FvH4_3g25520

Telomere length regulation protein TEL2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011544
Physical Location & Seq
Forward (+)
18436994 .. 18439153
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25520.t1

Sequence Viewer

Length: 921 bp
ATGTTATTTACTCTGGTGTATTTCATTTTGGCTAGATGGTTGAAATGTGCTGGGGAGGCAATTTTAAAGAGACATACTTCCGGCTTCCTTTTGATCACTGGTGTTGCTTCCAATTGGCTGACTTGTTTACCGTTTTCAGCACGGAAACATGTGTATGATGTATTCTTTGTTAACAGTCTTGCCACTGAGGTTGTTCAGATTTTGGTCCCTTGTCTACAGCAAAGTGGAAGCGGTGATGTTGGTGTCAATGATGTTCACGCCAATACTGAAAGGTTACTCGTACTTTGCTTTCTTGAAAACAAGGGGGTGCTCCAGATGGCTAGAGAATCTGGTGACTGTTTGCAGTCTGAAGAAAATCTCAAGTCAACTGTTTCTAGAGTATCACAGATTGTTGCGTCTATACCTGACAAAGCAAAATCGAGAGCCCTGACTTCTCCTTCATCACACTTGTTCTTTAAGCAAGTTACCATTCAGCTTCGTTTTCTAGCAGAAGAAGGGAATATGGAGATGTTAGATGAACGAGCCTTCTGTAATAATGACATGAACTGGACATTACTGTTCGTTGGGGAAACATTTCCTGGTATATGTCGACGTGGATCTGTAGATGTGCTTTTAAGTAAAATAATTCCAAGGATCCTTAGGCATGTTCGAAGTTTGTCATCGTCCACTATGGAGTCACTACGTTCAGATGTTCTGGAATCATCCCCTGGTTCCCAATTTTGGTTGAATCTTATTCAAGCAATCAAAGATTCATATGCTGGGGAAAAAATGTCTGAGCAACTTTTACATCAGCTTGCAACTGAACAAGTGGATGATGTTGAAGCTTACCGGATTCTTTTACTGAACTTCTGTCCGCAATATCGAGAGCAGTTCAAAAAGCCAAACCCCGAGAAGGACAATGAACCCACCCAAGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04150 map03460 map04150
Pfam Domains
Protein Families
Telomere_reg-2

Protein Analysis

307

Amino Acids

34.57

Weight (kDa)

5.77

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TELO2_ARM PF25320 202 - 290 1.1e-26 TELO2 ARM repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 214, 589
AciI CCGC 2 cut(s) 231, 854
AclWI GGATC 3 cut(s) 604, 628, 641
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 720, 892
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 6 cut(s) 43, 296, 727, 737, 821, 874
AjiI CACGTC 1 cut(s) 593
AjnI CCWGG 2 cut(s) 577, 706
AluBI AGCT 3 cut(s) 475, 793, 824
AluI AGCT 3 cut(s) 475, 793, 824
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 3 cut(s) 604, 628, 641
Ama87I CYCGRG 1 cut(s) 887
Asp700I GAANNNNTTC 1 cut(s) 573
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 245, 344
AsuII TTCGAA 1 cut(s) 649
AvaI CYCGRG 1 cut(s) 887
AvaII GGWCC 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 638
BamHI GGATCC 1 cut(s) 633
BanII GRGCYC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 312
BccI CCATC 2 cut(s) 30, 310
BciT130I CCWGG 2 cut(s) 579, 708
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 4 cut(s) 33, 321, 375, 485
BfmI CTRYAG 2 cut(s) 215, 600
Bme1390I CCNGG 2 cut(s) 579, 708
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 887
BmgBI CACGTC 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 3 cut(s) 207, 635, 712
BmrFI CCNGG 2 cut(s) 579, 708
BpmI CTGGAG 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 629, 706
BsaWI WCCGGW 1 cut(s) 828
Bsc4I CCNNNNNNNGG 2 cut(s) 720, 892
Bse1I ACTGG 2 cut(s) 103, 551
Bse21I CCTNAGG 1 cut(s) 638
BseBI CCWGG 2 cut(s) 579, 708
BseDI CCNNGG 2 cut(s) 629, 706
BseGI GGATG 2 cut(s) 701, 817
BseLI CCNNNNNNNGG 2 cut(s) 720, 892
BseMII CTCAG 2 cut(s) 177, 765
BseNI ACTGG 2 cut(s) 103, 551
BseYI CCCAGC 2 cut(s) 50, 758
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 2 cut(s) 81, 829
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 720, 892
BsmAI GTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 887
Bsp119I TTCGAA 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 312, 427
Bsp143I GATC 3 cut(s) 93, 596, 633
BspACI CCGC 2 cut(s) 231, 854
BspCNI CTCAG 2 cut(s) 178, 766
BspLI GGNNCC 3 cut(s) 207, 635, 712
BspPI GGATC 3 cut(s) 604, 628, 641
BspT104I TTCGAA 1 cut(s) 649
BsrI ACTGG 2 cut(s) 103, 551
BssECI CCNNGG 2 cut(s) 629, 706
BssMI GATC 3 cut(s) 93, 596, 633
BssT1I CCWWGG 1 cut(s) 629
Bst2UI CCWGG 2 cut(s) 579, 708
Bst4CI ACNGT 5 cut(s) 132, 176, 338, 370, 558
BstBI TTCGAA 1 cut(s) 649
BstC8I GCNNGC 1 cut(s) 795
BstDEI CTNAG 3 cut(s) 186, 638, 774
BstF5I GGATG 2 cut(s) 701, 817
BstKTI GATC 3 cut(s) 96, 599, 636
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 3 cut(s) 93, 596, 633
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 2 cut(s) 579, 708
BstNSI RCATGY 2 cut(s) 152, 647
BstSCI CCNGG 2 cut(s) 577, 706
BstSFI CTRYAG 2 cut(s) 215, 600
BstX2I RGATCY 2 cut(s) 596, 633
BstYI RGATCY 2 cut(s) 596, 633
Bsu36I CCTNAGG 1 cut(s) 638
BtrI CACGTC 1 cut(s) 593
BtsCI GGATG 2 cut(s) 701, 817
BtsIMutI CAGTG 2 cut(s) 96, 183
Cac8I GCNNGC 1 cut(s) 795
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 281
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 3 cut(s) 149, 541, 644
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 3 cut(s) 186, 638, 774
DpnI GATC 3 cut(s) 95, 598, 635
DpnII GATC 3 cut(s) 93, 596, 633
DraI TTTAAA 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 629
Eco24I GRGCYC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 638
Eco88I CYCGRG 1 cut(s) 887
EcoRII CCWGG 2 cut(s) 577, 706
EcoT14I CCWWGG 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 629
FaeI CATG 3 cut(s) 152, 544, 647
FaqI GGGAC 1 cut(s) 191
FatI CATG 3 cut(s) 148, 540, 643
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 2 cut(s) 214, 589
FokI GGATG 2 cut(s) 688, 824
FriOI GRGCYC 1 cut(s) 427
FspBI CTAG 4 cut(s) 33, 321, 375, 485
GsaI CCCAGC 2 cut(s) 54, 762
GsuI CTGGAG 1 cut(s) 296
HapII CCGG 2 cut(s) 81, 829
HgaI GACGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 152, 544, 647
HincII GTYRAC 3 cut(s) 172, 366, 590
HindII GTYRAC 3 cut(s) 172, 366, 590
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 6 cut(s) 326, 674, 698, 727, 749, 832
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 2 cut(s) 81, 829
HphI GGTGA 2 cut(s) 245, 344
Hpy166II GTNNAC 7 cut(s) 128, 172, 215, 256, 366, 590, 666
Hpy188I TCNGA 4 cut(s) 198, 349, 688, 775
Hpy188III TCNNGA 6 cut(s) 293, 313, 375, 420, 695, 863
Hpy8I GTNNAC 7 cut(s) 128, 172, 215, 256, 366, 590, 666
Hpy99I CGWCG 1 cut(s) 594
HpyAV CCTTC 4 cut(s) 447, 488, 535, 886
HpyCH4III ACNGT 5 cut(s) 132, 176, 338, 370, 558
HpyCH4IV ACGT 2 cut(s) 592, 682
HpyCH4V TGCA 2 cut(s) 343, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 186, 638, 774
HpySE526I ACGT 2 cut(s) 592, 682
Hsp92II CATG 3 cut(s) 152, 544, 647
Ksp22I TGATCA 1 cut(s) 93
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 93, 596, 633
LmnI GCTCC 1 cut(s) 315
MaeI CTAG 4 cut(s) 33, 321, 375, 485
MaeII ACGT 2 cut(s) 592, 682
MaeIII GTNAC 4 cut(s) 273, 332, 463, 675
MalI GATC 3 cut(s) 95, 598, 635
MboI GATC 3 cut(s) 93, 596, 633
MboII GAAGA 2 cut(s) 362, 503
MfeI CAATTG 1 cut(s) 112
MflI RGATCY 2 cut(s) 596, 633
MhlI GDGCHC 2 cut(s) 312, 427
MluCI AATT 4 cut(s) 60, 112, 624, 716
MlyI GAGTC 1 cut(s) 683
MnlI CCTC 3 cut(s) 49, 181, 907
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 4 cut(s) 65, 171, 456, 614
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 2 cut(s) 81, 829
MspR9I CCNGG 2 cut(s) 579, 708
MunI CAATTG 1 cut(s) 112
MvaI CCWGG 2 cut(s) 579, 708
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeI CATATG 1 cut(s) 754
NdeII GATC 3 cut(s) 93, 596, 633
NlaIII CATG 3 cut(s) 152, 544, 647
NlaIV GGNNCC 3 cut(s) 207, 635, 712
NmuCI GTSAC 2 cut(s) 332, 675
NspI RCATGY 2 cut(s) 152, 647
NspV TTCGAA 1 cut(s) 649
PciI ACATGT 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 5 cut(s) 326, 698, 727, 749, 832
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PscI ACATGT 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 577, 706
PspFI CCCAGC 2 cut(s) 50, 758
PspGI CCWGG 2 cut(s) 577, 706
PspN4I GGNNCC 3 cut(s) 207, 635, 712
PspPI GGNCC 1 cut(s) 205
PsuI RGATCY 2 cut(s) 596, 633
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 153
SalI GTCGAC 1 cut(s) 588
SaqAI TTAA 4 cut(s) 65, 171, 456, 614
Sau3AI GATC 3 cut(s) 93, 596, 633
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 2 cut(s) 579, 708
SduI GDGCHC 2 cut(s) 312, 427
SetI ASST 8 cut(s) 192, 275, 406, 477, 595, 685, 795, 826
SfcI CTRYAG 2 cut(s) 215, 600
SfuI TTCGAA 1 cut(s) 649
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 4 cut(s) 60, 112, 624, 716
SsiI CCGC 2 cut(s) 231, 854
SspMI CTAG 4 cut(s) 33, 321, 375, 485
StyD4I CCNGG 2 cut(s) 577, 706
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 5 cut(s) 132, 176, 338, 370, 558
TaiI ACGT 2 cut(s) 595, 685
TaqI TCGA 4 cut(s) 419, 589, 649, 862
TasI AATT 4 cut(s) 60, 112, 624, 716
TfiI GAWTC 5 cut(s) 326, 698, 727, 749, 832
Tru1I TTAA 4 cut(s) 65, 171, 456, 614
Tru9I TTAA 4 cut(s) 65, 171, 456, 614
TscAI CASTG 2 cut(s) 103, 190
TseFI GTSAC 2 cut(s) 332, 675
Tsp45I GTSAC 2 cut(s) 332, 675
TspDTI ATGAA 6 cut(s) 13, 429, 531, 557, 741, 915
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 2 cut(s) 103, 190
VpaK11BI GGWCC 1 cut(s) 205
XbaI TCTAGA 1 cut(s) 374
XceI RCATGY 2 cut(s) 152, 647
XmiI GTMKAC 2 cut(s) 214, 589
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 4 cut(s) 33, 321, 375, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.