Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011544

Physical Location & Seq

Genomic Coordinates Reverse (-)

51277625 .. 51279727

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATAGCATACTTAAATGTTCTCGAAATCGACTTCAAAAATGGAGGTAGAAATGTCATATACCTACTTAATTCAGATCAAACATTTTTATTACTATCTTCATATTGTTTATTATTGACAAAGTACTATAGTTTGATTTTCAAGCAAGTTACCATTCAGCTTCTTTCTCTAGCGAAAGAAGGGAATATGGAGATGTTAGATGAAGGAGCCTTCGGTAAAAGTGACATGCGGGGGACCTTCTTGTTTGTTGGGGAAACATTTTCTAGTATATCTCGACTTGGATCTGTAGATGTGCTTTTAAGTGAAATAATCCCAAGGATTCTTAGACATGTCTGGTGTTTGTCATCGCCAACTATGGACTCACTAGGTTCGGATGTTCGGAATCGGACCCGGGTTCCATATTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

136

Amino Acids

15.39

Weight (kDa)

6.56

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25520
rosa_chinensis	RchiOBHm_Chr0c39g0503251 RchiOBHm_Chr1g0339741 RchiOBHm_Chr1g0353191 RchiOBHm_Chr4g0412201 RchiOBHm_Chr6g0278011
rosa_laevigata	RLG00000004560 RLG00000016958 RLG00000034690
rosa_roxburghii	Rroxscaffold_3G00256810
rosa_samantha	Rh3AG026100 Rh3DG026700 Rh4AG172000 Rh6DG221200 Rh6DG221300 Rh7CG161700 Rh7DG322000 Rh7DG322100
rosa_wichuraiana	Rw5G032770 Rw7G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	404
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	289
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	37, 142
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
AlwI	GGATC	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	234, 387
AsuC2I	CCSGG	2 cut(s)	391, 392
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	2 cut(s)	234, 387
BcnI	CCSGG	2 cut(s)	391, 392
BfaI	CTAG	3 cut(s)	170, 264, 365
BfmI	CTRYAG	2 cut(s)	127, 285
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	391, 392
Bme18I	GGWCC	2 cut(s)	234, 387
BmeT110I	CYCGRG	1 cut(s)	390
BmgT120I	GGNCC	2 cut(s)	234, 387
BmiI	GGNNCC	4 cut(s)	208, 235, 389, 396
BmrFI	CCNGG	2 cut(s)	391, 392
BpuMI	CCSGG	2 cut(s)	391, 392
BsaJI	CCNNGG	2 cut(s)	314, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	314, 390
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	76, 281
BspACI	CCGC	1 cut(s)	229
BspLI	GGNNCC	4 cut(s)	208, 235, 389, 396
BspPI	GGATC	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	314, 390
BssMI	GATC	2 cut(s)	76, 281
BssT1I	CCWWGG	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	2 cut(s)	79, 284
BstMBI	GATC	2 cut(s)	76, 281
BstNSI	RCATGY	2 cut(s)	229, 332
BstSCI	CCNGG	2 cut(s)	389, 390
BstSFI	CTRYAG	2 cut(s)	127, 285
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	234, 387
Cfr9I	CCCGGG	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	226, 329
CviJI	RGCY	2 cut(s)	160, 209
CviKI_1	RGCY	2 cut(s)	160, 209
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	2 cut(s)	78, 283
DpnII	GATC	2 cut(s)	76, 281
Eco130I	CCWWGG	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	234, 387
Eco88I	CYCGRG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	2 cut(s)	229, 332
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	225, 328
FauI	CCCGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	386
FspBI	CTAG	3 cut(s)	170, 264, 365
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	2 cut(s)	229, 332
HinfI	GANTC	3 cut(s)	319, 359, 382
HpaII	CCGG	1 cut(s)	391
Hpy188I	TCNGA	4 cut(s)	76, 373, 381, 387
Hpy188III	TCNNGA	2 cut(s)	23, 273
HpyAV	CCTTC	4 cut(s)	173, 197, 220, 247
HpyF3I	CTNAG	1 cut(s)	323
Hsp92II	CATG	2 cut(s)	229, 332
Kzo9I	GATC	2 cut(s)	76, 281
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	2 cut(s)	319, 404
MaeI	CTAG	3 cut(s)	170, 264, 365
MaeIII	GTNAC	2 cut(s)	148, 221
MalI	GATC	2 cut(s)	78, 283
MboI	GATC	2 cut(s)	76, 281
MboII	GAAGA	1 cut(s)	90
MflI	RGATCY	1 cut(s)	281
MluCI	AATT	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	1 cut(s)	38
MseI	TTAA	3 cut(s)	14, 69, 299
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	2 cut(s)	391, 392
NciI	CCSGG	2 cut(s)	391, 392
NdeII	GATC	2 cut(s)	76, 281
NlaIII	CATG	2 cut(s)	229, 332
NlaIV	GGNNCC	4 cut(s)	208, 235, 389, 396
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	229, 332
PciI	ACATGT	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	319, 382
PflMI	CCANNNNNTGG	1 cut(s)	404
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PpuMI	RGGWCCY	1 cut(s)	234
PscI	ACATGT	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	208, 235, 389, 396
PspPI	GGNCC	2 cut(s)	234, 387
PspPPI	RGGWCCY	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	281
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	3 cut(s)	14, 69, 299
Sau3AI	GATC	2 cut(s)	76, 281
Sau96I	GGNCC	2 cut(s)	234, 387
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	391, 392
SetI	ASST	5 cut(s)	49, 66, 162, 239, 370
SfcI	CTRYAG	2 cut(s)	127, 285
SinI	GGWCC	2 cut(s)	234, 387
SmaI	CCCGGG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	3 cut(s)	170, 264, 365
StyD4I	CCNGG	2 cut(s)	389, 390
StyI	CCWWGG	1 cut(s)	314
TaqI	TCGA	3 cut(s)	24, 30, 274
TasI	AATT	1 cut(s)	70
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	319, 382
Tru1I	TTAA	3 cut(s)	14, 69, 299
Tru9I	TTAA	3 cut(s)	14, 69, 299
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	90, 216
TspMI	CCCGGG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	404
VpaK11BI	GGWCC	2 cut(s)	234, 387
XceI	RCATGY	2 cut(s)	229, 332
XmaI	CCCGGG	1 cut(s)	390
XspI	CTAG	3 cut(s)	170, 264, 365
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.