Rh3DG026700

Telomere length regulation protein TEL2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011544
Physical Location & Seq
Reverse (-)
1775302 .. 1779264
3963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG026700.1

Sequence Viewer

Length: 288 bp
ATGGACTCACTAGGTTCAGATGTTCTGGAATCAGACCCGGGTTCCATATTTTGGTTTAATCTTATTCAAGCAATCAAAGATTCATATGCTGTGGAAAGAATGTCTGAGCAACTTTTACATCAGCTTGCAACTGAACAAGTGGGTGATATTGAAGCTTACTGGGTTCTTTGGCTATTATTTCTTCCGGGTTTTTCAAATGCCAAATATCAGCGAGAGTCTGGGCTCATGGCATCAAGTTCTCGCAATGGTTTATCTTATGGTAAGCTCCCTCTTCCTGAGTCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04150 map03460 map04150
Pfam Domains
Protein Families
Telomere_reg-2

Protein Analysis

95

Amino Acids

10.66

Weight (kDa)

4.45

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TELO2_ARM PF25320 3 - 69 3.8e-23 TELO2 ARM repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 3 cut(s) 68, 152, 195
AluBI AGCT 3 cut(s) 124, 155, 265
AluI AGCT 3 cut(s) 124, 155, 265
Ama87I CYCGRG 1 cut(s) 37
AsuC2I CCSGG 3 cut(s) 38, 39, 186
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 37
BanII GRGCYC 1 cut(s) 225
BcnI CCSGG 3 cut(s) 38, 39, 186
BfaI CTAG 1 cut(s) 11
Bme1390I CCNGG 3 cut(s) 38, 39, 186
BmeT110I CYCGRG 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 3 cut(s) 38, 39, 186
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 169
BpuMI CCSGG 3 cut(s) 38, 39, 186
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 96, 267
BseNI ACTGG 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 38, 185
BslI CCNNNNNNNGG 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 97, 268
BspLI GGNNCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 105, 276
BstSCI CCNGG 3 cut(s) 36, 37, 184
Cac8I GCNNGC 1 cut(s) 126
Cfr9I CCCGGG 1 cut(s) 37
CviAII CATG 1 cut(s) 226
CviJI RGCY 5 cut(s) 124, 155, 172, 223, 265
CviKI_1 RGCY 5 cut(s) 124, 155, 172, 223, 265
DdeI CTNAG 2 cut(s) 105, 276
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 1 cut(s) 229
FaiI YATR 5 cut(s) 47, 85, 87, 227, 258
FatI CATG 1 cut(s) 225
FauNDI CATATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 225
FspBI CTAG 1 cut(s) 11
HapII CCGG 2 cut(s) 38, 185
Hin1II CATG 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 5 cut(s) 5, 29, 80, 215, 278
HpaII CCGG 2 cut(s) 38, 185
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 3 cut(s) 19, 34, 106
Hpy188III TCNNGA 2 cut(s) 26, 275
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 105, 276
Hsp92II CATG 1 cut(s) 229
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 5 cut(s) 11, 51, 145, 198, 204
LweI GCATC 1 cut(s) 239
MaeI CTAG 1 cut(s) 11
MboII GAAGA 2 cut(s) 173, 263
MhlI GDGCHC 1 cut(s) 225
MlyI GAGTC 2 cut(s) 224, 287
MnlI CCTC 1 cut(s) 279
MseI TTAA 1 cut(s) 57
MspI CCGG 2 cut(s) 38, 185
MspR9I CCNGG 3 cut(s) 38, 39, 186
NciI CCSGG 3 cut(s) 38, 39, 186
NdeI CATATG 1 cut(s) 85
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 29, 80
PflMI CCANNNNNTGG 1 cut(s) 51
PleI GAGTC 2 cut(s) 223, 286
PpsI GAGTC 2 cut(s) 223, 286
PspN4I GGNNCC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 57
SchI GAGTC 2 cut(s) 224, 287
ScrFI CCNGG 3 cut(s) 38, 39, 186
SduI GDGCHC 1 cut(s) 225
SetI ASST 4 cut(s) 16, 126, 157, 267
SfaNI GCATC 1 cut(s) 239
SmaI CCCGGG 1 cut(s) 39
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 3 cut(s) 36, 37, 184
TfiI GAWTC 2 cut(s) 29, 80
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 72
TspMI CCCGGG 1 cut(s) 37
Van91I CCANNNNNTGG 1 cut(s) 51
XmaI CCCGGG 1 cut(s) 37
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.