Rh5DG315600

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017630
Physical Location & Seq
Reverse (-)
40496706 .. 40497956
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG315600.1

Sequence Viewer

Length: 1251 bp
ATGACGGATAACCAACTACCGGAAGACATCATAGTCTCCGACATCCTGGTCAAACTCCCCATCAAATCCTTAATCCGCTGCACTTGCGTCTCGAAACGGTGGCGTTTCCTTATCTCCGACCCCGAATTCGCCAAATCCCACCTCCAACTAGCTCGCCGCCGCCACCACACCTTGACCCGCCGCCTCCTCCTCTACTGCTCCCCCTCCCAAGTTGAATCCCTTGACTTGGAAACGCCGCCGTCTCCGTCTTCTCCGATTCGCAACCTCACCTGTAAACTAAACAACCAACCCGAATCGATCAAGCTCCTCGGCTCCTGCAACGGCCTGGTATGCGTCTGTACGGATCCCACTTTGAGCAGTTGTGATCTCTTCATCTGGAACCCATCAACTGGGTTCTTGCGTAATCTACCGTACCCATGTTTTTCCTCGGCGACCCACACTGTTCTGTACGGCGGGTTCGGGTACTTGTCGGCCGCGGACGACTACAAGGTCGTGGTGGCGGCGGACAATGTGTTCGACTACGGCGATAATGTGGTGGAGGTGAAGGTGTTGTCATGGAGAACAGGGGTTTGGAGAAAGATTGAAGTGCACCCTTTGTTGTCTTACACGTTGTACCCTGCGGCGGTTGTGGTGGGGGAGACGCTTCATTGGTTTCGGAACGATCGTTGGTTAGGGTCGGCGATTATTGGTTTTGATTTGGACAAGGAGGAGTTTAGGGAGATGCCGCCGCCGCCGCCGAGTTTTTGGCAGAGATATGATAGAGATTATGTTGGGTGTGTGGGTTGTTGGGGAGGAAGGCTACATGTGTTTCGATATACGGCTCGTGTTTGCGATGTTATGGAGTTATGGGTTAGGGGTGAGAATGGTGATGGTGAGTCGTGGACCGAGGTGTTCAAGTTGAAAATAGCCGACGAGCCTCGGAAGGCTGTGTTCCTGCGGCCGTTTTTGGCTGGGGGAAGTAGTGCAGTTGTGGCGAAGGTGACTAGGAACGCGACGATGGAGATGGTGAGGATTGAACCTAGAGATGAGGAACCGGTTGTAGATATGTTTAAGAGGGGGGTTGAACCTGCAATGATTCTATATGAAGAGAGCCTGCACCGGCTTCCTGGTTGTGGTGCGGTGGAAGAAGAGAAGGTGGAAGAGATTCAAACCCCAGTATTTGGTGCTCTATTCTGGATTACTGATCACTGGTACTCTATTCTGGCTTTGGTTGGTTTTCTTATTTCTCTGTGCTATATACCTGTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

416

Amino Acids

47.28

Weight (kDa)

5.91

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 1.7e-07 F-box domain
F-box-like PF12937 5 - 43 3.5e-07 F-box-like
b-prop_At3g26010-like PF24750 81 - 236 5.8e-07 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 85 - 296 1.4e-13 F-box associated beta propeller domain
FBA_1 PF07734 88 - 310 1e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24880
rosa_chinensis RchiOBHm_Chr5g0044501
rosa_laevigata RLG00000034276
rosa_multiflora Rmu_co8185722.1_g000001 Rmu_sc0011598.1_g000002 Rmu_ssc0000151.1_g000013
rosa_roxburghii Rroxscaffold_1G00036510
rosa_rugosa Rorug05G0214600
rosa_samantha Rh5BG306300 Rh5CG333200 Rh5DG315600
rosa_wichuraiana Rw5G027630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 32, 47, 488
Acc36I ACCTGC 1 cut(s) 1075
AccB7I CCANNNNNTGG 2 cut(s) 389, 1160
AccII CGCG 2 cut(s) 476, 992
AclWI GGATC 2 cut(s) 338, 351
AcoI YGGCCR 2 cut(s) 471, 938
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 6 cut(s) 340, 413, 449, 464, 614, 1193
AfiI CCNNNNNNNGG 6 cut(s) 19, 226, 389, 622, 1112, 1160
AflIII ACRYGT 2 cut(s) 606, 802
AgeI ACCGGT 1 cut(s) 1033
AgsI TTSAA 7 cut(s) 215, 584, 895, 901, 1016, 1064, 1148
AjnI CCWGG 3 cut(s) 45, 324, 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 553, 585
AloI GAACNNNNNNTCC 2 cut(s) 497, 529
AluBI AGCT 2 cut(s) 152, 304
AluI AGCT 2 cut(s) 152, 304
Alw21I GWGCWC 2 cut(s) 591, 1168
Alw26I GTCTC 4 cut(s) 40, 94, 246, 632
Alw44I GTGCAC 1 cut(s) 587
AlwI GGATC 2 cut(s) 338, 351
AoxI GGCC 3 cut(s) 322, 471, 938
ApaLI GTGCAC 1 cut(s) 587
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 4 cut(s) 110, 142, 497, 529
AsiGI ACCGGT 1 cut(s) 1033
Asp700I GAANNNNTTC 1 cut(s) 1143
AspS9I GGNCC 1 cut(s) 882
AsuHPI GGTGA 7 cut(s) 259, 553, 869, 878, 884, 991, 1018
AvaII GGWCC 1 cut(s) 882
BaeGI GKGCMC 1 cut(s) 591
BamHI GGATCC 1 cut(s) 343
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 2 cut(s) 30, 240
Bbv12I GWGCWC 2 cut(s) 591, 1168
BbvI GCAGC 1 cut(s) 65
BccI CCATC 5 cut(s) 68, 391, 863, 991, 997
BceAI ACGGC 6 cut(s) 223, 337, 466, 538, 834, 925
BciT130I CCWGG 3 cut(s) 47, 326, 1107
BclI TGATCA 1 cut(s) 1183
BcoDI GTCTC 4 cut(s) 40, 94, 246, 632
BfaI CTAG 3 cut(s) 149, 984, 1020
BfuAI ACCTGC 1 cut(s) 1075
Bme1390I CCNGG 3 cut(s) 47, 326, 1107
Bme18I GGWCC 1 cut(s) 882
BmgT120I GGNCC 1 cut(s) 882
BmiI GGNNCC 4 cut(s) 313, 345, 380, 1032
BmrFI CCNGG 3 cut(s) 47, 326, 1107
BmrI ACTGGG 2 cut(s) 399, 1148
BmsI GCATC 1 cut(s) 711
BmuI ACTGGG 2 cut(s) 399, 1148
BpiI GAAGAC 2 cut(s) 30, 240
Bsa29I ATCGAT 1 cut(s) 296
BsaJI CCNNGG 5 cut(s) 307, 426, 474, 885, 917
BsaWI WCCGGW 2 cut(s) 19, 1033
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 226, 389, 622, 1112, 1160
Bse118I RCCGGY 2 cut(s) 1033, 1098
Bse1I ACTGG 3 cut(s) 394, 1154, 1193
Bse3DI GCAATG 1 cut(s) 1077
BseBI CCWGG 3 cut(s) 47, 326, 1107
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 5 cut(s) 307, 426, 474, 885, 917
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 6 cut(s) 19, 226, 389, 622, 1112, 1160
BseMI GCAATG 1 cut(s) 1077
BseNI ACTGG 3 cut(s) 394, 1154, 1193
BseRI GAGGAG 4 cut(s) 176, 179, 296, 722
BseSI GKGCMC 1 cut(s) 591
BseX3I CGGCCG 2 cut(s) 471, 938
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 950
BsgI GTGCAG 3 cut(s) 64, 984, 1079
Bsh1236I CGCG 2 cut(s) 476, 992
Bsh1285I CGRYCG 3 cut(s) 474, 664, 941
BshFI GGCC 3 cut(s) 324, 473, 940
BshTI ACCGGT 1 cut(s) 1033
BshVI ATCGAT 1 cut(s) 296
BsiEI CGRYCG 3 cut(s) 474, 664, 941
BsiHKAI GWGCWC 2 cut(s) 591, 1168
BsiSI CCGG 3 cut(s) 20, 1034, 1099
BslI CCNNNNNNNGG 6 cut(s) 19, 226, 389, 622, 1112, 1160
BsmAI GTCTC 4 cut(s) 40, 94, 246, 632
BsmBI CGTCTC 3 cut(s) 94, 246, 632
BsnI GGCC 3 cut(s) 324, 473, 940
Bsp1286I GDGCHC 2 cut(s) 591, 1168
Bsp143I GATC 5 cut(s) 297, 343, 364, 661, 1183
BspANI GGCC 3 cut(s) 324, 473, 940
BspDI ATCGAT 1 cut(s) 296
BspFNI CGCG 2 cut(s) 476, 992
BspLI GGNNCC 4 cut(s) 313, 345, 380, 1032
BspMI ACCTGC 1 cut(s) 1075
BspPI GGATC 2 cut(s) 338, 351
BsrDI GCAATG 1 cut(s) 1077
BsrFI RCCGGY 2 cut(s) 1033, 1098
BsrI ACTGG 3 cut(s) 394, 1154, 1193
BssAI RCCGGY 2 cut(s) 1033, 1098
BssECI CCNNGG 5 cut(s) 307, 426, 474, 885, 917
BssMI GATC 5 cut(s) 297, 343, 364, 661, 1183
BssSI CACGAG 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 3 cut(s) 47, 326, 1107
Bst4CI ACNGT 3 cut(s) 99, 411, 442
Bst6I CTCTTC 4 cut(s) 374, 1080, 1122, 1134
BstC8I GCNNGC 2 cut(s) 154, 1094
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 2 cut(s) 476, 992
BstKTI GATC 5 cut(s) 300, 346, 367, 664, 1186
BstMAI GTCTC 4 cut(s) 40, 94, 246, 632
BstMBI GATC 5 cut(s) 297, 343, 364, 661, 1183
BstMCI CGRYCG 3 cut(s) 474, 664, 941
BstMWI GCNNNNNNNGC 5 cut(s) 84, 330, 730, 733, 971
BstNI CCWGG 3 cut(s) 47, 326, 1107
BstNSI RCATGY 1 cut(s) 806
BstSCI CCNGG 3 cut(s) 45, 324, 1105
BstSLI GKGCMC 1 cut(s) 591
BstUI CGCG 2 cut(s) 476, 992
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 2 cut(s) 30, 240
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BstZI CGGCCG 2 cut(s) 471, 938
Bsu15I ATCGAT 1 cut(s) 296
BsuRI GGCC 3 cut(s) 324, 473, 940
BsuTUI ATCGAT 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 846
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 438, 1186
BveI ACCTGC 1 cut(s) 1075
Cac8I GCNNGC 2 cut(s) 154, 1094
Cfr10I RCCGGY 2 cut(s) 1033, 1098
Cfr13I GGNCC 1 cut(s) 882
Cfr42I CCGCGG 1 cut(s) 477
ClaI ATCGAT 1 cut(s) 296
CseI GACGC 3 cut(s) 76, 322, 649
Csp6I GTAC 6 cut(s) 339, 412, 448, 463, 613, 1192
CspAI ACCGGT 1 cut(s) 1033
CviAII CATG 3 cut(s) 417, 555, 803
CviQI GTAC 6 cut(s) 339, 412, 448, 463, 613, 1192
DpnI GATC 5 cut(s) 299, 345, 366, 663, 1185
DpnII GATC 5 cut(s) 297, 343, 364, 661, 1183
DrdI GACNNNNNNGTC 3 cut(s) 32, 47, 488
DseDI GACNNNNNNGTC 3 cut(s) 32, 47, 488
EaeI YGGCCR 2 cut(s) 471, 938
EagI CGGCCG 2 cut(s) 471, 938
Eam1104I CTCTTC 4 cut(s) 374, 1080, 1122, 1134
EarI CTCTTC 4 cut(s) 374, 1080, 1122, 1134
EciI GGCGGA 1 cut(s) 518
EclXI CGGCCG 2 cut(s) 471, 938
Eco47I GGWCC 1 cut(s) 882
Eco52I CGGCCG 2 cut(s) 471, 938
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 45, 324, 1105
Esp3I CGTCTC 3 cut(s) 94, 246, 632
FaeI CATG 3 cut(s) 420, 558, 806
FatI CATG 3 cut(s) 416, 554, 802
FauI CCCGC 2 cut(s) 185, 446
FbaI TGATCA 1 cut(s) 1183
FokI GGATG 1 cut(s) 29
FspBI CTAG 3 cut(s) 149, 984, 1020
GsaI CCCAGC 1 cut(s) 954
HaeIII GGCC 3 cut(s) 324, 473, 940
HapII CCGG 3 cut(s) 20, 1034, 1099
HgaI GACGC 3 cut(s) 76, 322, 649
Hin1II CATG 3 cut(s) 420, 558, 806
HinfI GANTC 6 cut(s) 215, 256, 293, 875, 1075, 1144
HpaII CCGG 3 cut(s) 20, 1034, 1099
HphI GGTGA 7 cut(s) 259, 553, 869, 878, 884, 991, 1018
Hpy166II GTNNAC 3 cut(s) 275, 589, 882
Hpy188I TCNGA 5 cut(s) 40, 118, 255, 657, 921
Hpy188III TCNNGA 3 cut(s) 91, 376, 1174
Hpy8I GTNNAC 3 cut(s) 275, 589, 882
Hpy99I CGWCG 2 cut(s) 914, 997
HpyAV CCTTC 5 cut(s) 538, 789, 916, 970, 1126
HpyCH4III ACNGT 3 cut(s) 99, 411, 442
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 6 cut(s) 81, 318, 589, 965, 1070, 1096
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 330, 730, 733, 971
HpySE526I ACGT 1 cut(s) 608
Hsp92II CATG 3 cut(s) 420, 558, 806
Ksp22I TGATCA 1 cut(s) 1183
KspI CCGCGG 1 cut(s) 477
Kzo9I GATC 5 cut(s) 297, 343, 364, 661, 1183
LmnI GCTCC 3 cut(s) 203, 309, 317
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 711
MaeI CTAG 3 cut(s) 149, 984, 1020
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 1 cut(s) 979
MalI GATC 5 cut(s) 299, 345, 366, 663, 1185
MboI GATC 5 cut(s) 297, 343, 364, 661, 1183
MboII GAAGA 7 cut(s) 35, 240, 361, 1097, 1136, 1139, 1151
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 591, 1168
MluCI AATT 1 cut(s) 125
MlyI GAGTC 1 cut(s) 884
MmeI TCCRAC 3 cut(s) 63, 141, 169
MroXI GAANNNNTTC 1 cut(s) 1143
MseI TTAA 2 cut(s) 71, 1050
MspA1I CMGCKG 2 cut(s) 78, 476
MspI CCGG 3 cut(s) 20, 1034, 1099
MspR9I CCNGG 3 cut(s) 47, 326, 1107
MvaI CCWGG 3 cut(s) 47, 326, 1107
MvnI CGCG 2 cut(s) 476, 992
MwoI GCNNNNNNNGC 5 cut(s) 84, 330, 730, 733, 971
NdeII GATC 5 cut(s) 297, 343, 364, 661, 1183
NlaIII CATG 3 cut(s) 420, 558, 806
NlaIV GGNNCC 4 cut(s) 313, 345, 380, 1032
NmeAIII GCCGAG 3 cut(s) 288, 407, 762
NmuCI GTSAC 1 cut(s) 979
NspI RCATGY 1 cut(s) 806
PciI ACATGT 1 cut(s) 802
PcsI WCGNNNNNNNCGW 2 cut(s) 522, 661
PdmI GAANNNNTTC 1 cut(s) 1143
PfeI GAWTC 5 cut(s) 215, 256, 293, 1075, 1144
PflMI CCANNNNNTGG 2 cut(s) 389, 1160
PinAI ACCGGT 1 cut(s) 1033
Ple19I CGATCG 1 cut(s) 664
PleI GAGTC 1 cut(s) 883
PpsI GAGTC 1 cut(s) 883
PscI ACATGT 1 cut(s) 802
Psp6I CCWGG 3 cut(s) 45, 324, 1105
PspFI CCCAGC 1 cut(s) 950
PspGI CCWGG 3 cut(s) 45, 324, 1105
PspN4I GGNNCC 4 cut(s) 313, 345, 380, 1032
PspPI GGNCC 1 cut(s) 882
PsrI GAACNNNNNNTAC 2 cut(s) 440, 472
PsuI RGATCY 1 cut(s) 343
PvuI CGATCG 1 cut(s) 664
RsaI GTAC 6 cut(s) 340, 413, 449, 464, 614, 1193
RsaNI GTAC 6 cut(s) 339, 412, 448, 463, 613, 1192
SacII CCGCGG 1 cut(s) 477
SaqAI TTAA 2 cut(s) 71, 1050
Sau3AI GATC 5 cut(s) 297, 343, 364, 661, 1183
Sau96I GGNCC 1 cut(s) 882
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 3 cut(s) 47, 326, 1107
SduI GDGCHC 2 cut(s) 591, 1168
SfaNI GCATC 1 cut(s) 711
Sfr303I CCGCGG 1 cut(s) 477
SgrBI CCGCGG 1 cut(s) 477
SinI GGWCC 1 cut(s) 882
Sse9I AATT 1 cut(s) 125
SspMI CTAG 3 cut(s) 149, 984, 1020
StyD4I CCNGG 3 cut(s) 45, 324, 1105
TaaI ACNGT 3 cut(s) 99, 411, 442
TaiI ACGT 1 cut(s) 611
TaqI TCGA 4 cut(s) 92, 296, 516, 811
TaqII GACCGA 1 cut(s) 899
TasI AATT 1 cut(s) 125
TfiI GAWTC 5 cut(s) 215, 256, 293, 1075, 1144
Tru1I TTAA 2 cut(s) 71, 1050
Tru9I TTAA 2 cut(s) 71, 1050
TscAI CASTG 2 cut(s) 445, 1193
TseFI GTSAC 1 cut(s) 979
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 979
TspDTI ATGAA 3 cut(s) 361, 635, 1098
TspGWI ACGGA 3 cut(s) 20, 234, 356
TspRI CASTG 2 cut(s) 445, 1193
Van91I CCANNNNNTGG 2 cut(s) 389, 1160
VneI GTGCAC 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 882
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 806
XmnI GAANNNNTTC 1 cut(s) 1143
XspI CTAG 3 cut(s) 149, 984, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.