Rmu_co8185722.1_g000001

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8185722.1
OG0017630
Physical Location & Seq
Forward (+)
1 .. 692
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8185722.1_g000001.1.cds

Sequence Viewer

Length: 692 bp
aaactgaacaaccaacccgaatcgatcaagctcctcggctcctgcaacggcctggtatgcgtctgtacggattctactttaagcagttgtgatcttttcatctggaacccatcaactgggttcttgcgtaatctaccgtacccaggtttttcctcggcaacacacaccgttctctacggcgggttcggttacttgtctgccacggacgactacaaggtcgtggtggcggcggacaatgtgttcgactacggcgataatgtggtggaggtgaaggtgttgtcatggagaacaggtgtttggagaaagattgaagtgcaccctttgttgtcttacacgctgtacccggcggcggttgtggtgggggagacgcttcattggtttcggaacgatcgctggttagggtcggcgattattggttttgatttggacaaggaggagtttagggagatgccgccgccgccgccgagtttttggcagagatatgatagagattatgttgggtgtgtgggttgttggggaggaaggctacatgtgtttcgatatacggctcgtgtttgcgatgttatggagttatgggttaggggtgagaatggtgatggtgagtcgtggaccgaggtgttcaagttgaaaatagccgatgagcctcggaaggctgtgtttctgcggccgtttttggctgtgggaagtagtgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

231

Amino Acids

26.08

Weight (kDa)

5.6

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24880
rosa_chinensis RchiOBHm_Chr5g0044501
rosa_laevigata RLG00000034276
rosa_multiflora Rmu_co8185722.1_g000001 Rmu_sc0011598.1_g000002 Rmu_ssc0000151.1_g000013
rosa_roxburghii Rroxscaffold_1G00036510
rosa_rugosa Rorug05G0214600
rosa_samantha Rh5BG306300 Rh5CG333200 Rh5DG315600
rosa_wichuraiana Rw5G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 665
AfaI GTAC 3 cut(s) 67, 140, 341
AfiI CCNNNNNNNGG 3 cut(s) 116, 143, 349
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 3 cut(s) 311, 622, 628
AjnI CCWGG 2 cut(s) 51, 142
AjuI GAANNNNNNNTTGG 2 cut(s) 280, 312
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 359
Alw44I GTGCAC 1 cut(s) 314
AoxI GGCC 2 cut(s) 49, 665
ApaLI GTGCAC 1 cut(s) 314
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspS9I GGNCC 1 cut(s) 609
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 4 cut(s) 280, 596, 605, 611
AvaII GGWCC 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 318
BauI CACGAG 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 2 cut(s) 118, 590
BceAI ACGGC 5 cut(s) 64, 193, 265, 561, 652
BciT130I CCWGG 2 cut(s) 53, 144
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 359
BisI GCNGC 7 cut(s) 228, 348, 452, 455, 458, 461, 665
BlsI GCNGC 7 cut(s) 229, 349, 453, 456, 459, 462, 666
Bme1390I CCNGG 3 cut(s) 53, 144, 344
Bme18I GGWCC 1 cut(s) 609
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 2 cut(s) 40, 107
BmrFI CCNGG 3 cut(s) 53, 144, 344
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 438
BmuI ACTGGG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 23
BsaJI CCNNGG 6 cut(s) 34, 142, 153, 201, 612, 644
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 143, 349
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 2 cut(s) 53, 144
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 6 cut(s) 34, 142, 153, 201, 612, 644
BseLI CCNNNNNNNGG 3 cut(s) 116, 143, 349
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 23, 449
BseSI GKGCMC 1 cut(s) 318
BseX3I CGGCCG 1 cut(s) 665
Bsh1285I CGRYCG 2 cut(s) 391, 668
BshFI GGCC 2 cut(s) 51, 667
BshVI ATCGAT 1 cut(s) 23
BsiEI CGRYCG 2 cut(s) 391, 668
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 3 cut(s) 116, 143, 349
BsmAI GTCTC 1 cut(s) 359
BsmBI CGTCTC 1 cut(s) 359
BsnI GGCC 2 cut(s) 51, 667
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 3 cut(s) 24, 91, 388
BspANI GGCC 2 cut(s) 51, 667
BspDI ATCGAT 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 40, 107
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 6 cut(s) 34, 142, 153, 201, 612, 644
BssMI GATC 3 cut(s) 24, 91, 388
BssSI CACGAG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 549
Bst2UI CCWGG 2 cut(s) 53, 144
Bst4CI ACNGT 2 cut(s) 138, 169
BstDSI CCRYGG 1 cut(s) 201
BstKTI GATC 3 cut(s) 27, 94, 391
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 24, 91, 388
BstMCI CGRYCG 2 cut(s) 391, 668
BstMWI GCNNNNNNNGC 3 cut(s) 57, 457, 460
BstNI CCWGG 2 cut(s) 53, 144
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 3 cut(s) 51, 142, 342
BstSLI GKGCMC 1 cut(s) 318
BstZI CGGCCG 1 cut(s) 665
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 2 cut(s) 51, 667
BsuTUI ATCGAT 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 573
Cfr13I GGNCC 1 cut(s) 609
ClaI ATCGAT 1 cut(s) 23
CseI GACGC 2 cut(s) 49, 376
Csp6I GTAC 3 cut(s) 66, 139, 340
CviAII CATG 2 cut(s) 282, 530
CviQI GTAC 3 cut(s) 66, 139, 340
DpnI GATC 3 cut(s) 26, 93, 390
DpnII GATC 3 cut(s) 24, 91, 388
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 665
EagI CGGCCG 1 cut(s) 665
EciI GGCGGA 1 cut(s) 245
EclXI CGGCCG 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 609
Eco52I CGGCCG 1 cut(s) 665
EcoRII CCWGG 2 cut(s) 51, 142
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 2 cut(s) 285, 533
FaiI YATR 8 cut(s) 58, 283, 483, 495, 531, 543, 566, 574
FatI CATG 2 cut(s) 281, 529
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 7 cut(s) 228, 348, 452, 455, 458, 461, 665
Fsp4HI GCNGC 7 cut(s) 228, 348, 452, 455, 458, 461, 665
GluI GCNGC 7 cut(s) 228, 348, 452, 455, 458, 461, 665
HaeIII GGCC 2 cut(s) 51, 667
HapII CCGG 1 cut(s) 344
HgaI GACGC 2 cut(s) 49, 376
Hin1II CATG 2 cut(s) 285, 533
HinfI GANTC 3 cut(s) 20, 71, 602
HpaII CCGG 1 cut(s) 344
HphI GGTGA 4 cut(s) 280, 596, 605, 611
Hpy166II GTNNAC 2 cut(s) 316, 609
Hpy188I TCNGA 2 cut(s) 384, 648
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 316, 609
HpyAV CCTTC 3 cut(s) 265, 516, 643
HpyCH4III ACNGT 2 cut(s) 138, 169
HpyCH4V TGCA 2 cut(s) 45, 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 457, 460
Hsp92II CATG 2 cut(s) 285, 533
Kzo9I GATC 3 cut(s) 24, 91, 388
LmnI GCTCC 2 cut(s) 36, 44
LweI GCATC 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 188
MalI GATC 3 cut(s) 26, 93, 390
MboI GATC 3 cut(s) 24, 91, 388
MhlI GDGCHC 1 cut(s) 318
MlyI GAGTC 1 cut(s) 611
MnlI CCTC 7 cut(s) 44, 163, 259, 427, 512, 607, 654
MseI TTAA 1 cut(s) 80
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 3 cut(s) 53, 144, 344
MvaI CCWGG 2 cut(s) 53, 144
MwoI GCNNNNNNNGC 3 cut(s) 57, 457, 460
NciI CCSGG 1 cut(s) 344
NdeII GATC 3 cut(s) 24, 91, 388
NlaIII CATG 2 cut(s) 285, 533
NlaIV GGNNCC 2 cut(s) 40, 107
NmeAIII GCCGAG 3 cut(s) 15, 134, 489
NspI RCATGY 1 cut(s) 533
PciI ACATGT 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 2 cut(s) 20, 71
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 7 cut(s) 229, 349, 453, 456, 459, 462, 666
Ple19I CGATCG 1 cut(s) 391
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PscI ACATGT 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 51, 142
PspGI CCWGG 2 cut(s) 51, 142
PspN4I GGNNCC 2 cut(s) 40, 107
PspPI GGNCC 1 cut(s) 609
PvuI CGATCG 1 cut(s) 391
RsaI GTAC 3 cut(s) 67, 140, 341
RsaNI GTAC 3 cut(s) 66, 139, 340
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 7 cut(s) 228, 348, 452, 455, 458, 461, 665
Sau3AI GATC 3 cut(s) 24, 91, 388
Sau96I GGNCC 1 cut(s) 609
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 3 cut(s) 53, 144, 344
SduI GDGCHC 1 cut(s) 318
SetI ASST 7 cut(s) 33, 148, 219, 270, 276, 295, 618
SfaNI GCATC 1 cut(s) 438
SinI GGWCC 1 cut(s) 609
StyD4I CCNGG 3 cut(s) 51, 142, 342
TaaI ACNGT 2 cut(s) 138, 169
TaqI TCGA 3 cut(s) 23, 243, 538
TaqII GACCGA 1 cut(s) 626
TauI GCSGC 7 cut(s) 230, 350, 454, 457, 460, 463, 667
TfiI GAWTC 2 cut(s) 20, 71
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 88, 362
TspGWI ACGGA 2 cut(s) 83, 218
Van91I CCANNNNNTGG 1 cut(s) 116
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 609
XceI RCATGY 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.