Rw7G022250

Telomere length regulation protein TEL2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011544
Physical Location & Seq
Forward (+)
26217583 .. 26220371
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022250.1

Sequence Viewer

Length: 687 bp
ATGGAGAATGGCTCCAAAAGACGAAGCGAAGGAGAAATCGGAGTTCTTGACAAGGTCGGAGAAGTGATCTCTGAATTAAACAAGTCCAAGCACGCAGACCAAGCCATTTGCGTGCTTCACTCCATCGCTTTTCTTCTCTTCCCTCTCGATCCTTCTCTCTTCTCAGGTGCTATCGGCGAGCGGTGCAGGGAGAAGGTTCTTAGTGTTGAAGCTCCTTCAGTTGATGAGAGGAGAGAACAAGTTACCGTTCAGCTTCTTTCTCTAGCAGAAGAAGGGAATATGGAGATGTTAGATGAAGGAGCCTTCCGTAAAAGTGACATGCAGGGGACCTTACTGTTTGTTGGGGAAACATTTTCTCGTATATCTCGACTTGGATCTGTAGATGTGCTTTTAAGTGAAATAATGCCAAGGATTCTTAGACATGTCTGGTGTTTGTCATCCCCAACTATGGACTCACTAGGTTCAGTTGTTCTGGAATCAGACCCGGGTTCCATATTTTGGTTTAATCTTATTCAAGCAATCAAAGATTCATATGATGTGGAAAGAATGTCTGAGCAACTTTTACATCAGCTTGCAACTGAACAAGTGGGTGATATTGAAGCTTACTGGGTTCTTTGGCTATTATTTCTTCCGGGTTTTTCAAATGCCAAATATCAGCGAGGTCCATGTTTACTGACAAGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04150 map03460 map04150
Pfam Domains
Protein Families
Telomere_reg-2

Protein Analysis

228

Amino Acids

25.53

Weight (kDa)

4.81

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TELO2_ARM PF25320 128 - 217 2.6e-27 TELO2 ARM repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 498
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 1 cut(s) 181
AclWI GGATC 2 cut(s) 143, 382
AcuI CTGAAG 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 448, 498
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 4 cut(s) 209, 515, 599, 642
AluBI AGCT 4 cut(s) 212, 253, 571, 602
AluI AGCT 4 cut(s) 212, 253, 571, 602
AlwI GGATC 2 cut(s) 143, 382
Ama87I CYCGRG 1 cut(s) 484
AspS9I GGNCC 2 cut(s) 327, 662
AsuC2I CCSGG 3 cut(s) 485, 486, 633
AsuHPI GGTGA 1 cut(s) 602
AvaI CYCGRG 1 cut(s) 484
AvaII GGWCC 2 cut(s) 327, 662
BccI CCATC 1 cut(s) 131
BcnI CCSGG 3 cut(s) 485, 486, 633
BfaI CTAG 2 cut(s) 263, 458
BfmI CTRYAG 1 cut(s) 378
Bme1390I CCNGG 3 cut(s) 485, 486, 633
Bme18I GGWCC 2 cut(s) 327, 662
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 327, 662
BmiI GGNNCC 4 cut(s) 13, 301, 328, 490
BmrFI CCNGG 3 cut(s) 485, 486, 633
BmrI ACTGGG 1 cut(s) 616
BmuI ACTGGG 1 cut(s) 616
BplI GAGNNNNNCTC 1 cut(s) 28
BpuMI CCSGG 3 cut(s) 485, 486, 633
BsaJI CCNNGG 2 cut(s) 407, 484
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 498
Bse1I ACTGG 1 cut(s) 611
BseDI CCNNGG 2 cut(s) 407, 484
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 2 cut(s) 448, 498
BseMII CTCAG 2 cut(s) 177, 543
BseNI ACTGG 1 cut(s) 611
BseRI GAGGAG 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 2 cut(s) 485, 632
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 448, 498
BsmFI GGGAC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 484
Bsp143I GATC 3 cut(s) 66, 148, 374
BspACI CCGC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 176, 544
BspLI GGNNCC 4 cut(s) 13, 301, 328, 490
BspPI GGATC 2 cut(s) 143, 382
BsrBI CCGCTC 1 cut(s) 181
BsrI ACTGG 1 cut(s) 611
BssECI CCNNGG 2 cut(s) 407, 484
BssMI GATC 3 cut(s) 66, 148, 374
BssT1I CCWWGG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 247, 336
Bst6I CTCTTC 2 cut(s) 143, 164
BstC8I GCNNGC 4 cut(s) 93, 113, 179, 573
BstDEI CTNAG 4 cut(s) 163, 200, 416, 552
BstF5I GGATG 1 cut(s) 437
BstKTI GATC 3 cut(s) 69, 151, 377
BstMBI GATC 3 cut(s) 66, 148, 374
BstMWI GCNNNNNNNGC 2 cut(s) 101, 183
BstNSI RCATGY 2 cut(s) 322, 425
BstSCI CCNGG 3 cut(s) 483, 484, 631
BstSFI CTRYAG 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 437
Cac8I GCNNGC 4 cut(s) 93, 113, 179, 573
Cfr13I GGNCC 2 cut(s) 327, 662
Cfr9I CCCGGG 1 cut(s) 484
CviAII CATG 3 cut(s) 319, 422, 666
CviJI RGCY 8 cut(s) 12, 104, 212, 253, 302, 571, 602, 619
CviKI_1 RGCY 8 cut(s) 12, 104, 212, 253, 302, 571, 602, 619
DdeI CTNAG 4 cut(s) 163, 200, 416, 552
DpnI GATC 3 cut(s) 68, 150, 376
DpnII GATC 3 cut(s) 66, 148, 374
Eam1104I CTCTTC 2 cut(s) 143, 164
EarI CTCTTC 2 cut(s) 143, 164
Eco130I CCWWGG 1 cut(s) 407
Eco47I GGWCC 2 cut(s) 327, 662
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 3 cut(s) 322, 425, 669
FaiI YATR 9 cut(s) 281, 320, 362, 423, 449, 494, 532, 534, 667
FaqI GGGAC 1 cut(s) 340
FatI CATG 3 cut(s) 318, 421, 665
FauNDI CATATG 1 cut(s) 532
FokI GGATG 1 cut(s) 424
FspBI CTAG 2 cut(s) 263, 458
HapII CCGG 2 cut(s) 485, 632
Hin1II CATG 3 cut(s) 322, 425, 669
HindIII AAGCTT 1 cut(s) 600
HinfI GANTC 4 cut(s) 412, 452, 476, 527
HpaII CCGG 2 cut(s) 485, 632
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 1 cut(s) 671
Hpy188I TCNGA 5 cut(s) 41, 59, 73, 481, 553
Hpy188III TCNNGA 4 cut(s) 47, 146, 366, 473
Hpy8I GTNNAC 1 cut(s) 671
HpyAV CCTTC 7 cut(s) 23, 162, 187, 225, 266, 290, 313
HpyCH4III ACNGT 2 cut(s) 247, 336
HpyCH4V TGCA 3 cut(s) 186, 322, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 183
HpyF3I CTNAG 4 cut(s) 163, 200, 416, 552
Hsp92II CATG 3 cut(s) 322, 425, 669
Kzo9I GATC 3 cut(s) 66, 148, 374
LmnI GCTCC 3 cut(s) 17, 217, 299
LpnPI CCDG 8 cut(s) 150, 172, 308, 412, 458, 498, 592, 645
MaeI CTAG 2 cut(s) 263, 458
MaeIII GTNAC 2 cut(s) 241, 314
MalI GATC 3 cut(s) 68, 150, 376
MbiI CCGCTC 1 cut(s) 181
MboI GATC 3 cut(s) 66, 148, 374
MboII GAAGA 5 cut(s) 125, 130, 151, 281, 620
MflI RGATCY 1 cut(s) 374
MluCI AATT 1 cut(s) 74
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 3 cut(s) 153, 222, 653
MseI TTAA 3 cut(s) 77, 392, 504
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 2 cut(s) 485, 632
MspR9I CCNGG 3 cut(s) 485, 486, 633
MwoI GCNNNNNNNGC 2 cut(s) 101, 183
NciI CCSGG 3 cut(s) 485, 486, 633
NdeI CATATG 1 cut(s) 532
NdeII GATC 3 cut(s) 66, 148, 374
NlaIII CATG 3 cut(s) 322, 425, 669
NlaIV GGNNCC 4 cut(s) 13, 301, 328, 490
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 2 cut(s) 322, 425
PciI ACATGT 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 364
PfeI GAWTC 3 cut(s) 412, 476, 527
PflFI GACNNNGTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 498
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PpuMI RGGWCCY 1 cut(s) 327
PscI ACATGT 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 327
PspN4I GGNNCC 4 cut(s) 13, 301, 328, 490
PspPI GGNCC 2 cut(s) 327, 662
PspPPI RGGWCCY 1 cut(s) 327
PsuI RGATCY 1 cut(s) 374
PsyI GACNNNGTC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 3 cut(s) 77, 392, 504
Sau3AI GATC 3 cut(s) 66, 148, 374
Sau96I GGNCC 2 cut(s) 327, 662
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 3 cut(s) 485, 486, 633
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 2 cut(s) 327, 662
SmaI CCCGGG 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 1 cut(s) 74
SsiI CCGC 1 cut(s) 181
SspMI CTAG 2 cut(s) 263, 458
StyD4I CCNGG 3 cut(s) 483, 484, 631
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 2 cut(s) 247, 336
TaqI TCGA 2 cut(s) 147, 367
TasI AATT 1 cut(s) 74
TfiI GAWTC 3 cut(s) 412, 476, 527
Tru1I TTAA 3 cut(s) 77, 392, 504
Tru9I TTAA 3 cut(s) 77, 392, 504
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 309, 519
TspGWI ACGGA 1 cut(s) 296
TspMI CCCGGG 1 cut(s) 484
Tth111I GACNNNGTC 1 cut(s) 53
Van91I CCANNNNNTGG 1 cut(s) 498
VpaK11BI GGWCC 2 cut(s) 327, 662
XceI RCATGY 2 cut(s) 322, 425
XmaI CCCGGG 1 cut(s) 484
XspI CTAG 2 cut(s) 263, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.