FvH4_3g26780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017632
Physical Location & Seq
Reverse (-)
19936384 .. 19937565
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26780.t1

Sequence Viewer

Length: 315 bp
ATGATGAACCTGCTCATCTTGGCCGTCTACAAGGTCCCTCGGGGGCTGTGCAGGAAGGCCTGGGCCATGACCAAGACCAAGAGCAACAAGCAGAGCTGCAAAAAGGGCAGCCTGCTACCCAGGCCCACGGGGCTCGGCAACGGCGACTTGAGGAAGACGGTGAGTGGCGGCGAAGATGATGACTTGATGATGAAGAAGAACAAGGAAGACGACGCGGAATCGGAGGATGCCGCCTTCGAGAAGGAGATGTGGGACCGTTTTTACGGGGCCGGTTTTTGGAGGAGCTCAACGTCTGCGTCTACCAAAGAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.64

Weight (kDa)

9.14

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g26780
malus_domestica MD03G1160300.v1.1 MD15G1108700.v1.1
prunus_persica Prupe.6G148600_v2.0.a1
pyrus_communis pycom03g11280 pycom08g10970 pycom15g09930
rosa_chinensis RchiOBHm_Chr5g0049201
rosa_rugosa Rorug05G0245700
rosa_samantha Rh5BG334000 Rh5DG346100
rosa_wichuraiana Rw5G030560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccI GTMKAC 2 cut(s) 27, 299
AccII CGCG 1 cut(s) 215
AciI CCGC 3 cut(s) 168, 215, 231
AcoI YGGCCR 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 276
AjnI CCWGG 2 cut(s) 59, 119
AluBI AGCT 2 cut(s) 96, 285
AluI AGCT 2 cut(s) 96, 285
Alw21I GWGCWC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 5 cut(s) 21, 57, 63, 122, 267
ApeKI GCWGC 2 cut(s) 96, 108
AspS9I GGNCC 5 cut(s) 34, 63, 123, 253, 267
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 2 cut(s) 34, 253
BanII GRGCYC 2 cut(s) 135, 287
BbsI GAAGAC 2 cut(s) 161, 213
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 83, 120
BceAI ACGGC 2 cut(s) 8, 157
BciT130I CCWGG 2 cut(s) 61, 121
BfuAI ACCTGC 1 cut(s) 18
BglI GCCNNNNNGGC 1 cut(s) 130
BisI GCNGC 4 cut(s) 97, 109, 169, 231
BlsI GCNGC 4 cut(s) 98, 110, 170, 232
Bme1390I CCNGG 2 cut(s) 61, 121
Bme18I GGWCC 2 cut(s) 34, 253
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 5 cut(s) 34, 63, 123, 253, 267
BmiI GGNNCC 3 cut(s) 36, 254, 268
BmrFI CCNGG 2 cut(s) 61, 121
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 2 cut(s) 161, 213
BpuEI CTTGAG 1 cut(s) 169
BsaJI CCNNGG 4 cut(s) 38, 60, 119, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 269
BseBI CCWGG 2 cut(s) 61, 121
BseDI CCNNGG 4 cut(s) 38, 60, 119, 126
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 295
BseXI GCAGC 2 cut(s) 83, 120
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 5 cut(s) 23, 59, 65, 124, 269
BsiHKAI GWGCWC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 2 cut(s) 20, 266
BslI CCNNNNNNNGG 1 cut(s) 276
BsmFI GGGAC 2 cut(s) 20, 266
BsnI GGCC 5 cut(s) 23, 59, 65, 124, 269
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 135, 287
BspACI CCGC 3 cut(s) 168, 215, 231
BspANI GGCC 5 cut(s) 23, 59, 65, 124, 269
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 3 cut(s) 36, 254, 268
BspMI ACCTGC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 4 cut(s) 38, 60, 119, 126
Bst2UI CCWGG 2 cut(s) 61, 121
Bst4CI ACNGT 2 cut(s) 160, 257
BstC8I GCNNGC 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 215
BstMWI GCNNNNNNNGC 3 cut(s) 105, 121, 130
BstNI CCWGG 2 cut(s) 61, 121
BstSCI CCNGG 2 cut(s) 59, 119
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 2 cut(s) 83, 120
BstV2I GAAGAC 2 cut(s) 161, 213
BsuRI GGCC 5 cut(s) 23, 59, 65, 124, 269
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 5 cut(s) 34, 63, 123, 253, 267
CseI GACGC 2 cut(s) 221, 285
CviAII CATG 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 2 cut(s) 135, 287
Eco47I GGWCC 2 cut(s) 34, 253
Eco53kI GAGCTC 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 59, 119
EcoT38I GRGCYC 2 cut(s) 135, 287
FaeI CATG 1 cut(s) 70
FaiI YATR 1 cut(s) 68
FaqI GGGAC 2 cut(s) 20, 266
FatI CATG 1 cut(s) 66
FblI GTMKAC 2 cut(s) 27, 299
Fnu4HI GCNGC 4 cut(s) 97, 109, 169, 231
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 2 cut(s) 135, 287
Fsp4HI GCNGC 4 cut(s) 97, 109, 169, 231
GluI GCNGC 4 cut(s) 97, 109, 169, 231
HaeIII GGCC 5 cut(s) 23, 59, 65, 124, 269
HapII CCGG 1 cut(s) 270
HgaI GACGC 2 cut(s) 221, 285
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 28, 300
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 2 cut(s) 28, 300
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 49, 235, 244
HpyCH4III ACNGT 2 cut(s) 160, 257
HpyCH4IV ACGT 2 cut(s) 290, 311
HpyCH4V TGCA 2 cut(s) 51, 99
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 121, 130
HpySE526I ACGT 2 cut(s) 290, 311
Hsp92II CATG 1 cut(s) 70
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 8 cut(s) 23, 37, 46, 73, 106, 125, 133, 283
Lsp1109I GCAGC 2 cut(s) 83, 120
LweI GCATC 1 cut(s) 217
MaeII ACGT 2 cut(s) 290, 311
MboII GAAGA 5 cut(s) 166, 185, 205, 208, 218
MhlI GDGCHC 2 cut(s) 135, 287
MnlI CCTC 4 cut(s) 48, 144, 217, 273
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 61, 121
MvaI CCWGG 2 cut(s) 61, 121
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 3 cut(s) 105, 121, 130
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 3 cut(s) 36, 254, 268
NmeAIII GCCGAG 1 cut(s) 114
PceI AGGCCT 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 98, 110, 170, 232
PpuMI RGGWCCY 1 cut(s) 34
Psp124BI GAGCTC 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 59, 119
PspGI CCWGG 2 cut(s) 59, 119
PspN4I GGNNCC 3 cut(s) 36, 254, 268
PspPI GGNCC 5 cut(s) 34, 63, 123, 253, 267
PspPPI RGGWCCY 1 cut(s) 34
SacI GAGCTC 1 cut(s) 287
SatI GCNGC 4 cut(s) 97, 109, 169, 231
Sau96I GGNCC 5 cut(s) 34, 63, 123, 253, 267
ScrFI CCNGG 2 cut(s) 61, 121
SduI GDGCHC 2 cut(s) 135, 287
SetI ASST 6 cut(s) 12, 36, 98, 287, 293, 314
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 2 cut(s) 34, 253
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 3 cut(s) 168, 215, 231
SstI GAGCTC 1 cut(s) 287
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 59, 119
TaaI ACNGT 2 cut(s) 160, 257
TaiI ACGT 2 cut(s) 293, 314
TaqI TCGA 1 cut(s) 237
TauI GCSGC 2 cut(s) 171, 233
TfiI GAWTC 1 cut(s) 218
TseI GCWGC 2 cut(s) 96, 108
TspDTI ATGAA 2 cut(s) 20, 206
VpaK11BI GGWCC 2 cut(s) 34, 253
XmiI GTMKAC 2 cut(s) 27, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.