Rmu_sc0011598.1_g000002

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011598.1
OG0017630
Physical Location & Seq
Reverse (-)
2700 .. 3947
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011598.1_g000002.1.cds

Sequence Viewer

Length: 1248 bp
atgacggaaaaccaactaccggaagacatcatagtctccgacatcctggtcaaactccccatcaaatccttaatccgctgcacttgcgtctcgaaacggtggcgtttccttatctccgaccctgaattcgccaaatctcacttccaactagctcgccgccaccacaccttgacccgccgcctcctcctctactgctccccctcccaagtcgaatcccttgacttggaaacgacgccgtcttcgtcttctccgatccgcaacctcacctgtaaactgaacaaccaacccgaatcgatcaagctcctcggctcctgcaacggcctggtatgcgtctgtacggattctactttaagcagttgtgatcttttcatctggaacccatcaactgggttcttgcgtaatctaccgtacccaggtttttcctcggcaacacacaccgttctctacggcgggttcggttacttgtctgccacggacgactacaaggtcgtggtggcggcggacaatgtgttcgactacggcgataatgtggtggaggtgaaggtgttgtcatggagaacaggtgtttggagaaagattgaagtgcaccctttgttgtcttacacgctgtacccggcggcggttgtggtgggggagacgcttcattggtttcggaacgatcgctggttagggtcggcgattattggttttgatttggacaaggaggagtttagggagatgccgccgccgccgccgagtttttggcagagatatgatagagattatgttgggtgtgtgggttgttggggaggaaggctacatgtgtttcgatatacggctcgtgtttgcgatgttatggagttatgggttaggggtgagaatggtgatggtgagtcgtggaccgaggtgttcaagttgaaaatagccgatgagcctcggaaggctgtgtttctgcggccgtttttggctgtgggaagtagtgcagttgtggcgaaagtgactaggaacgcgacgatggagatggtcaggattgaacctagagatgaggaaccggttgtggatatgtttaagaggggggttgaaccggcaatgattctatatgaagagagcctgcaccggcttcctggttgtggtgtggtggaagaagagaaggtggaagagattcaaaccccaatatttggtgctctattctggattactgatcactggtactctattctggctttggttggttttcttatttctctgttctgtatacctgtaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

415

Amino Acids

47.2

Weight (kDa)

5.8

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24880
rosa_chinensis RchiOBHm_Chr5g0044501
rosa_laevigata RLG00000034276
rosa_multiflora Rmu_co8185722.1_g000001 Rmu_sc0011598.1_g000002 Rmu_ssc0000151.1_g000013
rosa_roxburghii Rroxscaffold_1G00036510
rosa_rugosa Rorug05G0214600
rosa_samantha Rh5BG306300 Rh5CG333200 Rh5DG315600
rosa_wichuraiana Rw5G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 32, 47, 485
AccB7I CCANNNNNTGG 2 cut(s) 386, 1157
AccI GTMKAC 1 cut(s) 1234
AccII CGCG 1 cut(s) 989
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 935
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 4 cut(s) 337, 410, 611, 1190
AfiI CCNNNNNNNGG 7 cut(s) 19, 223, 386, 413, 619, 1109, 1157
AflIII ACRYGT 1 cut(s) 799
AgeI ACCGGT 1 cut(s) 1030
AgsI TTSAA 6 cut(s) 581, 892, 898, 1013, 1061, 1145
AjnI CCWGG 4 cut(s) 45, 321, 412, 1102
AjuI GAANNNNNNNTTGG 4 cut(s) 125, 157, 550, 582
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
AluBI AGCT 2 cut(s) 152, 301
AluI AGCT 2 cut(s) 152, 301
Alw21I GWGCWC 2 cut(s) 588, 1165
Alw26I GTCTC 3 cut(s) 40, 94, 629
Alw44I GTGCAC 1 cut(s) 584
AlwI GGATC 1 cut(s) 247
AoxI GGCC 2 cut(s) 319, 935
ApaLI GTGCAC 1 cut(s) 584
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 6 cut(s) 110, 142, 223, 255, 494, 526
AsiGI ACCGGT 1 cut(s) 1030
Asp700I GAANNNNTTC 1 cut(s) 1140
AspS9I GGNCC 1 cut(s) 879
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 5 cut(s) 256, 550, 866, 875, 881
AvaII GGWCC 1 cut(s) 879
BaeGI GKGCMC 1 cut(s) 588
BauI CACGAG 1 cut(s) 819
BbsI GAAGAC 3 cut(s) 30, 231, 237
Bbv12I GWGCWC 2 cut(s) 588, 1165
BbvI GCAGC 1 cut(s) 65
BccI CCATC 5 cut(s) 68, 388, 860, 988, 994
BceAI ACGGC 6 cut(s) 220, 334, 463, 535, 831, 922
BciT130I CCWGG 4 cut(s) 47, 323, 414, 1104
BclI TGATCA 1 cut(s) 1180
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 3 cut(s) 40, 94, 629
BfaI CTAG 3 cut(s) 149, 981, 1017
Bme1390I CCNGG 5 cut(s) 47, 323, 414, 614, 1104
Bme18I GGWCC 1 cut(s) 879
BmgT120I GGNCC 1 cut(s) 879
BmiI GGNNCC 3 cut(s) 310, 377, 1029
BmrFI CCNGG 5 cut(s) 47, 323, 414, 614, 1104
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 708
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 3 cut(s) 30, 231, 237
BpuMI CCSGG 1 cut(s) 614
Bsa29I ATCGAT 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 6 cut(s) 304, 412, 423, 471, 882, 914
BsaWI WCCGGW 2 cut(s) 19, 1030
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 7 cut(s) 19, 223, 386, 413, 619, 1109, 1157
Bse118I RCCGGY 3 cut(s) 1030, 1063, 1095
Bse1I ACTGG 2 cut(s) 391, 1190
Bse3DI GCAATG 1 cut(s) 1074
BseBI CCWGG 4 cut(s) 47, 323, 414, 1104
BseCI ATCGAT 1 cut(s) 293
BseDI CCNNGG 6 cut(s) 304, 412, 423, 471, 882, 914
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 7 cut(s) 19, 223, 386, 413, 619, 1109, 1157
BseMI GCAATG 1 cut(s) 1074
BseNI ACTGG 2 cut(s) 391, 1190
BseRI GAGGAG 4 cut(s) 173, 176, 293, 719
BseSI GKGCMC 1 cut(s) 588
BseX3I CGGCCG 1 cut(s) 935
BseXI GCAGC 1 cut(s) 65
BsgI GTGCAG 3 cut(s) 64, 981, 1076
Bsh1236I CGCG 1 cut(s) 989
Bsh1285I CGRYCG 2 cut(s) 661, 938
BshFI GGCC 2 cut(s) 321, 937
BshTI ACCGGT 1 cut(s) 1030
BshVI ATCGAT 1 cut(s) 293
BsiEI CGRYCG 2 cut(s) 661, 938
BsiHKAI GWGCWC 2 cut(s) 588, 1165
BsiSI CCGG 5 cut(s) 20, 614, 1031, 1064, 1096
BslI CCNNNNNNNGG 7 cut(s) 19, 223, 386, 413, 619, 1109, 1157
BsmAI GTCTC 3 cut(s) 40, 94, 629
BsmBI CGTCTC 2 cut(s) 94, 629
BsnI GGCC 2 cut(s) 321, 937
Bsp1286I GDGCHC 2 cut(s) 588, 1165
Bsp143I GATC 5 cut(s) 252, 294, 361, 658, 1180
BspANI GGCC 2 cut(s) 321, 937
BspDI ATCGAT 1 cut(s) 293
BspFNI CGCG 1 cut(s) 989
BspLI GGNNCC 3 cut(s) 310, 377, 1029
BspPI GGATC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 1074
BsrFI RCCGGY 3 cut(s) 1030, 1063, 1095
BsrI ACTGG 2 cut(s) 391, 1190
BssAI RCCGGY 3 cut(s) 1030, 1063, 1095
BssECI CCNNGG 6 cut(s) 304, 412, 423, 471, 882, 914
BssMI GATC 5 cut(s) 252, 294, 361, 658, 1180
BssNAI GTATAC 1 cut(s) 1235
BssNI GRCGYC 1 cut(s) 233
BssSI CACGAG 1 cut(s) 819
Bst1107I GTATAC 1 cut(s) 1235
Bst2BI CACGAG 1 cut(s) 819
Bst2UI CCWGG 4 cut(s) 47, 323, 414, 1104
Bst4CI ACNGT 3 cut(s) 99, 408, 439
Bst6I CTCTTC 3 cut(s) 1077, 1119, 1131
BstACI GRCGYC 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 154, 1091
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 989
BstKTI GATC 5 cut(s) 255, 297, 364, 661, 1183
BstMAI GTCTC 3 cut(s) 40, 94, 629
BstMBI GATC 5 cut(s) 252, 294, 361, 658, 1180
BstMCI CGRYCG 2 cut(s) 661, 938
BstMWI GCNNNNNNNGC 5 cut(s) 84, 327, 727, 730, 968
BstNI CCWGG 4 cut(s) 47, 323, 414, 1104
BstNSI RCATGY 1 cut(s) 803
BstSCI CCNGG 5 cut(s) 45, 321, 412, 612, 1102
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 1 cut(s) 989
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 3 cut(s) 30, 231, 237
BstZ17I GTATAC 1 cut(s) 1235
BstZI CGGCCG 1 cut(s) 935
Bsu15I ATCGAT 1 cut(s) 293
BsuRI GGCC 2 cut(s) 321, 937
BsuTUI ATCGAT 1 cut(s) 293
BtgI CCRYGG 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 843
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 1183
Cac8I GCNNGC 2 cut(s) 154, 1091
Cfr10I RCCGGY 3 cut(s) 1030, 1063, 1095
Cfr13I GGNCC 1 cut(s) 879
ClaI ATCGAT 1 cut(s) 293
CseI GACGC 4 cut(s) 76, 241, 319, 646
Csp6I GTAC 4 cut(s) 336, 409, 610, 1189
CspAI ACCGGT 1 cut(s) 1030
CviAII CATG 2 cut(s) 552, 800
CviQI GTAC 4 cut(s) 336, 409, 610, 1189
DpnI GATC 5 cut(s) 254, 296, 363, 660, 1182
DpnII GATC 5 cut(s) 252, 294, 361, 658, 1180
DrdI GACNNNNNNGTC 3 cut(s) 32, 47, 485
DseDI GACNNNNNNGTC 3 cut(s) 32, 47, 485
EaeI YGGCCR 1 cut(s) 935
EagI CGGCCG 1 cut(s) 935
Eam1104I CTCTTC 3 cut(s) 1077, 1119, 1131
EarI CTCTTC 3 cut(s) 1077, 1119, 1131
EciI GGCGGA 1 cut(s) 515
EclXI CGGCCG 1 cut(s) 935
Eco47I GGWCC 1 cut(s) 879
Eco52I CGGCCG 1 cut(s) 935
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 4 cut(s) 45, 321, 412, 1102
Esp3I CGTCTC 2 cut(s) 94, 629
FaeI CATG 2 cut(s) 555, 803
FatI CATG 2 cut(s) 551, 799
FauI CCCGC 2 cut(s) 182, 443
FbaI TGATCA 1 cut(s) 1180
FblI GTMKAC 1 cut(s) 1234
FokI GGATG 1 cut(s) 29
FspBI CTAG 3 cut(s) 149, 981, 1017
HaeIII GGCC 2 cut(s) 321, 937
HapII CCGG 5 cut(s) 20, 614, 1031, 1064, 1096
HgaI GACGC 4 cut(s) 76, 241, 319, 646
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 2 cut(s) 555, 803
HinfI GANTC 6 cut(s) 212, 290, 341, 872, 1072, 1141
HpaII CCGG 5 cut(s) 20, 614, 1031, 1064, 1096
HphI GGTGA 5 cut(s) 256, 550, 866, 875, 881
Hpy166II GTNNAC 4 cut(s) 272, 586, 879, 1235
Hpy188I TCNGA 5 cut(s) 40, 118, 252, 654, 918
Hpy188III TCNNGA 4 cut(s) 91, 373, 1006, 1171
Hpy8I GTNNAC 4 cut(s) 272, 586, 879, 1235
Hpy99I CGWCG 2 cut(s) 235, 994
HpyAV CCTTC 4 cut(s) 535, 786, 913, 1123
HpyCH4III ACNGT 3 cut(s) 99, 408, 439
HpyCH4V TGCA 5 cut(s) 81, 315, 586, 962, 1093
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 327, 727, 730, 968
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 2 cut(s) 555, 803
Ksp22I TGATCA 1 cut(s) 1180
Kzo9I GATC 5 cut(s) 252, 294, 361, 658, 1180
LmnI GCTCC 3 cut(s) 200, 306, 314
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 708
MaeI CTAG 3 cut(s) 149, 981, 1017
MaeIII GTNAC 2 cut(s) 458, 976
MalI GATC 5 cut(s) 254, 296, 363, 660, 1182
MboI GATC 5 cut(s) 252, 294, 361, 658, 1180
MboII GAAGA 7 cut(s) 35, 231, 237, 1094, 1133, 1136, 1148
MhlI GDGCHC 2 cut(s) 588, 1165
MluCI AATT 1 cut(s) 125
MlyI GAGTC 1 cut(s) 881
MmeI TCCRAC 3 cut(s) 63, 141, 169
MroXI GAANNNNTTC 1 cut(s) 1140
MseI TTAA 3 cut(s) 71, 350, 1047
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 5 cut(s) 20, 614, 1031, 1064, 1096
MspR9I CCNGG 5 cut(s) 47, 323, 414, 614, 1104
MvaI CCWGG 4 cut(s) 47, 323, 414, 1104
MvnI CGCG 1 cut(s) 989
MwoI GCNNNNNNNGC 5 cut(s) 84, 327, 727, 730, 968
NciI CCSGG 1 cut(s) 614
NdeII GATC 5 cut(s) 252, 294, 361, 658, 1180
NlaIII CATG 2 cut(s) 555, 803
NlaIV GGNNCC 3 cut(s) 310, 377, 1029
NmeAIII GCCGAG 3 cut(s) 285, 404, 759
NmuCI GTSAC 1 cut(s) 976
NspI RCATGY 1 cut(s) 803
PciI ACATGT 1 cut(s) 799
PcsI WCGNNNNNNNCGW 3 cut(s) 239, 248, 519
PdmI GAANNNNTTC 1 cut(s) 1140
PfeI GAWTC 5 cut(s) 212, 290, 341, 1072, 1141
PflFI GACNNNGTC 1 cut(s) 235
PflMI CCANNNNNTGG 2 cut(s) 386, 1157
PinAI ACCGGT 1 cut(s) 1030
Ple19I CGATCG 1 cut(s) 661
PleI GAGTC 1 cut(s) 880
PpsI GAGTC 1 cut(s) 880
PscI ACATGT 1 cut(s) 799
Psp6I CCWGG 4 cut(s) 45, 321, 412, 1102
PspGI CCWGG 4 cut(s) 45, 321, 412, 1102
PspN4I GGNNCC 3 cut(s) 310, 377, 1029
PspPI GGNCC 1 cut(s) 879
PsyI GACNNNGTC 1 cut(s) 235
PvuI CGATCG 1 cut(s) 661
RsaI GTAC 4 cut(s) 337, 410, 611, 1190
RsaNI GTAC 4 cut(s) 336, 409, 610, 1189
SaqAI TTAA 3 cut(s) 71, 350, 1047
Sau3AI GATC 5 cut(s) 252, 294, 361, 658, 1180
Sau96I GGNCC 1 cut(s) 879
SchI GAGTC 1 cut(s) 881
ScrFI CCNGG 5 cut(s) 47, 323, 414, 614, 1104
SduI GDGCHC 2 cut(s) 588, 1165
SfaNI GCATC 1 cut(s) 708
SinI GGWCC 1 cut(s) 879
Sse9I AATT 1 cut(s) 125
SspI AATATT 1 cut(s) 1155
SspMI CTAG 3 cut(s) 149, 981, 1017
StyD4I CCNGG 5 cut(s) 45, 321, 412, 612, 1102
TaaI ACNGT 3 cut(s) 99, 408, 439
TaqI TCGA 5 cut(s) 92, 210, 293, 513, 808
TaqII GACCGA 1 cut(s) 896
TasI AATT 1 cut(s) 125
TauI GCSGC 9 cut(s) 159, 180, 500, 620, 724, 727, 730, 733, 937
TfiI GAWTC 5 cut(s) 212, 290, 341, 1072, 1141
Tru1I TTAA 3 cut(s) 71, 350, 1047
Tru9I TTAA 3 cut(s) 71, 350, 1047
TscAI CASTG 1 cut(s) 1190
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 3 cut(s) 358, 632, 1095
TspGWI ACGGA 3 cut(s) 20, 353, 488
TspRI CASTG 1 cut(s) 1190
Tth111I GACNNNGTC 1 cut(s) 235
Van91I CCANNNNNTGG 2 cut(s) 386, 1157
VneI GTGCAC 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 879
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 803
XmiI GTMKAC 1 cut(s) 1234
XmnI GAANNNNTTC 1 cut(s) 1140
XspI CTAG 3 cut(s) 149, 981, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.