RLG00000034690

Telomere length regulation protein TEL2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011544
Physical Location & Seq
Reverse (-)
50933474 .. 50934209
736 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034690

Sequence Viewer

Length: 489 bp
ATGGAGGTTTTGGCAGAAGTGGTGAGCTTATGCATATATCTCAAATGTTATGCTCTCTTGTTGCGTGTAGATGTCGCTTCCAATTGGCTTGCTTGTTTCCCGTTTTCAGCACGGAAACATGTGTATGATGTTTTCTTTGTTAATGGACTTGCCACCGAGGTTGTTCAGATTTTGGTCCCTTATCTACAGCAAAGTAGAAGTGGTGACCTTGATGTCAATGCTGTTCACTCAAATACTAAAAGGGATGGATTGAGAACTGAGTTACCTGTACTTTGCTTGCTTGAAAATTATGGGGTGCTCCAGATGGCTAGAGAATTTGACGGCTCTTTCCAGTCTAAAGATTATACAAATGAAAATCTCAAGTCAACTGTATCTAGAGCGGCACAGATTATTGTTACCGTTCAGCTTCTTTCTCTAGCAGAAGAAGGGAATATGGAGATGTTTATAGATTACTCGTGTAGGATGCTTTTATGTGACGAAAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04150 map03460 map04150
Pfam Domains
Protein Families
Telomere_reg-2

Protein Analysis

163

Amino Acids

18.34

Weight (kDa)

4.76

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 380
AciI CCGC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 284
AluBI AGCT 2 cut(s) 27, 406
AluI AGCT 2 cut(s) 27, 406
Alw21I GWGCWC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 34, 215
AvaII GGWCC 1 cut(s) 175
BauI CACGAG 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 300
BccI CCATC 2 cut(s) 239, 298
BceAI ACGGC 1 cut(s) 337
BfaI CTAG 3 cut(s) 309, 375, 416
BfmI CTRYAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 250, 468
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 300
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 300
BspACI CCGC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 380
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 156
BssSI CACGAG 1 cut(s) 454
Bst2BI CACGAG 1 cut(s) 454
Bst4CI ACNGT 2 cut(s) 370, 400
BstC8I GCNNGC 2 cut(s) 90, 278
BstDEI CTNAG 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 203
BstF5I GGATG 2 cut(s) 250, 468
BstNSI RCATGY 1 cut(s) 122
BstPI GGTNACC 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 185
BtsCI GGATG 2 cut(s) 250, 468
Cac8I GCNNGC 2 cut(s) 90, 278
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 1 cut(s) 119
CviJI RGCY 5 cut(s) 27, 88, 308, 324, 406
CviKI_1 RGCY 5 cut(s) 27, 88, 308, 324, 406
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 258
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 175
Eco91I GGTNACC 1 cut(s) 203
EcoO65I GGTNACC 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 35
FaeI CATG 1 cut(s) 122
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 2 cut(s) 257, 475
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 3 cut(s) 309, 375, 416
GluI GCNGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 284
Hin1II CATG 1 cut(s) 122
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HphI GGTGA 2 cut(s) 34, 215
Hpy166II GTNNAC 2 cut(s) 226, 366
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 301, 375
Hpy8I GTNNAC 2 cut(s) 226, 366
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 2 cut(s) 370, 400
HpyCH4V TGCA 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 1 cut(s) 122
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 3 cut(s) 279, 314, 344
LweI GCATC 1 cut(s) 453
MaeI CTAG 3 cut(s) 309, 375, 416
MaeIII GTNAC 4 cut(s) 203, 261, 394, 473
MbiI CCGCTC 1 cut(s) 380
MboII GAAGA 1 cut(s) 434
MfeI CAATTG 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 3 cut(s) 82, 286, 314
MnlI CCTC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 35
MseI TTAA 2 cut(s) 141, 487
MslI CAYNNNNRTG 1 cut(s) 123
MunI CAATTG 1 cut(s) 82
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 203, 473
NsiI ATGCAT 1 cut(s) 35
NspI RCATGY 1 cut(s) 122
PciI ACATGT 1 cut(s) 118
PkrI GCNGC 1 cut(s) 382
PscI ACATGT 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 175
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 2 cut(s) 141, 487
SatI GCNGC 1 cut(s) 381
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 300
SetI ASST 6 cut(s) 9, 29, 162, 210, 268, 408
SfaNI GCATC 1 cut(s) 453
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 3 cut(s) 82, 286, 314
SsiI CCGC 1 cut(s) 380
SspMI CTAG 3 cut(s) 309, 375, 416
TaaI ACNGT 2 cut(s) 370, 400
TasI AATT 3 cut(s) 82, 286, 314
TatI WGTACW 1 cut(s) 268
TauI GCSGC 1 cut(s) 383
Tru1I TTAA 2 cut(s) 141, 487
Tru9I TTAA 2 cut(s) 141, 487
TseFI GTSAC 2 cut(s) 203, 473
Tsp45I GTSAC 2 cut(s) 203, 473
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 314
XbaI TCTAGA 1 cut(s) 374
XceI RCATGY 1 cut(s) 122
XspI CTAG 3 cut(s) 309, 375, 416
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.