGAGAATGGTGATGGTGAGTCGTGGACCGAGGTGTTCAAGTTGAAAATAGCCGATGAGCCTCGGAAGGCTGTGTTTCTGCGGCCGTTTTTGGCTGTGGGAAGTAGTGCAGTAGTGGCGAAAGTGACTAGGAACGCGACGATGGAGATGGTGAGGATTGAACCTAGAGATGAGGAACCGGTTGTAGACATGTTTAAGAGGGGGGTTGAACCTGCAATGATTCTATATGAAGAGAGCCTGCACCGGCTTCCTGGTTGTGGTGCGGTGGAAGAGATTCAAACCCCAATATTTGGTGCTCTGTTCTGGATTACTGATCACTGGTACTCTATTCTGGCTTTGGTTGGTTTTCTTATTTCTCTGTGCTATATACCTGTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

410

Amino Acids

46.61

Weight (kDa)

6.17

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 47 1.9e-07 F-box-like
F-box PF00646 5 - 43 1.5e-07 F-box domain
FBA_3 PF08268 78 - 295 1.2e-13 F-box associated beta propeller domain
FBA_1 PF07734 81 - 307 6.1e-20 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 91 - 234 6e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24880
rosa_chinensis RchiOBHm_Chr5g0044501
rosa_laevigata RLG00000034276
rosa_multiflora Rmu_co8185722.1_g000001 Rmu_sc0011598.1_g000002 Rmu_ssc0000151.1_g000013
rosa_roxburghii Rroxscaffold_1G00036510
rosa_rugosa Rorug05G0214600
rosa_samantha Rh5BG306300 Rh5CG333200 Rh5DG315600
rosa_wichuraiana Rw5G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 32, 47, 485
Acc36I ACCTGC 1 cut(s) 1072
AccB7I CCANNNNNTGG 2 cut(s) 386, 1142
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 1 cut(s) 989
AclWI GGATC 2 cut(s) 335, 348
AcoI YGGCCR 1 cut(s) 935
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 6 cut(s) 337, 410, 446, 461, 611, 1175
AfiI CCNNNNNNNGG 7 cut(s) 19, 223, 386, 619, 734, 1109, 1142
AflIII ACRYGT 3 cut(s) 603, 799, 1041
AgeI ACCGGT 1 cut(s) 1030
AgsI TTSAA 6 cut(s) 581, 892, 898, 1013, 1061, 1130
AjnI CCWGG 3 cut(s) 45, 321, 1102
AjuI GAANNNNNNNTTGG 4 cut(s) 125, 157, 550, 582
AluBI AGCT 2 cut(s) 152, 301
AluI AGCT 2 cut(s) 152, 301
Alw21I GWGCWC 2 cut(s) 588, 1150
Alw26I GTCTC 4 cut(s) 40, 94, 243, 629
Alw44I GTGCAC 1 cut(s) 584
AlwI GGATC 2 cut(s) 335, 348
AoxI GGCC 2 cut(s) 319, 935
ApaLI GTGCAC 1 cut(s) 584
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 4 cut(s) 110, 142, 494, 526
AsiGI ACCGGT 1 cut(s) 1030
Asp700I GAANNNNTTC 1 cut(s) 1125
AspS9I GGNCC 1 cut(s) 879
AsuC2I CCSGG 2 cut(s) 614, 735
AsuHPI GGTGA 6 cut(s) 256, 550, 866, 875, 881, 1015
AvaII GGWCC 1 cut(s) 879
BaeGI GKGCMC 1 cut(s) 588
BamHI GGATCC 1 cut(s) 340
BauI CACGAG 1 cut(s) 819
BbsI GAAGAC 2 cut(s) 30, 237
Bbv12I GWGCWC 2 cut(s) 588, 1150
BbvI GCAGC 1 cut(s) 65
BccI CCATC 4 cut(s) 388, 860, 988, 994
BceAI ACGGC 6 cut(s) 220, 334, 463, 535, 831, 922
BciT130I CCWGG 3 cut(s) 47, 323, 1104
BclI TGATCA 1 cut(s) 1165
BcnI CCSGG 2 cut(s) 614, 735
BcoDI GTCTC 4 cut(s) 40, 94, 243, 629
BfaI CTAG 3 cut(s) 149, 981, 1017
BfuAI ACCTGC 1 cut(s) 1072
Bme1390I CCNGG 5 cut(s) 47, 323, 614, 735, 1104
Bme18I GGWCC 1 cut(s) 879
BmgT120I GGNCC 1 cut(s) 879
BmiI GGNNCC 4 cut(s) 310, 342, 377, 1029
BmrFI CCNGG 5 cut(s) 47, 323, 614, 735, 1104
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 708
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 2 cut(s) 30, 237
BpuMI CCSGG 2 cut(s) 614, 735
Bsa29I ATCGAT 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 304, 423, 882, 914
BsaWI WCCGGW 2 cut(s) 19, 1030
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 7 cut(s) 19, 223, 386, 619, 734, 1109, 1142
Bse118I RCCGGY 2 cut(s) 1030, 1095
Bse1I ACTGG 2 cut(s) 391, 1175
Bse3DI GCAATG 1 cut(s) 1074
BseBI CCWGG 3 cut(s) 47, 323, 1104
BseCI ATCGAT 1 cut(s) 293
BseDI CCNNGG 4 cut(s) 304, 423, 882, 914
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 7 cut(s) 19, 223, 386, 619, 734, 1109, 1142
BseMI GCAATG 1 cut(s) 1074
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 391, 1175
BseRI GAGGAG 5 cut(s) 173, 176, 293, 412, 719
BseSI GKGCMC 1 cut(s) 588
BseX3I CGGCCG 1 cut(s) 935
BseXI GCAGC 1 cut(s) 65
BsgI GTGCAG 3 cut(s) 64, 981, 1076
Bsh1236I CGCG 1 cut(s) 989
Bsh1285I CGRYCG 2 cut(s) 661, 938
BshFI GGCC 2 cut(s) 321, 937
BshTI ACCGGT 1 cut(s) 1030
BshVI ATCGAT 1 cut(s) 293
BsiEI CGRYCG 2 cut(s) 661, 938
BsiHKAI GWGCWC 2 cut(s) 588, 1150
BsiSI CCGG 5 cut(s) 20, 614, 734, 1031, 1096
BslI CCNNNNNNNGG 7 cut(s) 19, 223, 386, 619, 734, 1109, 1142
BsmAI GTCTC 4 cut(s) 40, 94, 243, 629
BsmBI CGTCTC 3 cut(s) 94, 243, 629
BsnI GGCC 2 cut(s) 321, 937
Bsp1286I GDGCHC 2 cut(s) 588, 1150
Bsp143I GATC 5 cut(s) 294, 340, 361, 658, 1165
BspANI GGCC 2 cut(s) 321, 937
BspCNI CTCAG 1 cut(s) 342
BspDI ATCGAT 1 cut(s) 293
BspFNI CGCG 1 cut(s) 989
BspLI GGNNCC 4 cut(s) 310, 342, 377, 1029
BspMI ACCTGC 1 cut(s) 1072
BspPI GGATC 2 cut(s) 335, 348
BsrDI GCAATG 1 cut(s) 1074
BsrFI RCCGGY 2 cut(s) 1030, 1095
BsrI ACTGG 2 cut(s) 391, 1175
BssAI RCCGGY 2 cut(s) 1030, 1095
BssECI CCNNGG 4 cut(s) 304, 423, 882, 914
BssMI GATC 5 cut(s) 294, 340, 361, 658, 1165
BssNI GRCGYC 1 cut(s) 233
BssSI CACGAG 1 cut(s) 819
Bst2BI CACGAG 1 cut(s) 819
Bst2UI CCWGG 3 cut(s) 47, 323, 1104
Bst4CI ACNGT 3 cut(s) 99, 408, 439
Bst6I CTCTTC 3 cut(s) 371, 1077, 1116
BstACI GRCGYC 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 154, 1091
BstDEI CTNAG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 989
BstKTI GATC 5 cut(s) 297, 343, 364, 661, 1168
BstMAI GTCTC 4 cut(s) 40, 94, 243, 629
BstMBI GATC 5 cut(s) 294, 340, 361, 658, 1165
BstMCI CGRYCG 2 cut(s) 661, 938
BstMWI GCNNNNNNNGC 5 cut(s) 84, 327, 727, 730, 968
BstNI CCWGG 3 cut(s) 47, 323, 1104
BstNSI RCATGY 2 cut(s) 803, 1045
BstSCI CCNGG 5 cut(s) 45, 321, 612, 733, 1102
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 1 cut(s) 989
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 2 cut(s) 30, 237
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BstZI CGGCCG 1 cut(s) 935
Bsu15I ATCGAT 1 cut(s) 293
BsuRI GGCC 2 cut(s) 321, 937
BsuTUI ATCGAT 1 cut(s) 293
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 435, 1168
BveI ACCTGC 1 cut(s) 1072
Cac8I GCNNGC 2 cut(s) 154, 1091
Cfr10I RCCGGY 2 cut(s) 1030, 1095
Cfr13I GGNCC 1 cut(s) 879
ClaI ATCGAT 1 cut(s) 293
CseI GACGC 4 cut(s) 76, 241, 319, 646
Csp6I GTAC 6 cut(s) 336, 409, 445, 460, 610, 1174
CspAI ACCGGT 1 cut(s) 1030
CviAII CATG 2 cut(s) 800, 1042
CviQI GTAC 6 cut(s) 336, 409, 445, 460, 610, 1174
DdeI CTNAG 1 cut(s) 350
DpnI GATC 5 cut(s) 296, 342, 363, 660, 1167
DpnII GATC 5 cut(s) 294, 340, 361, 658, 1165
DrdI GACNNNNNNGTC 3 cut(s) 32, 47, 485
DseDI GACNNNNNNGTC 3 cut(s) 32, 47, 485
EaeI YGGCCR 1 cut(s) 935
EagI CGGCCG 1 cut(s) 935
Eam1104I CTCTTC 3 cut(s) 371, 1077, 1116
EarI CTCTTC 3 cut(s) 371, 1077, 1116
EciI GGCGGA 1 cut(s) 515
EclXI CGGCCG 1 cut(s) 935
Eco47I GGWCC 1 cut(s) 879
Eco52I CGGCCG 1 cut(s) 935
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 45, 321, 1102
Esp3I CGTCTC 3 cut(s) 94, 243, 629
FaeI CATG 2 cut(s) 803, 1045
FatI CATG 2 cut(s) 799, 1041
FauI CCCGC 2 cut(s) 182, 443
FbaI TGATCA 1 cut(s) 1165
FblI GTMKAC 1 cut(s) 1038
FokI GGATG 1 cut(s) 29
FspBI CTAG 3 cut(s) 149, 981, 1017
HaeIII GGCC 2 cut(s) 321, 937
HapII CCGG 5 cut(s) 20, 614, 734, 1031, 1096
HgaI GACGC 4 cut(s) 76, 241, 319, 646
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 2 cut(s) 803, 1045
HinfI GANTC 6 cut(s) 212, 253, 430, 872, 1072, 1126
HpaII CCGG 5 cut(s) 20, 614, 734, 1031, 1096
HphI GGTGA 6 cut(s) 256, 550, 866, 875, 881, 1015
Hpy166II GTNNAC 4 cut(s) 272, 586, 879, 1039
Hpy188I TCNGA 6 cut(s) 40, 118, 252, 351, 654, 918
Hpy188III TCNNGA 2 cut(s) 373, 1156
Hpy8I GTNNAC 4 cut(s) 272, 586, 879, 1039
Hpy99I CGWCG 3 cut(s) 235, 475, 994
HpyAV CCTTC 3 cut(s) 535, 786, 913
HpyCH4III ACNGT 3 cut(s) 99, 408, 439
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 6 cut(s) 81, 315, 586, 962, 1067, 1093
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 327, 727, 730, 968
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 605
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 2 cut(s) 803, 1045
Ksp22I TGATCA 1 cut(s) 1165
Kzo9I GATC 5 cut(s) 294, 340, 361, 658, 1165
LmnI GCTCC 3 cut(s) 200, 306, 314
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 708
MaeI CTAG 3 cut(s) 149, 981, 1017
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 976
MalI GATC 5 cut(s) 296, 342, 363, 660, 1167
MboI GATC 5 cut(s) 294, 340, 361, 658, 1165
MboII GAAGA 5 cut(s) 35, 237, 358, 1094, 1133
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 588, 1150
MluCI AATT 1 cut(s) 125
MlyI GAGTC 2 cut(s) 424, 881
MmeI TCCRAC 3 cut(s) 63, 141, 169
MroXI GAANNNNTTC 1 cut(s) 1125
MseI TTAA 2 cut(s) 71, 1047
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 5 cut(s) 20, 614, 734, 1031, 1096
MspR9I CCNGG 5 cut(s) 47, 323, 614, 735, 1104
MvaI CCWGG 3 cut(s) 47, 323, 1104
MvnI CGCG 1 cut(s) 989
MwoI GCNNNNNNNGC 5 cut(s) 84, 327, 727, 730, 968
NciI CCSGG 2 cut(s) 614, 735
NdeII GATC 5 cut(s) 294, 340, 361, 658, 1165
NlaIII CATG 2 cut(s) 803, 1045
NlaIV GGNNCC 4 cut(s) 310, 342, 377, 1029
NmeAIII GCCGAG 2 cut(s) 285, 404
NmuCI GTSAC 1 cut(s) 976
NspI RCATGY 2 cut(s) 803, 1045
PciI ACATGT 2 cut(s) 799, 1041
PcsI WCGNNNNNNNCGW 2 cut(s) 239, 658
PdmI GAANNNNTTC 1 cut(s) 1125
PfeI GAWTC 4 cut(s) 212, 253, 1072, 1126
PflFI GACNNNGTC 1 cut(s) 235
PflMI CCANNNNNTGG 2 cut(s) 386, 1142
PinAI ACCGGT 1 cut(s) 1030
Ple19I CGATCG 1 cut(s) 661
PleI GAGTC 2 cut(s) 424, 880
PpsI GAGTC 2 cut(s) 424, 880
PscI ACATGT 2 cut(s) 799, 1041
Psp6I CCWGG 3 cut(s) 45, 321, 1102
PspGI CCWGG 3 cut(s) 45, 321, 1102
PspN4I GGNNCC 4 cut(s) 310, 342, 377, 1029
PspPI GGNCC 1 cut(s) 879
PsrI GAACNNNNNNTAC 2 cut(s) 437, 469
PsuI RGATCY 1 cut(s) 340
PsyI GACNNNGTC 1 cut(s) 235
PvuI CGATCG 1 cut(s) 661
RsaI GTAC 6 cut(s) 337, 410, 446, 461, 611, 1175
RsaNI GTAC 6 cut(s) 336, 409, 445, 460, 610, 1174
SaqAI TTAA 2 cut(s) 71, 1047
Sau3AI GATC 5 cut(s) 294, 340, 361, 658, 1165
Sau96I GGNCC 1 cut(s) 879
SchI GAGTC 2 cut(s) 424, 881
ScrFI CCNGG 5 cut(s) 47, 323, 614, 735, 1104
SduI GDGCHC 2 cut(s) 588, 1150
SfaNI GCATC 1 cut(s) 708
SinI GGWCC 1 cut(s) 879
Sse9I AATT 1 cut(s) 125
SspI AATATT 1 cut(s) 1140
SspMI CTAG 3 cut(s) 149, 981, 1017
StyD4I CCNGG 5 cut(s) 45, 321, 612, 733, 1102
TaaI ACNGT 3 cut(s) 99, 408, 439
TaiI ACGT 1 cut(s) 608
TaqI TCGA 3 cut(s) 210, 293, 808
TaqII GACCGA 1 cut(s) 896
TasI AATT 1 cut(s) 125
TauI GCSGC 9 cut(s) 159, 180, 500, 620, 724, 727, 730, 733, 937
TfiI GAWTC 4 cut(s) 212, 253, 1072, 1126
Tru1I TTAA 2 cut(s) 71, 1047
Tru9I TTAA 2 cut(s) 71, 1047
TscAI CASTG 2 cut(s) 442, 1175
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 4 cut(s) 97, 358, 632, 1095
TspGWI ACGGA 4 cut(s) 20, 231, 353, 488
TspRI CASTG 2 cut(s) 442, 1175
Tth111I GACNNNGTC 1 cut(s) 235
Van91I CCANNNNNTGG 2 cut(s) 386, 1142
VneI GTGCAC 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 879
XapI RAATTY 1 cut(s) 125
XceI RCATGY 2 cut(s) 803, 1045
XmiI GTMKAC 1 cut(s) 1038
XmnI GAANNNNTTC 1 cut(s) 1125
XspI CTAG 3 cut(s) 149, 981, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.