RchiOBHm_Chr1g0353191

Telomere length regulation protein TEL2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011544
Physical Location & Seq
Forward (+)
46483043 .. 46484050
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57884

Sequence Viewer

Length: 240 bp
ATGGACTCACTAGGTTCAGATGTTCTGGAATCAGACCCGGGTTCCATATTTTGGTTTAATCTTATTCAAGCAATCAAAGATTCATATGCTGTGGAAAGAATGTCTGAGCAACTTTTACATCAGCTTGCAACTGAACAAGTGGGTGATATTGAAGCTTACTGGGTTCTTTGGCTATTATTTCTTCCGGGTTTTTCAAATGCCAAATATCAGCGAGATCCATGTTTACTGACAAGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04150 map03460 map04150
Pfam Domains
Protein Families
Telomere_reg-2

Protein Analysis

79

Amino Acids

9.06

Weight (kDa)

4.18

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TELO2_ARM PF25320 3 - 68 2.3e-23 TELO2 ARM repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 51
AclWI GGATC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 3 cut(s) 68, 152, 195
AluBI AGCT 2 cut(s) 124, 155
AluI AGCT 2 cut(s) 124, 155
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 37
AsuC2I CCSGG 3 cut(s) 38, 39, 186
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 37
BcnI CCSGG 3 cut(s) 38, 39, 186
BfaI CTAG 1 cut(s) 11
Bme1390I CCNGG 3 cut(s) 38, 39, 186
BmeT110I CYCGRG 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 3 cut(s) 38, 39, 186
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
BpuMI CCSGG 3 cut(s) 38, 39, 186
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 38, 185
BslI CCNNNNNNNGG 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 43
BspPI GGATC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 105
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstSCI CCNGG 3 cut(s) 36, 37, 184
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 126
Cfr9I CCCGGG 1 cut(s) 37
CviAII CATG 1 cut(s) 219
CviJI RGCY 3 cut(s) 124, 155, 172
CviKI_1 RGCY 3 cut(s) 124, 155, 172
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 37
FaeI CATG 1 cut(s) 222
FaiI YATR 4 cut(s) 47, 85, 87, 220
FatI CATG 1 cut(s) 218
FauNDI CATATG 1 cut(s) 85
FspBI CTAG 1 cut(s) 11
HapII CCGG 2 cut(s) 38, 185
Hin1II CATG 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 3 cut(s) 5, 29, 80
HpaII CCGG 2 cut(s) 38, 185
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 3 cut(s) 19, 34, 106
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 4 cut(s) 11, 51, 145, 198
MaeI CTAG 1 cut(s) 11
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 173
MflI RGATCY 1 cut(s) 214
MseI TTAA 1 cut(s) 57
MspI CCGG 2 cut(s) 38, 185
MspR9I CCNGG 3 cut(s) 38, 39, 186
NciI CCSGG 3 cut(s) 38, 39, 186
NdeI CATATG 1 cut(s) 85
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 29, 80
PflMI CCANNNNNTGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 214
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 1 cut(s) 214
ScrFI CCNGG 3 cut(s) 38, 39, 186
SetI ASST 3 cut(s) 16, 126, 157
SmaI CCCGGG 1 cut(s) 39
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 3 cut(s) 36, 37, 184
TfiI GAWTC 2 cut(s) 29, 80
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 72
TspMI CCCGGG 1 cut(s) 37
Van91I CCANNNNNTGG 1 cut(s) 51
XmaI CCCGGG 1 cut(s) 37
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.