Rw5G032770

Telomere length regulation protein TEL2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011544
Physical Location & Seq
Forward (+)
55533796 .. 55536728
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032770.1

Sequence Viewer

Length: 816 bp
ATGCTTTTGCGATTTTTGTGGTGTGTAGATGTCGCTTCCAATTGGCTTGCTTGTTTCCCGTTTTCAGCACGAAAACATGTGTATGATGTTTTCTTTGTTAATGGACTTGCCACCGAGGTTGTTCAGATTTTGGTCCCTTATCTACATCAAAGTAGAAGTGGTGACCTTGATGTCAATAGAATTGGCGGCTCTTTCCAGTTTGAAGATTATACAAATGAAAATCTCAAGTCAACTGTATCTAGAGTGGCACAGATTGTTGCATCTATACCTTACAAAGCACAATTGAGAGCCCAACTTCACTTACATCAAACATTTTTATTACTATCTTCATATTATTTATTATTGACAAAGTACTATAGTTTGATTTTCAAGCAAGTTACCGTTCAGCTTCTTTCTCTAGCAGAAGAAGGGAATATGGAGATGTTAGATGAAGGAGCCTTCCATAAAAGTGACATGCAGGGGACCTTACTATTTGTTGGGGAAACATTTTCTCGTATATCTCGACTTGGATCTGTAGATGTGCTTTTAAGTGAAATAATGCCAAGGATTCTTAGACATGTCTGGTGTTTGTCATCCCCAACTATGGACTCACTAGGTTCAGTTGTTCTGGAATCAGACCCGGGTTCCATATTTTGGTTTAATCTTATTCAAGCAATCAAAGATTCATATGATGTGGAAAGAATGTCTGAGCAACTTTTACATCAGCTTGCAACTGAACAAGTGGGTGATATTGAAGCTTACTGGGTTCTTTGGCTATTATTTCTTCCGGGTGTTAAGAAATGCAATTGCACAAAGTCTAATGAATGCATCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04150 map03460 map04150
Pfam Domains
Protein Families
Telomere_reg-2

Protein Analysis

271

Amino Acids

30.99

Weight (kDa)

5.49

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TELO2_ARM PF25320 173 - 262 4.2e-27 TELO2 ARM repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 633
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 517
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 583, 633
AflIII ACRYGT 2 cut(s) 76, 556
AgsI TTSAA 4 cut(s) 203, 370, 650, 734
AluBI AGCT 3 cut(s) 388, 706, 737
AluI AGCT 3 cut(s) 388, 706, 737
AlwI GGATC 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 619
AspS9I GGNCC 2 cut(s) 133, 462
AsuC2I CCSGG 3 cut(s) 620, 621, 768
AsuHPI GGTGA 2 cut(s) 173, 737
AvaI CYCGRG 1 cut(s) 619
AvaII GGWCC 2 cut(s) 133, 462
BanII GRGCYC 1 cut(s) 292
BcnI CCSGG 3 cut(s) 620, 621, 768
BfaI CTAG 4 cut(s) 240, 398, 593, 814
BfmI CTRYAG 2 cut(s) 355, 513
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 3 cut(s) 620, 621, 768
Bme18I GGWCC 2 cut(s) 133, 462
BmeT110I CYCGRG 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 133, 462
BmiI GGNNCC 4 cut(s) 135, 436, 463, 625
BmrFI CCNGG 3 cut(s) 620, 621, 768
BmrI ACTGGG 1 cut(s) 751
BmsI GCATC 1 cut(s) 269
BmuI ACTGGG 1 cut(s) 751
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 3 cut(s) 620, 621, 768
BsaJI CCNNGG 3 cut(s) 114, 542, 619
Bsc4I CCNNNNNNNGG 2 cut(s) 583, 633
Bse1I ACTGG 2 cut(s) 196, 746
BseDI CCNNGG 3 cut(s) 114, 542, 619
BseGI GGATG 1 cut(s) 572
BseLI CCNNNNNNNGG 2 cut(s) 583, 633
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 2 cut(s) 196, 746
BsiHKCI CYCGRG 1 cut(s) 619
BsiSI CCGG 2 cut(s) 620, 767
BslFI GGGAC 2 cut(s) 119, 475
BslI CCNNNNNNNGG 2 cut(s) 583, 633
BsmFI GGGAC 2 cut(s) 119, 475
BsmI GAATGC 1 cut(s) 809
BsoBI CYCGRG 1 cut(s) 619
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 509
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 679
BspLI GGNNCC 4 cut(s) 135, 436, 463, 625
BspPI GGATC 1 cut(s) 517
BsrI ACTGG 2 cut(s) 196, 746
BssECI CCNNGG 3 cut(s) 114, 542, 619
BssMI GATC 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 542
Bst4CI ACNGT 2 cut(s) 235, 382
BstC8I GCNNGC 2 cut(s) 48, 708
BstDEI CTNAG 2 cut(s) 551, 687
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 572
BstKTI GATC 1 cut(s) 512
BstMBI GATC 1 cut(s) 509
BstNSI RCATGY 3 cut(s) 80, 457, 560
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 3 cut(s) 618, 619, 766
BstSFI CTRYAG 2 cut(s) 355, 513
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BtsCI GGATG 1 cut(s) 572
Cac8I GCNNGC 2 cut(s) 48, 708
Cfr13I GGNCC 2 cut(s) 133, 462
Cfr9I CCCGGG 1 cut(s) 619
Csp6I GTAC 1 cut(s) 352
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 3 cut(s) 77, 454, 557
CviJI RGCY 8 cut(s) 46, 189, 290, 388, 437, 706, 737, 754
CviKI_1 RGCY 8 cut(s) 46, 189, 290, 388, 437, 706, 737, 754
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 2 cut(s) 551, 687
DpnI GATC 1 cut(s) 511
DpnII GATC 1 cut(s) 509
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 292
Eco47I GGWCC 2 cut(s) 133, 462
Eco88I CYCGRG 1 cut(s) 619
Eco91I GGTNACC 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 462
EcoO65I GGTNACC 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 542
EcoT22I ATGCAT 1 cut(s) 809
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 3 cut(s) 80, 457, 560
FaqI GGGAC 2 cut(s) 119, 475
FatI CATG 3 cut(s) 76, 453, 556
FauNDI CATATG 1 cut(s) 667
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 1 cut(s) 559
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 4 cut(s) 240, 398, 593, 814
GluI GCNGC 1 cut(s) 187
HapII CCGG 2 cut(s) 620, 767
Hin1II CATG 3 cut(s) 80, 457, 560
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 4 cut(s) 547, 587, 611, 662
HpaII CCGG 2 cut(s) 620, 767
HphI GGTGA 2 cut(s) 173, 737
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 3 cut(s) 126, 616, 688
Hpy188III TCNNGA 3 cut(s) 240, 501, 608
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 3 cut(s) 401, 425, 448
HpyCH4III ACNGT 2 cut(s) 235, 382
HpyCH4V TGCA 6 cut(s) 260, 457, 710, 783, 789, 807
HpyF3I CTNAG 2 cut(s) 551, 687
Hsp92II CATG 3 cut(s) 80, 457, 560
Kzo9I GATC 1 cut(s) 509
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 7 cut(s) 209, 443, 547, 593, 633, 727, 780
LweI GCATC 1 cut(s) 269
MaeI CTAG 4 cut(s) 240, 398, 593, 814
MaeIII GTNAC 3 cut(s) 161, 376, 449
MalI GATC 1 cut(s) 511
MboI GATC 1 cut(s) 509
MboII GAAGA 4 cut(s) 215, 318, 416, 755
MfeI CAATTG 3 cut(s) 40, 281, 784
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 4 cut(s) 40, 180, 281, 784
MlyI GAGTC 1 cut(s) 581
MnlI CCTC 1 cut(s) 109
Mph1103I ATGCAT 1 cut(s) 809
MseI TTAA 4 cut(s) 99, 527, 639, 774
MslI CAYNNNNRTG 2 cut(s) 81, 447
MspI CCGG 2 cut(s) 620, 767
MspR9I CCNGG 3 cut(s) 620, 621, 768
MunI CAATTG 3 cut(s) 40, 281, 784
Mva1269I GAATGC 1 cut(s) 809
NciI CCSGG 3 cut(s) 620, 621, 768
NdeI CATATG 1 cut(s) 667
NdeII GATC 1 cut(s) 509
NlaIII CATG 3 cut(s) 80, 457, 560
NlaIV GGNNCC 4 cut(s) 135, 436, 463, 625
NmuCI GTSAC 2 cut(s) 161, 449
NsiI ATGCAT 1 cut(s) 809
NspI RCATGY 3 cut(s) 80, 457, 560
PciI ACATGT 2 cut(s) 76, 556
PcsI WCGNNNNNNNCGW 1 cut(s) 499
PctI GAATGC 1 cut(s) 809
PfeI GAWTC 3 cut(s) 547, 611, 662
PflMI CCANNNNNTGG 1 cut(s) 633
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 462
PscI ACATGT 2 cut(s) 76, 556
Psp5II RGGWCCY 1 cut(s) 462
PspEI GGTNACC 1 cut(s) 161
PspN4I GGNNCC 4 cut(s) 135, 436, 463, 625
PspPI GGNCC 2 cut(s) 133, 462
PspPPI RGGWCCY 1 cut(s) 462
PsuI RGATCY 1 cut(s) 509
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 81, 447
SaqAI TTAA 4 cut(s) 99, 527, 639, 774
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 509
Sau96I GGNCC 2 cut(s) 133, 462
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 3 cut(s) 620, 621, 768
SduI GDGCHC 1 cut(s) 292
SetI ASST 8 cut(s) 120, 168, 271, 390, 467, 598, 708, 739
SfaNI GCATC 1 cut(s) 269
SfcI CTRYAG 2 cut(s) 355, 513
SinI GGWCC 2 cut(s) 133, 462
SmaI CCCGGG 1 cut(s) 621
SmiMI CAYNNNNRTG 2 cut(s) 81, 447
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 40, 180, 281, 784
SsiI CCGC 1 cut(s) 186
SspMI CTAG 4 cut(s) 240, 398, 593, 814
StyD4I CCNGG 3 cut(s) 618, 619, 766
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 2 cut(s) 235, 382
TaqI TCGA 1 cut(s) 502
TasI AATT 4 cut(s) 40, 180, 281, 784
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 3 cut(s) 547, 611, 662
Tru1I TTAA 4 cut(s) 99, 527, 639, 774
Tru9I TTAA 4 cut(s) 99, 527, 639, 774
TseFI GTSAC 2 cut(s) 161, 449
Tsp45I GTSAC 2 cut(s) 161, 449
TspDTI ATGAA 5 cut(s) 231, 318, 444, 654, 816
TspMI CCCGGG 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 633
VpaK11BI GGWCC 2 cut(s) 133, 462
XbaI TCTAGA 1 cut(s) 239
XceI RCATGY 3 cut(s) 80, 457, 560
XmaI CCCGGG 1 cut(s) 619
XspI CTAG 4 cut(s) 240, 398, 593, 814
ZrmI AGTACT 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.