Rh6DG221300

Telomere length regulation protein TEL2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011544
Physical Location & Seq
Forward (+)
39437450 .. 39438714
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG221300.1

Sequence Viewer

Length: 480 bp
ATGGGGTGCTCCAGATGGCTAGAGAATTTGGCGGCTCTTTCCAGTCTGAAGATTATACAAATGAAAATCTCAAAAGAAGGGAATATGGAGTTGTTAGATGAAGGAGCCTTCCGTAAAAGTGACATGCAGGGGACCTTACTGTTTGTTGGGGAAACATTTTCTCGTATATCTCGACTTGGATCTGTAGATGTGCTTTTAAGTGAAATAATCCCAAGGATTCTTAGACATATCTGGTGTTTGTCATCGCCAACTATGGACTCACTAGGTTTAGATGTTCTGGAATCAGACCCGGGTTCTATATTTTGGTTGAATCTTATTCAAGCAATCAAAGATTCATATGCTGTGGAAAGAATGTCTGAGAAACTTTTACATCAGCTTGCAACTGAACAAGTGGGTGATATTGAAGCTTACTGGGTTCTTTGGCTATTATTTCTTCGGGTTTTTCAAATGCCAAATATCAGCGAGGTCCATGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04150 map03460 map04150
Pfam Domains
Protein Families
Telomere_reg-2

Protein Analysis

159

Amino Acids

18.15

Weight (kDa)

5.03

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TELO2_ARM PF25320 63 - 150 4.8e-30 TELO2 ARM repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 68
AgsI TTSAA 4 cut(s) 310, 320, 404, 446
AluBI AGCT 2 cut(s) 376, 407
AluI AGCT 2 cut(s) 376, 407
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 289
ApoI RAATTY 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 132, 466
AsuC2I CCSGG 2 cut(s) 290, 291
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 2 cut(s) 132, 466
Bbv12I GWGCWC 1 cut(s) 11
BccI CCATC 1 cut(s) 9
BcnI CCSGG 2 cut(s) 290, 291
BfaI CTAG 2 cut(s) 20, 263
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 290, 291
Bme18I GGWCC 2 cut(s) 132, 466
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 132, 466
BmiI GGNNCC 2 cut(s) 106, 133
BmrFI CCNGG 2 cut(s) 290, 291
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BpuMI CCSGG 2 cut(s) 290, 291
BsaJI CCNNGG 2 cut(s) 212, 289
Bse1I ACTGG 2 cut(s) 42, 416
BseDI CCNNGG 2 cut(s) 212, 289
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 42, 416
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 179
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 106, 133
BspPI GGATC 1 cut(s) 187
BsrI ACTGG 2 cut(s) 42, 416
BssECI CCNNGG 2 cut(s) 212, 289
BssMI GATC 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 221, 357
BstKTI GATC 1 cut(s) 182
BstMBI GATC 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 288, 289
BstSFI CTRYAG 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 132, 466
Cfr9I CCCGGG 1 cut(s) 289
CviAII CATG 2 cut(s) 124, 470
CviJI RGCY 6 cut(s) 19, 35, 107, 376, 407, 424
CviKI_1 RGCY 6 cut(s) 19, 35, 107, 376, 407, 424
DdeI CTNAG 2 cut(s) 221, 357
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 132, 466
Eco57I CTGAAG 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 2 cut(s) 127, 473
FaqI GGGAC 1 cut(s) 145
FatI CATG 2 cut(s) 123, 469
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 20, 263
GluI GCNGC 1 cut(s) 33
HapII CCGG 1 cut(s) 290
Hin1II CATG 2 cut(s) 127, 473
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 5 cut(s) 217, 257, 281, 310, 332
HpaII CCGG 1 cut(s) 290
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 48, 286, 358
Hpy188III TCNNGA 3 cut(s) 12, 171, 278
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 3 cut(s) 71, 95, 118
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 127, 380
HpyF3I CTNAG 2 cut(s) 221, 357
Hsp92II CATG 2 cut(s) 127, 473
Kzo9I GATC 1 cut(s) 179
LmnI GCTCC 2 cut(s) 14, 104
LpnPI CCDG 7 cut(s) 25, 55, 113, 217, 263, 303, 397
MaeI CTAG 2 cut(s) 20, 263
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MboII GAAGA 2 cut(s) 61, 425
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 1 cut(s) 25
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 1 cut(s) 457
MseI TTAA 1 cut(s) 197
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 290, 291
NciI CCSGG 2 cut(s) 290, 291
NdeI CATATG 1 cut(s) 337
NdeII GATC 1 cut(s) 179
NlaIII CATG 2 cut(s) 127, 473
NlaIV GGNNCC 2 cut(s) 106, 133
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PfeI GAWTC 4 cut(s) 217, 281, 310, 332
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 106, 133
PspPI GGNCC 2 cut(s) 132, 466
PspPPI RGGWCCY 1 cut(s) 132
PsuI RGATCY 1 cut(s) 179
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 179
Sau96I GGNCC 2 cut(s) 132, 466
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 290, 291
SduI GDGCHC 1 cut(s) 11
SetI ASST 5 cut(s) 137, 268, 378, 409, 468
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 2 cut(s) 132, 466
SmaI CCCGGG 1 cut(s) 291
Sse9I AATT 1 cut(s) 25
SsiI CCGC 1 cut(s) 32
SspMI CTAG 2 cut(s) 20, 263
StyD4I CCNGG 2 cut(s) 288, 289
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 25
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 4 cut(s) 217, 281, 310, 332
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 77, 114, 324
TspGWI ACGGA 1 cut(s) 101
TspMI CCCGGG 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 132, 466
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 127
XmaI CCCGGG 1 cut(s) 289
XspI CTAG 2 cut(s) 20, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.