Rh5CG333200

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017630
Physical Location & Seq
Reverse (-)
37638906 .. 37640353
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG333200.1

Sequence Viewer

Length: 789 bp
ATGTCGGCCACGGACGACTACAAGGTCGTGGTGGCGGCGGCGGACAATGTGTTTGAGTACGGCGATAATGTGGTGGAGGTGAAGGTGTTGTCATGGAGAACAGGGGTTTGGAGAAAGATTGAAGTGCACCCTTTGTTGTCTTATACGTTGTACCCGGCGGCGGTTGTGGTGGGGGAGACGCTTCATTGGTTTCGGAACGATCGTTGGTTAGGGTCGGCGATTATTGGTTTTGATTTGGACAAGGAGGAGTTTAGGGAGATGCCGCCGCCGCCGCCGGGTTTTTGGCAGAGATATGATAGAGATTATGTTGGGTGTGTGGGTTGTTGGGGAGGAAGGCTACATGTGTTTCGATATACGGCTCGTGTTTGTGATGTTATGGAGTTATGGGTTAGGGGTGAGAATGGTGATGGTGATTCCTGGACCGAGGTGTTCAAGTTGAAAATAGCCGATGAGCCTCGGAAGGCTGTGTTTCTGCGGCCGTTTTTGGCTGTGGGAAGTAGTGCAGTTGTGGCGAAAGTGACTAGGAACGCGACGATGGAGATGGTGAGGATTGAACCTAGTGATGAGGAACCGGTTGTAGATATGTTTAAGAGGGGGGCTGAACCTGCAATGATTCTATATGAAGAGAGCCTGCACCAGCTTCCTGGTTGTGGTGCGGTGGAAGAAGAGAAAGTGGAAGAGATTCAAACCCCAATATTTGGTGCTGTATTCTGGATTACTGATCACTGGTACTCTATTCTGGCTTTGGTTGGTTTTCTTATTTCTCTGTGCTATATACCTGTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

262

Amino Acids

29.86

Weight (kDa)

4.94

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 5 - 165 2.4e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24880
rosa_chinensis RchiOBHm_Chr5g0044501
rosa_laevigata RLG00000034276
rosa_multiflora Rmu_co8185722.1_g000001 Rmu_sc0011598.1_g000002 Rmu_ssc0000151.1_g000013
rosa_roxburghii Rroxscaffold_1G00036510
rosa_rugosa Rorug05G0214600
rosa_samantha Rh5BG306300 Rh5CG333200 Rh5DG315600
rosa_wichuraiana Rw5G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 613
AccB7I CCANNNNNTGG 1 cut(s) 698
AccII CGCG 1 cut(s) 530
AcoI YGGCCR 2 cut(s) 6, 476
AfaI GTAC 3 cut(s) 59, 152, 731
AfiI CCNNNNNNNGG 4 cut(s) 160, 275, 650, 698
AflIII ACRYGT 1 cut(s) 340
AgeI ACCGGT 1 cut(s) 571
AgsI TTSAA 5 cut(s) 122, 433, 439, 554, 686
AjnI CCWGG 2 cut(s) 416, 643
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AluBI AGCT 1 cut(s) 640
AluI AGCT 1 cut(s) 640
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 170
Alw44I GTGCAC 1 cut(s) 125
AoxI GGCC 2 cut(s) 6, 476
ApaLI GTGCAC 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AsiGI ACCGGT 1 cut(s) 571
Asp700I GAANNNNTTC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 420
AsuC2I CCSGG 2 cut(s) 155, 276
AsuHPI GGTGA 5 cut(s) 91, 407, 416, 422, 556
AvaII GGWCC 1 cut(s) 420
BaeGI GKGCMC 1 cut(s) 129
BauI CACGAG 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 3 cut(s) 401, 529, 535
BceAI ACGGC 3 cut(s) 76, 372, 463
BciT130I CCWGG 2 cut(s) 418, 645
BclI TGATCA 1 cut(s) 721
BcnI CCSGG 2 cut(s) 155, 276
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 522, 558
BfuAI ACCTGC 1 cut(s) 613
BisI GCNGC 8 cut(s) 36, 39, 159, 263, 266, 269, 272, 476
BlsI GCNGC 8 cut(s) 37, 40, 160, 264, 267, 270, 273, 477
Bme1390I CCNGG 4 cut(s) 155, 276, 418, 645
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 4 cut(s) 155, 276, 418, 645
BmsI GCATC 1 cut(s) 249
BpuMI CCSGG 2 cut(s) 155, 276
BsaJI CCNNGG 3 cut(s) 9, 423, 455
BsaWI WCCGGW 1 cut(s) 571
Bsc4I CCNNNNNNNGG 4 cut(s) 160, 275, 650, 698
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 731
Bse3DI GCAATG 1 cut(s) 615
BseBI CCWGG 2 cut(s) 418, 645
BseDI CCNNGG 3 cut(s) 9, 423, 455
BseLI CCNNNNNNNGG 4 cut(s) 160, 275, 650, 698
BseMI GCAATG 1 cut(s) 615
BseNI ACTGG 1 cut(s) 731
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 129
BseX3I CGGCCG 1 cut(s) 476
BsgI GTGCAG 2 cut(s) 522, 617
Bsh1236I CGCG 1 cut(s) 530
Bsh1285I CGRYCG 2 cut(s) 202, 479
BshFI GGCC 2 cut(s) 8, 478
BshTI ACCGGT 1 cut(s) 571
BsiEI CGRYCG 2 cut(s) 202, 479
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 3 cut(s) 155, 275, 572
BslI CCNNNNNNNGG 4 cut(s) 160, 275, 650, 698
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 2 cut(s) 8, 478
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 199, 721
BspANI GGCC 2 cut(s) 8, 478
BspFNI CGCG 1 cut(s) 530
BspLI GGNNCC 1 cut(s) 570
BspMI ACCTGC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 1 cut(s) 731
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 3 cut(s) 9, 423, 455
BssMI GATC 2 cut(s) 199, 721
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 2 cut(s) 418, 645
Bst6I CTCTTC 3 cut(s) 618, 660, 672
BstC8I GCNNGC 1 cut(s) 632
BstDSI CCRYGG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 530
BstKTI GATC 2 cut(s) 202, 724
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 199, 721
BstMCI CGRYCG 2 cut(s) 202, 479
BstMWI GCNNNNNNNGC 4 cut(s) 268, 271, 509, 605
BstNI CCWGG 2 cut(s) 418, 645
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 4 cut(s) 153, 274, 416, 643
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 1 cut(s) 530
BstXI CCANNNNNNTGG 1 cut(s) 644
BstZI CGGCCG 1 cut(s) 476
BsuRI GGCC 2 cut(s) 8, 478
BtgI CCRYGG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 724
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 632
Cfr10I RCCGGY 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 420
CseI GACGC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 58, 151, 730
CspAI ACCGGT 1 cut(s) 571
CviAII CATG 2 cut(s) 93, 341
CviQI GTAC 3 cut(s) 58, 151, 730
DpnI GATC 2 cut(s) 201, 723
DpnII GATC 2 cut(s) 199, 721
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 2 cut(s) 6, 476
EagI CGGCCG 1 cut(s) 476
Eam1104I CTCTTC 3 cut(s) 618, 660, 672
EarI CTCTTC 3 cut(s) 618, 660, 672
EciI GGCGGA 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 420
Eco52I CGGCCG 1 cut(s) 476
EcoRII CCWGG 2 cut(s) 416, 643
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 2 cut(s) 96, 344
FatI CATG 2 cut(s) 92, 340
FbaI TGATCA 1 cut(s) 721
Fnu4HI GCNGC 8 cut(s) 36, 39, 159, 263, 266, 269, 272, 476
Fsp4HI GCNGC 8 cut(s) 36, 39, 159, 263, 266, 269, 272, 476
FspBI CTAG 2 cut(s) 522, 558
GluI GCNGC 8 cut(s) 36, 39, 159, 263, 266, 269, 272, 476
HaeIII GGCC 2 cut(s) 8, 478
HapII CCGG 3 cut(s) 155, 275, 572
HgaI GACGC 1 cut(s) 187
Hin1II CATG 2 cut(s) 96, 344
HinfI GANTC 3 cut(s) 413, 613, 682
HpaII CCGG 3 cut(s) 155, 275, 572
HphI GGTGA 5 cut(s) 91, 407, 416, 422, 556
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 195, 459
Hpy188III TCNNGA 1 cut(s) 712
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 535
HpyAV CCTTC 3 cut(s) 76, 327, 454
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 127, 503, 608, 634
HpyF10VI GCNNNNNNNGC 4 cut(s) 268, 271, 509, 605
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 2 cut(s) 96, 344
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 2 cut(s) 199, 721
LweI GCATC 1 cut(s) 249
MaeI CTAG 2 cut(s) 522, 558
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 517
MalI GATC 2 cut(s) 201, 723
MboI GATC 2 cut(s) 199, 721
MboII GAAGA 4 cut(s) 635, 674, 677, 689
MhlI GDGCHC 1 cut(s) 129
MnlI CCTC 8 cut(s) 70, 238, 323, 418, 465, 540, 559, 585
MroXI GAANNNNTTC 1 cut(s) 681
MseI TTAA 1 cut(s) 588
MspI CCGG 3 cut(s) 155, 275, 572
MspR9I CCNGG 4 cut(s) 155, 276, 418, 645
MvaI CCWGG 2 cut(s) 418, 645
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 4 cut(s) 268, 271, 509, 605
NciI CCSGG 2 cut(s) 155, 276
NdeII GATC 2 cut(s) 199, 721
NlaIII CATG 2 cut(s) 96, 344
NlaIV GGNNCC 1 cut(s) 570
NmuCI GTSAC 1 cut(s) 517
NspI RCATGY 1 cut(s) 344
PciI ACATGT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 3 cut(s) 413, 613, 682
PflMI CCANNNNNTGG 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 416
PinAI ACCGGT 1 cut(s) 571
PkrI GCNGC 8 cut(s) 37, 40, 160, 264, 267, 270, 273, 477
Ple19I CGATCG 1 cut(s) 202
PscI ACATGT 1 cut(s) 340
Psp6I CCWGG 2 cut(s) 416, 643
PspGI CCWGG 2 cut(s) 416, 643
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 1 cut(s) 420
PvuI CGATCG 1 cut(s) 202
RsaI GTAC 3 cut(s) 59, 152, 731
RsaNI GTAC 3 cut(s) 58, 151, 730
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 8 cut(s) 36, 39, 159, 263, 266, 269, 272, 476
Sau3AI GATC 2 cut(s) 199, 721
Sau96I GGNCC 1 cut(s) 420
ScrFI CCNGG 4 cut(s) 155, 276, 418, 645
SduI GDGCHC 1 cut(s) 129
SetI ASST 9 cut(s) 27, 81, 87, 149, 429, 559, 607, 642, 781
SfaNI GCATC 1 cut(s) 249
SinI GGWCC 1 cut(s) 420
SspI AATATT 1 cut(s) 696
SspMI CTAG 2 cut(s) 522, 558
StyD4I CCNGG 4 cut(s) 153, 274, 416, 643
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 349
TaqII GACCGA 1 cut(s) 437
TauI GCSGC 8 cut(s) 38, 41, 161, 265, 268, 271, 274, 478
TfiI GAWTC 3 cut(s) 413, 613, 682
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 1 cut(s) 731
TseFI GTSAC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 2 cut(s) 173, 636
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 698
VneI GTGCAC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 420
XceI RCATGY 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 2 cut(s) 522, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.